genome.fa.s15.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  137  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44446717--44446788	7	10.4	7	76	8	58	34	43	0	22	1.54
44446935--44446967	14	2.3	15	94	5	59	36	33	0	30	1.58
44447371--44447645	41	6.7	41	85	0	363	26	23	23	26	2.00
44447683--44447817	39	3.4	39	80	5	119	22	20	19	37	1.95
44482224--44482264	21	2.0	21	90	0	64	19	29	21	29	1.98
44488877--44488915	21	1.9	20	84	5	51	61	5	17	15	1.51
44489546--44489586	21	2.0	21	85	9	57	31	26	2	39	1.70
44491213--44491256	18	2.4	18	80	0	52	20	22	9	47	1.78
44492638--44493074	223	2.0	223	87	1	644	27	17	16	38	1.91
44492844--44493286	124	3.5	124	86	4	568	29	16	14	38	1.89
44493373--44493441	31	2.2	32	84	7	88	37	11	0	50	1.39
44493393--44493457	31	2.2	30	83	5	78	38	20	0	41	1.52
44497458--44497620	54	3.0	54	83	1	202	31	17	16	33	1.93
44498468--44498517	21	2.4	20	74	9	55	76	0	18	6	0.99
44498468--44498516	16	3.1	16	75	18	50	75	0	18	6	1.00
44498724--44498797	33	2.3	33	88	2	105	62	4	28	5	1.36
44504209--44504324	46	2.6	46	90	4	184	32	14	24	28	1.94
44507471--44507583	37	3.1	37	78	13	117	39	2	2	54	1.28
44507614--44507645	12	2.6	13	85	14	50	50	0	0	50	1.00
44515449--44515507	11	5.2	11	75	18	50	62	3	0	33	1.12
44517145--44517189	10	4.7	10	74	20	51	51	0	0	48	1.00
44517142--44517279	17	8.2	17	66	22	85	44	5	2	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44517173--44517321	34	4.4	32	67	23	92	44	5	4	46	1.45
44517246--44517290	10	4.7	10	74	20	51	51	0	0	48	1.00
44517127--44517328	101	2.0	101	100	0	404	42	6	3	46	1.49
44527368--44527406	19	2.1	19	85	9	53	38	2	10	48	1.51
44528178--44528206	14	2.1	14	100	0	58	65	6	6	20	1.40
44529977--44530083	54	2.0	54	88	0	160	32	18	24	24	1.97
44533237--44533263	3	9.0	3	100	0	54	33	33	0	33	1.58
44537005--44537094	31	2.9	30	88	4	135	23	33	0	43	1.54
44539599--44539648	14	3.2	15	83	13	57	46	4	0	50	1.20
44550401--44550470	29	2.4	29	90	4	106	42	7	37	12	1.71
44551925--44551966	21	2.0	21	85	0	57	33	0	23	42	1.55
44552325--44552447	25	5.0	25	75	11	94	19	26	19	34	1.96
44552351--44552469	49	2.4	49	78	9	116	21	28	17	32	1.96
44552428--44552497	25	2.8	25	88	0	104	30	30	10	30	1.90
44554019--44554684	332	2.0	332	97	0	1251	38	16	16	28	1.90
44566165--44566224	27	2.4	23	75	17	57	0	26	6	66	1.16
44566177--44566233	24	2.2	27	84	9	75	0	24	5	70	1.08
44569899--44569955	21	2.7	20	71	10	51	33	10	8	47	1.69
44577375--44577426	24	2.2	24	82	0	59	23	28	5	42	1.77
44597412--44597441	12	2.5	12	94	0	51	23	40	30	6	1.80
44600282--44600330	16	3.1	16	87	0	71	59	14	10	16	1.61
44600346--44600632	78	3.7	77	86	6	355	45	13	11	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44604589--44604621	15	2.1	16	88	5	50	60	0	33	6	1.21
44608433--44608460	6	4.7	6	100	0	56	14	0	0	85	0.59
44629186--44629221	11	3.3	11	96	0	63	66	0	5	27	1.13
44630821--44630899	40	2.0	40	94	0	140	37	5	15	41	1.69
44640732--44640761	6	5.0	6	100	0	60	83	0	0	16	0.65
44643294--44643328	15	2.3	15	100	0	70	40	25	5	28	1.78
44650928--44651101	87	2.0	87	95	0	312	29	20	21	28	1.98
44653453--44653565	57	2.0	57	82	0	136	39	14	15	30	1.87
44654018--44654870	305	2.8	304	87	4	1216	48	16	14	21	1.81
44656346--44656542	30	6.6	30	84	0	250	38	16	12	32	1.86
44656346--44656542	60	3.3	60	90	0	313	38	16	12	32	1.86
44657675--44657737	15	4.2	15	77	0	72	49	6	0	44	1.28
44661893--44662101	41	5.1	41	82	2	258	35	17	28	18	1.94
44662021--44662084	20	3.2	20	68	12	58	35	17	32	14	1.89
44680596--44680639	21	2.1	21	100	0	88	38	15	9	36	1.80
44683330--44683381	24	2.3	22	78	15	61	5	21	0	73	1.04
44683678--44683702	13	1.9	13	100	0	50	28	32	0	40	1.57
44683948--44684018	10	7.7	9	76	16	56	39	0	1	59	1.06
44683945--44684045	28	3.6	28	78	7	98	40	0	0	57	1.12
44683997--44684035	20	1.9	21	89	5	62	41	0	0	58	0.98
44684043--44684540	245	2.0	245	98	0	971	34	11	17	36	1.85
44684412--44684584	90	1.9	88	82	4	213	35	9	18	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44685858--44685901	23	1.9	23	81	9	54	25	4	9	61	1.45
44692419--44692478	27	2.1	28	87	12	86	35	20	16	28	1.94
44692647--44692786	40	3.7	36	75	13	104	25	19	21	33	1.97
44692767--44692928	69	2.4	68	81	1	189	22	22	22	32	1.98
44698248--44698426	85	2.1	85	96	0	331	37	8	26	26	1.86
44700566--44701207	47	13.6	47	92	3	1022	33	8	28	29	1.87
44706385--44706677	50	5.8	50	87	2	419	21	30	21	26	1.98
44706772--44706801	13	2.3	13	94	0	51	50	13	3	33	1.58
44708787--44708830	22	1.9	24	86	9	65	59	11	6	22	1.55
44714792--44714855	29	2.2	28	80	2	74	46	12	6	34	1.67
44720836--44721041	29	7.1	29	81	4	191	28	11	21	39	1.87
44720830--44721041	87	2.4	87	79	3	230	29	11	21	38	1.88
44720881--44721074	58	3.4	57	79	1	190	29	11	21	38	1.88
44728746--44728948	93	2.2	94	84	1	273	32	13	13	40	1.83
44728834--44729262	218	2.0	218	96	0	795	32	15	13	38	1.86
44728981--44729164	95	1.9	95	87	0	269	33	15	12	38	1.85
44729076--44729395	123	2.5	123	79	7	295	33	16	12	37	1.86
44729315--44729547	95	2.5	95	84	5	310	31	16	14	38	1.88
44756757--44756783	9	3.0	9	100	0	54	33	0	33	33	1.58
44756834--44756891	6	9.7	6	76	23	52	53	3	0	43	1.17
44758881--44758914	16	2.1	16	88	0	50	38	17	2	41	1.65
44758915--44758968	18	3.0	18	71	10	56	46	11	0	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44760313--44760351	20	2.0	20	90	5	62	35	5	5	53	1.45
44761008--44761032	12	2.1	12	100	0	50	24	36	24	16	1.94
44761166--44761233	9	7.6	9	84	0	91	42	26	7	23	1.80
44761165--44761250	27	3.2	27	88	0	118	45	24	6	23	1.77
44768670--44768703	15	2.3	15	94	0	59	58	0	8	32	1.29
44777108--44777312	100	2.0	100	98	0	392	30	17	19	32	1.95
44778596--44778652	21	2.8	20	69	10	51	36	1	14	47	1.54
44780483--44780596	40	2.9	41	88	3	171	40	21	18	19	1.92
44786273--44786312	20	2.0	20	95	0	71	32	25	12	30	1.92
44804246--44804532	44	6.4	45	67	7	154	31	18	22	27	1.97
44804246--44804546	133	2.2	132	78	4	327	31	18	21	27	1.97
44804388--44804570	89	2.1	88	79	4	190	32	18	21	27	1.96
44807847--44808030	43	4.3	43	85	0	235	19	18	34	28	1.95
44810069--44810474	47	8.6	47	91	3	636	29	30	7	32	1.86
44810069--44810474	142	2.9	143	93	1	701	29	30	7	32	1.86
44814489--44814760	40	6.8	40	93	0	463	24	27	22	25	2.00
44816172--44816713	47	11.6	47	89	3	826	29	29	7	33	1.85
44816172--44816713	96	5.8	94	90	4	826	29	29	7	33	1.85
44816172--44816713	231	2.3	236	92	2	905	29	29	7	33	1.85
44821202--44821338	42	3.3	42	80	0	157	41	18	22	17	1.90
44821230--44821360	21	6.3	21	68	4	68	39	16	23	19	1.92
44821423--44821494	24	3.0	24	84	8	92	25	22	4	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44827452--44827493	22	2.0	21	85	4	57	73	0	26	0	0.83
44828869--44828907	18	2.2	18	85	0	51	48	10	7	33	1.66
44829002--44829055	18	2.9	19	83	10	67	53	9	0	37	1.33
44829019--44829055	19	2.0	18	89	5	56	56	10	0	32	1.34
44829190--44829222	16	2.0	17	88	5	50	33	3	12	51	1.54
44829861--44829913	16	3.3	16	76	10	63	35	24	5	33	1.79
44831073--44831146	4	17.0	4	77	18	53	0	21	5	72	1.04
44831074--44831125	24	2.2	24	89	0	77	0	23	3	73	1.00
44832151--44832200	25	2.0	25	88	7	75	44	0	6	50	1.26
44834931--44834968	20	1.9	20	88	0	58	42	0	13	44	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222