genome.fa.s15.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  102  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32328089--32328169	12	6.8	12	69	17	53	12	24	1	61	1.38
32328104--32328159	18	3.0	20	68	26	59	10	26	0	62	1.28
32333272--32333334	21	3.0	21	88	2	81	33	31	4	30	1.78
32335442--32335503	13	4.8	13	84	7	81	72	8	3	16	1.21
32335442--32335504	26	2.4	27	92	5	103	71	7	3	17	1.23
32335541--32335598	16	3.7	15	93	6	98	63	5	12	18	1.46
32335543--32335599	17	3.5	17	92	4	91	66	5	10	17	1.40
32340913--32340945	11	3.1	11	82	8	50	30	12	33	24	1.91
32344395--32344456	29	2.1	30	82	8	74	6	20	3	69	1.25
32344415--32344466	27	1.9	27	85	14	72	1	23	1	73	1.04
32344410--32344466	29	2.0	29	83	10	73	3	24	3	68	1.21
32346623--32346651	10	2.7	11	94	5	51	13	3	0	82	0.79
32347464--32347496	11	3.1	11	82	8	50	30	12	33	24	1.91
32350630--32350667	19	2.0	19	100	0	76	36	21	21	21	1.95
32363302--32363571	40	6.8	40	91	3	436	23	28	21	26	1.99
32363302--32363571	82	3.4	80	92	3	445	23	28	21	26	1.99
32368003--32368219	107	2.0	112	92	6	374	29	27	18	23	1.98
32380683--32380768	43	2.0	43	88	4	129	50	2	22	25	1.61
32383249--32383490	27	9.3	27	82	8	250	41	22	19	16	1.90
32383361--32383399	19	2.1	19	85	0	51	41	33	12	12	1.82
32383304--32383451	73	2.0	73	84	2	190	41	25	17	15	1.88
32383277--32383478	100	2.0	100	82	1	244	42	23	17	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32383667--32383717	26	2.0	26	88	7	77	15	25	23	35	1.94
32389921--32390149	60	3.8	60	78	5	266	24	24	13	37	1.92
32389926--32390141	120	1.8	119	87	1	324	25	23	13	37	1.92
32390261--32390357	50	2.0	50	81	2	115	25	22	18	32	1.97
32391831--32391903	29	2.5	29	95	0	128	31	9	13	45	1.76
32393079--32393121	14	3.1	14	96	0	77	72	2	6	18	1.19
32395670--32395753	20	4.1	20	81	6	105	25	29	26	19	1.98
32396941--32396973	18	1.9	17	88	11	50	30	15	12	42	1.83
32398033--32398131	27	3.7	27	78	5	110	28	9	21	41	1.83
32398279--32398313	17	2.0	18	88	5	54	17	42	25	14	1.86
32400490--32400711	27	8.2	27	86	4	304	19	18	20	41	1.91
32405056--32405248	50	3.8	50	85	0	251	27	22	28	21	1.99
32408691--32409334	47	13.4	47	90	3	883	32	9	28	29	1.88
32408693--32409275	145	4.0	145	92	3	931	32	8	28	30	1.87
32411351--32411453	43	2.4	43	98	0	197	23	14	35	26	1.93
32411435--32411508	29	2.6	29	89	4	105	25	16	32	25	1.96
32411823--32412085	40	6.6	40	85	1	298	24	23	28	23	2.00
32415292--32415878	47	12.4	47	87	6	767	33	9	28	28	1.88
32415294--32415827	98	5.6	95	88	7	757	32	8	28	29	1.87
32415404--32415818	133	3.0	133	89	6	641	33	9	28	28	1.88
32415301--32415863	180	3.0	180	85	5	732	32	9	29	28	1.88
32421758--32421793	17	2.1	17	94	0	63	52	25	0	22	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32427751--32427839	45	2.0	45	90	0	142	34	23	16	24	1.95
32432974--32433147	50	3.5	50	80	0	195	20	29	22	27	1.99
32442542--32443111	47	12.1	47	93	0	933	32	8	29	28	1.88
32443230--32443308	37	2.1	37	88	4	115	25	18	30	25	1.98
32445201--32445274	29	2.6	29	89	4	105	25	16	32	25	1.96
32445583--32445970	40	9.7	39	86	5	232	24	21	28	25	1.99
32445583--32446042	80	5.8	80	88	3	524	24	21	28	25	1.99
32445583--32446042	120	3.9	120	84	4	517	24	21	28	25	1.99
32445701--32446055	40	8.9	40	88	1	473	24	21	28	25	1.99
32461843--32461867	5	5.0	5	100	0	50	20	0	0	80	0.72
32472425--32472780	182	2.0	183	95	0	642	27	4	35	32	1.76
32473714--32473755	22	2.0	21	86	9	59	9	21	40	28	1.84
32473832--32473946	27	4.2	28	84	6	148	40	21	16	20	1.91
32474113--32474215	26	4.0	26	83	0	116	18	21	25	34	1.96
32479273--32479316	23	1.9	23	90	0	70	43	25	4	27	1.74
32496303--32496611	117	2.6	118	89	5	468	23	29	20	26	1.99
32496303--32496611	40	7.9	40	88	5	463	23	29	20	26	1.99
32504617--32504972	40	8.9	40	93	0	597	24	28	20	26	1.99
32507447--32507494	16	3.0	16	81	0	60	37	25	22	14	1.92
32509988--32510030	20	2.1	21	86	4	61	18	23	11	46	1.82
32514561--32514884	107	3.0	108	85	1	445	38	16	16	28	1.90
32519522--32519561	18	2.2	18	86	0	53	10	25	2	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32541381--32542085	44	15.7	44	68	13	272	29	20	17	31	1.96
32541557--32541982	96	4.7	91	73	12	319	30	21	15	32	1.95
32541551--32541995	180	2.5	181	86	3	592	31	20	16	31	1.95
32541698--32541982	89	3.2	89	72	13	294	30	23	15	30	1.95
32548001--32548059	27	2.2	27	78	6	66	66	6	6	20	1.39
32548013--32548425	26	15.8	25	70	17	209	61	4	4	29	1.36
32548146--32548424	50	5.5	51	76	11	180	61	5	3	30	1.34
32548194--32548425	81	3.0	76	77	13	213	63	4	3	29	1.28
32548250--32548389	14	9.9	14	66	21	69	64	2	2	31	1.17
32548176--32548425	50	4.9	49	76	13	190	63	4	3	29	1.29
32548176--32548459	26	11.1	25	75	15	194	64	4	3	28	1.29
32548414--32548459	23	1.9	25	86	8	69	71	4	2	21	1.14
32557031--32557093	24	2.7	23	75	22	67	22	6	9	61	1.49
32561439--32561729	27	10.8	27	80	9	235	31	17	24	26	1.97
32561446--32561729	54	5.3	54	86	6	326	32	16	24	27	1.96
32561446--32561672	81	2.8	80	84	6	296	32	16	24	25	1.96
32561473--32561727	81	3.1	81	87	6	340	31	16	25	27	1.96
32561746--32561843	24	4.1	24	89	0	133	27	8	17	46	1.76
32562030--32562197	32	5.3	32	83	0	212	22	19	19	38	1.93
32562026--32562196	64	2.7	64	87	0	254	22	19	18	38	1.93
32562199--32562258	22	2.7	22	76	0	57	20	23	16	40	1.91
32574348--32574372	11	2.3	11	100	0	50	40	24	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32584276--32584630	82	4.4	82	90	2	513	25	29	21	23	1.99
32584276--32584630	122	2.9	122	89	2	529	25	29	21	23	1.99
32584276--32584631	40	8.8	41	90	3	490	25	29	21	23	1.99
32586435--32586469	12	3.1	12	88	12	56	5	17	0	77	0.96
32588039--32588076	9	4.1	10	83	16	55	21	18	0	60	1.36
32594295--32594470	41	4.3	41	91	0	289	28	18	27	24	1.98
32596934--32597032	23	4.3	23	92	0	144	31	24	20	24	1.98
32603873--32603971	23	4.3	23	94	0	162	34	26	19	20	1.96
32611510--32611693	50	3.7	50	91	2	280	26	22	31	20	1.98
32621969--32622021	25	2.1	25	85	0	70	43	11	22	22	1.85
32625490--32625573	36	2.3	36	87	4	116	16	10	30	41	1.83
32629058--32629144	29	3.0	29	74	1	84	40	22	13	22	1.90
32631118--32631184	34	1.9	35	90	3	109	34	8	10	46	1.70
32635991--32636036	23	2.0	23	100	0	92	43	8	17	30	1.79
32642345--32642407	30	2.1	30	84	0	81	58	14	3	23	1.50
32645894--32646039	42	3.5	42	80	1	168	21	15	21	41	1.89
32660552--32660709	27	5.9	27	84	8	200	43	17	15	23	1.87
32660540--32660716	54	3.3	54	83	12	224	43	16	15	23	1.87
32660539--32660716	81	2.2	79	86	6	243	43	16	15	24	1.87
32660714--32661010	27	11.0	27	80	7	145	30	20	24	24	1.98
32660698--32661008	54	5.8	54	87	1	374	31	19	24	24	1.98
32660698--32661007	81	3.8	80	83	1	368	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32661074--32661157	24	3.5	24	88	1	116	26	5	21	46	1.74
32661222--32661286	27	2.4	27	83	14	82	20	24	23	32	1.98
32661240--32661292	27	2.0	27	81	7	63	22	26	20	30	1.98
32661274--32661333	26	2.3	26	88	0	93	16	21	25	36	1.94
32661342--32661519	32	5.6	32	82	4	198	24	21	17	36	1.94
32661344--32661518	64	2.7	64	86	1	244	25	21	17	36	1.95
32661340--32661532	96	2.0	95	86	1	269	23	20	17	37	1.94
32670321--32670607	50	5.6	50	80	3	236	29	20	27	22	1.98
32670321--32670562	100	2.4	102	81	6	267	28	21	28	22	1.99
32677900--32677936	18	2.0	19	94	5	67	48	2	0	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222