genome.fa.s15.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  160  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51481117--51481154	20	1.9	20	88	0	58	52	2	23	21	1.59
51488059--51488245	50	3.8	49	80	4	207	28	21	27	21	1.99
51488455--51488505	20	2.5	20	75	12	59	56	5	23	13	1.59
51489656--51490910	76	16.4	76	83	4	1284	27	17	20	34	1.96
51489648--51490865	152	8.0	152	83	3	1432	27	17	20	33	1.96
51489655--51490871	227	5.3	226	87	4	1502	27	17	20	33	1.96
51490941--51491017	41	1.9	41	84	5	104	37	7	1	53	1.38
51495932--51495985	16	3.4	16	82	2	74	85	7	1	5	0.81
51495932--51495985	24	2.3	23	90	3	81	85	7	1	5	0.81
51495932--51495985	8	6.9	8	82	4	65	85	7	1	5	0.81
51496676--51496854	93	1.9	96	87	4	265	28	15	7	48	1.72
51497328--51497385	24	2.4	24	91	0	89	36	10	22	31	1.88
51497623--51498549	85	10.8	84	70	10	518	32	22	19	25	1.97
51497487--51498559	44	25.0	43	70	10	503	32	22	19	25	1.97
51497488--51498559	129	8.3	129	89	0	1588	32	22	19	25	1.97
51500586--51500662	41	1.9	41	84	5	104	37	7	1	53	1.38
51504235--51504304	28	2.5	28	100	0	140	22	24	17	35	1.95
51505509--51505568	27	2.2	27	78	0	66	78	0	3	18	0.89
51510709--51510738	5	6.0	5	92	0	51	36	0	3	60	1.14
51513790--51513814	7	3.6	7	100	0	50	32	0	0	68	0.90
51520041--51520100	23	2.5	24	78	13	70	21	16	40	21	1.92
51521625--51521662	14	2.8	14	84	4	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51524628--51524658	15	2.0	16	93	6	55	12	0	16	70	1.16
51525025--51525336	44	6.9	43	71	15	143	27	20	18	32	1.97
51524983--51525293	142	2.2	142	94	0	543	27	20	19	32	1.97
51525070--51525468	186	2.1	186	90	0	611	27	19	19	33	1.96
51525207--51525337	44	3.0	44	88	0	190	26	21	19	32	1.97
51527398--51527474	31	2.5	30	87	2	100	9	9	11	70	1.35
51527452--51527488	6	5.7	7	90	9	53	10	0	13	75	1.04
51534824--51535550	50	14.5	49	63	9	223	24	25	21	28	1.99
51534825--51535544	303	2.4	300	87	3	1034	24	25	21	28	1.99
51534783--51535544	100	7.6	100	88	1	997	24	25	22	28	1.99
51536928--51536972	14	3.1	15	84	12	58	13	20	0	66	1.24
51540471--51540518	21	2.2	23	78	14	57	8	20	6	64	1.43
51540993--51541039	22	2.1	22	100	0	94	14	36	17	31	1.90
51540996--51541044	22	2.3	21	93	6	82	12	36	16	34	1.86
51543387--51543441	22	2.6	21	88	2	74	52	3	5	38	1.42
51543756--51543816	3	21.0	3	73	6	54	59	8	0	32	1.27
51548203--51548249	18	2.6	17	87	12	67	74	4	14	6	1.17
51548834--51548864	15	2.0	16	93	6	55	70	16	0	12	1.16
51550654--51550698	21	2.1	22	83	4	56	26	4	4	64	1.32
51560688--51560725	11	3.2	12	92	7	60	0	52	0	47	1.00
51561190--51561259	3	23.3	3	74	11	63	31	1	5	61	1.28
51561201--51561262	23	2.8	22	87	4	81	32	1	8	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51561196--51561270	23	3.2	23	80	10	64	32	2	9	56	1.45
51561287--51561334	24	2.0	24	84	12	62	29	4	0	66	1.10
51572817--51573072	130	2.0	131	85	5	349	30	19	23	26	1.98
51572866--51574316	230	6.4	218	76	13	992	31	17	23	28	1.97
51573986--51574255	142	1.9	141	83	6	348	30	17	22	28	1.97
51574172--51574441	142	1.9	141	83	6	348	30	17	22	28	1.97
51573212--51574509	186	7.0	186	99	0	2578	31	17	22	28	1.96
51574523--51574622	46	2.2	46	81	3	121	22	22	25	31	1.98
51574696--51574808	41	2.8	40	93	2	190	29	23	21	26	1.99
51575184--51575208	8	3.1	8	100	0	50	12	52	12	24	1.72
51575697--51575734	11	3.2	12	92	7	60	0	52	0	47	1.00
51576200--51576270	3	23.3	3	74	8	63	30	1	5	61	1.27
51576212--51576273	23	2.8	22	87	4	81	32	1	8	58	1.37
51576207--51576281	23	3.2	23	80	10	64	32	2	9	56	1.45
51576300--51576347	24	2.0	24	84	12	62	29	4	0	66	1.10
51582423--51582608	93	1.9	94	86	7	259	49	3	1	45	1.29
51588984--51589040	29	2.0	28	82	3	69	59	8	0	31	1.28
51589043--51589095	12	4.0	12	73	21	52	67	1	0	30	1.01
51589003--51589092	29	3.1	28	81	12	85	63	3	0	33	1.11
51588992--51589095	19	5.3	19	76	9	59	64	2	0	32	1.08
51588992--51589121	10	13.2	9	74	16	91	61	3	0	33	1.19
51590586--51590624	21	1.9	21	89	5	62	53	0	7	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51592250--51592322	3	24.7	3	88	2	112	4	30	0	65	1.11
51600590--51600624	18	1.9	18	94	0	61	25	40	28	5	1.78
51610900--51610941	22	1.9	22	100	0	84	16	9	16	57	1.65
51613868--51613901	3	11.3	3	93	0	59	0	29	0	70	0.87
51618101--51618127	3	9.0	3	100	0	54	0	33	0	66	0.92
51622110--51622152	18	2.4	18	88	0	59	41	44	2	11	1.53
51622256--51622295	9	4.4	9	83	0	53	27	7	20	45	1.78
51623952--51624032	25	3.3	25	79	5	76	16	22	20	40	1.91
51623968--51624046	25	3.2	25	81	1	79	16	24	21	37	1.93
51624009--51624143	48	2.8	49	75	3	128	19	27	20	32	1.97
51624014--51624157	24	5.9	24	71	5	94	19	27	21	31	1.97
51624098--51624169	25	2.8	26	83	8	87	20	26	22	30	1.98
51626799--51627238	239	1.9	232	84	6	595	35	9	8	46	1.66
51635515--51635584	20	3.7	18	80	14	70	37	0	5	57	1.23
51635526--51635585	19	3.2	18	79	11	66	35	0	5	60	1.19
51638310--51638358	24	2.0	25	84	8	64	57	6	0	36	1.24
51639149--51639182	16	2.1	17	88	5	52	67	8	17	5	1.37
51639144--51639200	20	2.7	22	82	17	68	64	7	22	5	1.38
51639942--51640505	100	5.6	100	84	2	305	24	19	23	32	1.97
51640023--51640507	50	9.7	50	72	2	283	24	20	22	32	1.97
51640039--51640513	200	2.4	200	88	0	709	24	20	22	32	1.97
51640039--51640506	100	4.7	100	86	3	622	24	20	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51640724--51641397	44	14.7	44	67	16	264	27	21	18	32	1.97
51640574--51641273	142	4.9	141	94	0	1129	26	20	19	33	1.97
51641008--51641444	44	9.8	43	71	12	245	27	21	19	32	1.97
51641142--51641457	176	1.8	174	95	1	578	27	21	19	31	1.97
51642667--51642727	7	9.0	7	85	7	90	13	16	1	68	1.28
51642667--51642727	13	4.5	14	83	8	90	13	16	1	68	1.28
51642667--51642726	20	3.0	20	90	0	102	13	16	1	68	1.29
51642667--51642727	27	2.3	27	88	5	88	13	16	1	68	1.28
51643593--51643681	47	1.9	46	80	13	103	12	10	6	70	1.32
51648115--51648163	24	2.0	25	84	8	64	57	6	0	36	1.24
51648949--51649002	19	2.6	22	77	19	62	62	7	22	7	1.46
51653718--51653998	139	2.0	139	99	0	553	38	16	12	32	1.86
51654480--51654531	18	3.2	16	82	12	61	69	0	1	28	0.99
51654899--51654927	15	1.9	15	100	0	58	41	6	13	37	1.72
51659898--51660085	40	4.7	40	95	0	313	22	26	20	30	1.98
51679787--51679830	22	2.1	22	83	8	56	45	0	4	50	1.22
51711817--51711962	50	2.9	50	80	6	170	23	27	20	28	1.99
51723250--51723423	85	2.0	85	97	0	330	51	13	5	29	1.64
51728870--51728938	32	2.2	32	82	7	88	62	4	1	31	1.24
51729017--51729068	23	2.3	22	81	12	61	50	7	9	32	1.64
51731565--51731798	50	4.6	50	80	5	238	24	28	20	26	1.99
51740545--51740671	27	4.7	27	85	3	168	33	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51740545--51740675	53	2.5	53	85	5	176	33	18	22	25	1.96
51740703--51740746	23	1.9	23	95	0	79	22	4	25	47	1.70
51740737--51740789	24	2.2	24	86	6	72	16	9	26	47	1.77
51740961--51741133	32	5.5	31	80	4	179	20	19	19	39	1.92
51740959--51741116	64	2.5	64	84	0	199	21	20	19	37	1.94
51743573--51743627	21	2.6	21	82	8	58	25	14	21	38	1.92
51750937--51751008	20	3.7	19	80	16	85	58	9	0	31	1.31
51750937--51751013	19	4.1	19	79	15	72	57	9	0	33	1.30
51751018--51751061	19	2.2	21	84	8	56	63	2	2	31	1.19
51752449--51752497	18	2.5	19	83	9	55	40	0	2	57	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222