genome.fa.s15.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  111  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35539972--35540016	23	2.0	23	95	0	81	37	28	4	28	1.77
35557727--35557760	8	4.4	8	96	3	61	73	0	0	26	0.83
35558663--35558716	24	2.2	24	86	0	72	20	11	16	51	1.74
35558857--35559051	32	6.1	31	80	9	214	21	19	20	39	1.93
35558857--35559051	64	3.1	63	83	6	236	21	19	20	39	1.93
35559043--35559107	22	3.0	21	75	4	67	18	20	16	44	1.87
35570634--35570698	28	2.3	28	84	5	87	13	18	1	66	1.33
35572483--35572529	22	2.3	20	82	10	51	44	17	4	34	1.68
35573218--35573255	10	3.8	10	83	13	51	26	15	28	28	1.96
35573220--35573268	20	2.5	20	93	0	80	24	18	32	24	1.97
35573739--35573818	37	2.1	39	95	4	146	46	5	27	21	1.72
35584640--35584851	40	5.3	40	82	2	239	33	16	28	21	1.95
35584649--35584852	80	2.6	79	84	2	264	35	17	27	19	1.94
35584777--35584835	20	3.0	20	68	9	57	38	15	28	16	1.89
35587987--35588035	25	2.0	25	84	15	66	26	12	12	48	1.75
35589089--35589267	96	1.9	96	89	0	277	32	14	17	35	1.91
35590257--35590320	28	2.3	28	80	0	83	17	21	35	25	1.95
35596764--35596805	23	1.9	23	85	9	61	54	11	9	23	1.66
35601403--35601446	19	2.4	18	80	3	52	63	6	4	25	1.38
35601565--35601888	165	2.0	165	94	0	567	37	9	22	30	1.86
35604786--35604970	29	6.3	29	76	9	108	37	14	25	22	1.92
35604897--35604970	30	2.5	30	86	4	96	36	12	24	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35604790--35605089	119	2.5	119	82	3	347	39	14	23	23	1.91
35604951--35605025	30	2.6	29	76	2	78	48	13	18	20	1.81
35606114--35606139	12	2.2	12	100	0	52	23	38	30	7	1.83
35609260--35609311	24	2.3	23	87	9	79	78	3	7	9	1.06
35609360--35609408	15	3.3	15	100	0	98	57	18	6	18	1.61
35614777--35614825	22	2.2	23	82	10	66	30	8	18	42	1.79
35617256--35617382	49	2.5	51	85	3	168	33	13	13	40	1.83
35619524--35619565	19	2.3	19	84	8	52	69	0	23	7	1.13
35622821--35622952	50	2.6	52	82	3	169	34	16	12	36	1.86
35625928--35625963	18	1.9	18	88	5	54	36	22	11	30	1.89
35629627--35629814	50	3.6	52	81	7	204	22	29	20	26	1.99
35629627--35629814	100	1.8	103	81	6	238	22	29	20	26	1.99
35630502--35630537	18	1.9	18	88	5	54	36	22	11	30	1.89
35632138--35632168	11	2.7	12	90	10	55	64	9	0	25	1.24
35637999--35638058	25	2.4	25	77	0	66	5	23	16	55	1.61
35638983--35639007	12	2.1	12	100	0	50	32	16	8	44	1.76
35641950--35642000	17	3.1	17	80	13	61	56	0	27	15	1.39
35657762--35657805	20	2.2	21	88	8	65	43	20	6	29	1.78
35659170--35659722	131	4.3	129	80	6	581	38	13	14	32	1.85
35664888--35664925	19	2.0	20	94	5	69	18	34	10	36	1.85
35671013--35671202	72	2.6	72	89	2	283	30	30	15	23	1.96
35674382--35674437	30	1.9	28	82	13	69	60	10	14	14	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35676397--35676468	33	2.2	33	87	5	101	11	27	6	54	1.61
35677653--35677683	2	15.5	2	100	0	62	0	48	0	51	1.00
35678783--35678937	72	2.1	73	87	1	222	32	28	12	25	1.93
35682229--35682328	41	2.5	40	78	13	100	67	5	11	17	1.39
35686455--35686565	58	1.9	58	94	0	195	18	13	20	46	1.83
35690132--35690173	21	2.0	21	90	0	66	40	23	0	35	1.55
35693486--35693525	18	2.2	18	86	4	53	12	27	0	60	1.33
35694585--35694623	15	2.7	15	92	4	62	17	12	5	64	1.46
35694660--35694718	13	4.7	13	91	4	95	20	1	5	72	1.12
35694660--35694718	25	2.4	25	91	5	93	20	1	5	72	1.12
35697833--35697890	19	2.9	21	73	17	61	5	20	3	70	1.21
35698954--35698997	22	2.0	22	90	0	70	36	4	36	22	1.75
35699789--35699855	31	2.1	32	81	13	77	31	29	11	26	1.92
35700129--35700187	30	2.0	30	83	6	75	28	15	25	30	1.96
35708485--35708527	18	2.2	20	92	8	72	37	0	18	44	1.50
35709965--35710081	41	2.7	43	88	3	157	29	23	22	24	1.99
35709970--35710088	44	2.8	41	83	7	157	27	21	23	26	1.99
35710170--35710920	50	15.1	50	69	6	353	25	22	22	30	1.99
35710142--35710920	100	7.8	99	82	4	890	25	22	22	30	1.99
35712167--35712213	5	9.0	5	84	11	51	0	17	4	78	0.90
35715402--35715458	19	2.9	20	79	10	64	45	12	17	24	1.83
35717757--35717799	18	2.2	20	92	8	72	37	0	18	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35729049--35729082	14	2.5	13	86	9	50	73	5	8	11	1.24
35729159--35729188	15	1.9	16	93	6	53	66	6	10	16	1.41
35729148--35729191	16	2.7	15	82	10	52	72	6	9	11	1.27
35732630--35733182	47	11.8	47	94	0	901	28	30	8	32	1.87
35736946--35737153	102	2.0	102	98	0	398	27	12	14	45	1.81
35746099--35746184	33	2.5	33	83	7	93	56	5	26	10	1.55
35761434--35761519	45	1.9	45	81	9	104	13	26	1	58	1.43
35761512--35761586	12	6.2	12	68	10	55	10	14	4	70	1.29
35761540--35761586	18	2.6	18	79	0	58	12	12	2	72	1.21
35762501--35762548	19	2.5	19	86	3	60	27	10	0	62	1.27
35769579--35769763	79	2.3	81	81	7	209	24	21	27	25	1.99
35769582--35769763	40	4.6	40	82	6	201	25	20	28	25	1.99
35769632--35769796	79	2.1	79	80	6	183	26	20	27	26	1.99
35777610--35777705	39	2.4	39	86	5	131	26	21	29	22	1.99
35794911--35795088	27	6.6	27	82	3	196	26	14	28	30	1.95
35794908--35795088	82	2.2	81	82	2	220	27	14	27	30	1.95
35796972--35797136	29	5.7	29	84	2	215	38	23	14	24	1.92
35796954--35797139	58	3.2	59	90	4	281	38	22	13	25	1.91
35796979--35797158	87	2.1	87	84	2	227	36	23	13	26	1.93
35796954--35797143	29	6.6	29	77	8	190	38	23	13	24	1.91
35801431--35801572	44	3.3	42	83	4	167	31	25	18	24	1.97
35801409--35801553	44	3.3	44	82	5	179	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35801641--35801674	16	2.1	16	88	0	50	55	8	0	35	1.31
35804203--35804235	13	2.5	13	95	0	57	21	45	6	27	1.75
35806146--35806177	16	2.0	16	93	0	55	31	0	21	46	1.52
35806873--35806919	14	3.3	14	90	3	67	51	25	0	23	1.49
35806873--35806935	15	4.3	15	89	2	67	49	28	0	22	1.50
35806878--35806941	22	2.9	22	77	9	67	48	29	0	21	1.51
35807134--35807183	14	3.5	14	79	15	57	32	44	0	24	1.54
35807145--35807192	22	2.2	22	92	0	78	35	45	0	18	1.50
35807124--35807185	14	4.4	14	74	11	54	33	43	0	22	1.54
35807589--35807833	41	5.8	41	81	10	269	34	26	17	20	1.96
35807665--35807878	41	5.2	40	86	3	178	34	27	17	21	1.95
35812804--35812866	28	2.2	28	94	0	108	31	20	25	22	1.98
35812972--35813052	26	3.1	26	89	0	117	37	25	18	18	1.94
35820683--35820772	28	3.2	28	90	1	146	32	22	24	21	1.98
35822366--35822432	26	2.5	26	87	2	89	35	16	20	26	1.94
35822914--35822961	20	2.4	20	85	0	69	29	35	18	16	1.93
35831443--35831497	27	2.0	27	92	0	92	34	5	7	52	1.52
35842661--35842932	40	6.8	40	93	0	463	30	20	27	22	1.98
35846776--35846855	25	3.2	25	89	1	117	32	20	20	27	1.97
35849595--35849635	19	2.2	19	95	0	73	65	4	26	2	1.25
35854267--35854294	13	2.2	13	100	0	56	64	14	7	14	1.48
35856949--35857067	56	2.1	56	98	0	229	38	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864299--35864350	21	2.5	22	71	9	54	59	9	0	30	1.29
35867900--35867982	26	3.2	26	83	10	107	27	25	6	40	1.79
35868490--35868571	41	2.0	41	92	0	137	31	20	21	25	1.98
35876531--35876584	14	3.8	14	76	11	56	1	22	1	74	1.02
35892930--35893024	49	2.0	49	85	6	131	25	14	20	40	1.90
35894981--35895042	27	2.3	27	77	0	70	32	19	16	32	1.94
35897179--35897226	3	15.7	3	78	4	51	37	6	0	56	1.25
35897552--35897831	147	1.9	146	86	6	406	43	4	9	42	1.58
35897819--35897870	21	2.6	21	71	17	56	40	3	13	42	1.62
35907755--35907827	20	3.6	20	72	9	58	36	12	27	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222