genome.fa.s15.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  220  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69654392--69654586	98	2.0	98	85	2	266	25	8	24	41	1.83
69654491--69655152	186	3.6	186	89	0	977	25	14	20	39	1.90
69655052--69655228	97	1.8	97	84	4	241	28	10	16	44	1.81
69659445--69659505	31	2.0	31	90	0	95	42	14	9	32	1.79
69666739--69666796	30	1.9	30	83	13	75	43	8	13	34	1.75
69667335--69667410	31	2.5	31	89	4	118	23	7	18	50	1.73
69667517--69667625	31	3.5	31	76	7	96	23	11	15	48	1.78
69673587--69673636	25	2.0	25	84	3	66	52	0	0	48	1.00
69681635--69681732	23	4.3	23	90	2	162	31	26	21	20	1.98
69681642--69681730	45	2.0	45	95	0	160	31	26	22	19	1.97
69689372--69689398	13	2.1	13	100	0	54	18	0	22	59	1.38
69693856--69693898	20	2.2	20	83	8	52	39	2	0	58	1.11
69700186--69700267	42	2.0	42	92	0	137	35	7	26	30	1.84
69700397--69700422	12	2.2	12	100	0	52	38	7	23	30	1.83
69700685--69700797	57	2.0	57	96	0	208	30	23	26	20	1.98
69702732--69702827	32	3.1	31	74	4	95	41	6	13	38	1.70
69708260--69708302	18	2.4	19	85	11	56	27	2	11	58	1.46
69708461--69708578	59	2.0	59	83	5	148	38	11	10	38	1.76
69710173--69711102	101	9.3	99	79	7	851	31	21	18	28	1.97
69710173--69711115	301	3.1	299	82	5	1042	30	21	18	28	1.97
69710201--69711102	402	2.2	400	87	1	1257	31	21	18	28	1.97
69715290--69715323	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69718123--69718163	21	2.0	21	90	0	64	29	21	29	19	1.98
69720068--69720101	16	2.1	16	88	0	50	50	14	17	17	1.79
69733682--69733725	16	2.8	16	85	0	61	18	11	20	50	1.77
69735926--69735972	24	2.1	24	84	11	64	42	0	0	57	0.98
69736942--69736975	16	2.1	16	94	0	59	50	8	5	35	1.58
69738904--69738951	20	2.5	19	83	6	60	58	2	0	39	1.10
69744885--69744937	27	2.0	26	82	14	63	9	26	1	62	1.36
69751305--69751363	31	1.9	30	82	3	73	22	10	20	47	1.79
69751331--69751398	21	3.1	21	79	14	66	19	11	20	48	1.80
69753171--69753216	24	2.0	23	87	12	67	50	8	19	21	1.75
69764865--69764902	20	1.9	19	94	5	67	39	0	2	57	1.12
69766988--69767650	194	3.4	194	86	2	934	25	12	20	42	1.87
69786259--69786319	32	1.9	32	83	12	81	45	13	11	29	1.78
69786463--69786493	16	1.9	16	93	0	53	51	12	6	29	1.65
69786520--69786555	16	2.2	16	90	0	54	47	16	0	36	1.47
69788167--69788508	169	2.0	169	91	1	560	39	12	4	42	1.64
69793141--69793165	9	2.8	9	100	0	50	44	0	0	56	0.99
69795481--69795611	46	2.9	46	97	1	246	45	40	9	4	1.58
69802266--69802295	15	2.0	15	100	0	60	53	13	13	20	1.72
69802306--69802492	66	2.8	66	89	2	286	33	7	13	45	1.72
69804703--69805405	350	2.0	351	88	3	1051	26	14	19	38	1.91
69810673--69810718	20	2.4	19	85	10	58	23	2	6	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69817546--69817602	18	3.1	18	70	9	51	36	5	15	42	1.70
69818844--69819145	75	4.0	75	92	1	462	14	20	29	35	1.93
69841064--69841088	6	4.2	6	100	0	50	32	0	16	52	1.44
69847245--69847380	67	2.0	67	95	2	247	30	14	18	36	1.91
69851317--69851348	2	16.0	2	100	0	64	0	0	50	50	1.00
69855916--69856006	31	3.0	30	73	15	80	26	13	13	47	1.79
69860261--69860358	50	2.0	50	100	0	196	39	22	16	21	1.92
69860393--69860424	15	2.1	15	100	0	64	21	21	18	37	1.94
69861359--69861411	21	2.5	21	87	0	79	32	35	9	22	1.86
69863965--69864107	54	2.5	57	84	5	184	21	20	18	39	1.92
69865858--69865891	15	2.2	16	89	5	52	32	0	0	67	0.91
69869384--69869431	23	2.1	23	100	0	96	43	4	12	39	1.62
69871764--69871853	45	2.0	45	100	0	180	40	13	13	33	1.83
69876847--69876889	18	2.4	18	84	0	59	25	32	9	32	1.88
69886221--69886261	21	2.0	21	90	4	66	34	2	2	60	1.23
69892748--69892781	10	3.4	10	100	0	68	38	0	0	61	0.96
69895515--69895614	49	2.0	49	100	0	200	40	19	14	27	1.89
69899529--69899579	11	4.6	11	75	18	52	29	0	11	58	1.33
69899527--69899597	33	2.2	33	100	0	142	32	0	11	56	1.35
69901545--69901587	20	2.1	20	91	4	68	20	6	9	62	1.48
69921508--69921560	26	2.0	26	100	0	106	54	15	18	11	1.70
69929119--69929153	4	8.8	4	100	0	70	25	0	22	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69930233--69930323	46	2.0	46	97	0	173	32	12	13	41	1.81
69935955--69936024	35	2.0	35	97	0	131	34	20	15	30	1.93
69936116--69936205	41	2.2	41	89	2	135	53	14	2	30	1.53
69955152--69955184	15	2.2	15	94	0	57	57	0	33	9	1.30
69956706--69956743	19	2.1	18	90	5	58	47	0	5	47	1.24
69959375--69959442	34	2.0	34	91	0	109	29	19	8	42	1.81
69961643--69961693	24	2.1	24	100	0	102	43	7	15	33	1.76
69964032--69964093	25	2.5	25	76	5	63	22	22	19	35	1.96
69967274--69967313	19	2.1	19	90	0	62	25	30	27	17	1.97
69968384--69968414	15	2.1	15	100	0	62	48	12	0	38	1.42
69985028--69985057	16	1.9	16	93	6	53	30	3	0	66	1.07
69988602--69988632	5	6.2	5	100	0	62	19	0	0	80	0.71
69994883--69994929	21	2.2	22	92	3	78	21	19	38	21	1.94
69999855--69999883	12	2.3	13	94	5	51	82	0	0	17	0.66
70000190--70000274	12	6.8	12	81	7	89	58	2	8	30	1.40
70000190--70000280	3	30.3	3	76	8	78	60	2	7	29	1.36
70001080--70001111	11	2.8	12	86	13	50	81	0	6	12	0.87
70001939--70002004	9	7.2	9	86	10	89	39	28	10	21	1.86
70001939--70002004	20	3.6	18	80	11	89	39	28	10	21	1.86
70001974--70002016	11	4.2	11	85	14	65	46	27	6	18	1.75
70012760--70012814	25	2.2	25	81	9	69	32	1	3	61	1.24
70017123--70017249	61	2.1	61	85	5	168	42	13	5	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70024736--70024802	31	2.2	31	86	0	89	26	17	14	40	1.89
70026819--70026876	30	2.0	27	83	9	71	53	3	0	43	1.17
70036961--70036991	12	2.6	12	100	0	62	9	61	22	6	1.50
70039679--70039725	21	2.2	22	85	11	62	34	8	0	57	1.29
70043711--70043760	22	2.4	21	75	24	52	50	0	0	50	1.00
70051573--70052075	264	1.9	263	90	1	792	33	19	12	35	1.89
70059066--70059090	4	6.2	4	100	0	50	76	0	0	24	0.80
70059899--70059963	32	2.1	29	86	8	85	55	9	7	27	1.59
70064547--70064920	188	2.0	190	89	3	585	20	10	24	43	1.84
70071823--70071898	31	2.5	31	87	4	111	22	14	11	51	1.75
70079987--70080022	5	7.8	5	82	17	51	38	0	0	61	0.96
70079995--70080027	17	2.0	16	94	5	57	36	0	0	63	0.95
70080571--70080642	36	2.0	36	97	0	135	30	15	4	50	1.63
70084936--70084971	8	4.6	8	93	6	65	22	0	11	66	1.22
70087743--70087777	16	2.2	16	94	0	61	40	11	5	42	1.65
70094194--70094254	27	2.2	27	86	13	81	52	0	0	47	1.00
70095033--70095383	188	1.9	188	86	1	508	41	15	6	36	1.73
70104483--70104551	31	2.2	31	76	0	75	42	4	15	37	1.68
70108776--70108926	75	2.0	75	98	0	293	47	8	10	33	1.69
70116541--70116601	31	2.0	31	87	3	88	40	13	8	37	1.74
70127540--70127584	19	2.4	19	88	7	65	64	4	2	28	1.25
70130850--70130897	4	12.0	4	90	0	78	22	2	25	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70133616--70133664	24	2.0	24	100	0	98	32	8	12	46	1.71
70134678--70134766	44	2.0	45	95	2	162	37	22	7	32	1.83
70136710--70136855	60	2.5	60	87	5	199	40	8	14	36	1.76
70141187--70141232	23	2.0	23	86	0	65	56	2	2	39	1.24
70148114--70148219	47	2.2	48	96	3	196	17	18	16	46	1.85
70154097--70154162	29	2.3	29	82	12	82	56	4	1	37	1.29
70155702--70155727	4	6.5	4	100	0	52	0	73	0	26	0.84
70169064--70169202	70	2.0	69	85	1	188	42	20	13	23	1.88
70173826--70173879	15	3.6	15	73	9	56	42	0	0	57	0.98
70173845--70173888	17	2.6	16	78	7	52	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222