genome.fa.s15.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  32  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9575474--9575585	43	2.6	43	79	13	131	24	21	26	27	1.99
9582956--9583007	25	2.0	26	85	3	70	46	1	1	50	1.23
9582980--9583019	20	2.0	20	90	4	64	35	0	5	60	1.19
9590124--9590162	20	2.0	20	90	5	62	35	0	5	58	1.20
9591076--9591130	13	4.4	13	72	25	55	21	14	5	58	1.57
9591076--9591153	37	2.1	37	85	7	104	21	15	8	53	1.69
9593222--9593273	21	2.5	22	75	12	56	53	0	3	42	1.19
9596059--9596111	6	8.5	6	80	15	63	81	1	0	16	0.79
9596059--9596110	19	2.8	20	82	8	65	80	1	0	17	0.80
9596059--9596112	20	2.8	19	81	10	65	79	1	0	18	0.82
9596915--9596941	13	2.1	13	100	0	54	85	0	0	14	0.61
9599608--9599811	104	2.0	104	88	0	300	28	28	11	30	1.92
9599953--9600150	100	2.0	100	97	0	378	34	8	13	43	1.74
9605758--9605828	35	2.0	35	100	0	142	25	11	30	32	1.91
9612160--9612198	21	1.9	20	89	5	60	23	5	25	46	1.73
9613379--9613439	23	2.8	22	78	7	63	47	3	1	47	1.28
9620319--9620556	50	4.7	50	82	5	246	27	19	28	23	1.99
9620364--9620541	98	1.8	99	85	1	250	27	20	28	23	1.99
9620372--9620595	49	4.5	50	80	7	145	29	20	26	23	1.99
9620864--9620925	16	4.1	15	75	24	60	35	1	14	48	1.54
9620865--9620930	31	2.1	31	94	0	114	36	1	13	48	1.52
9620880--9620930	15	3.4	14	73	26	50	35	1	13	49	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9620873--9620925	13	3.7	13	75	22	52	35	1	15	47	1.56
9622387--9622498	52	2.2	51	82	6	127	44	14	15	25	1.84
9624506--9624550	22	2.0	22	91	0	72	33	2	15	48	1.57
9628277--9628321	22	2.0	22	91	0	72	33	2	15	48	1.57
9634539--9634664	40	3.1	40	87	10	193	34	3	0	61	1.12
9634547--9634653	11	10.4	11	69	24	65	37	3	0	58	1.16
9634558--9634620	29	2.1	29	83	13	76	36	3	0	60	1.13
9634635--9634684	23	2.2	22	79	6	55	32	2	4	62	1.25
9636780--9637544	408	1.9	408	82	4	961	28	19	14	37	1.91
9638047--9638122	14	5.3	14	73	7	55	26	9	17	47	1.77
9638119--9638648	190	2.9	178	80	8	511	28	19	11	40	1.87
9644185--9644282	23	4.3	23	90	2	162	20	21	26	31	1.98
9644187--9644275	45	2.0	45	95	0	160	19	22	26	31	1.97
9655639--9655734	23	4.3	23	90	7	162	31	27	20	20	1.98
9655646--9655734	43	2.0	44	95	2	162	31	26	21	20	1.98
9668027--9668051	7	3.6	7	100	0	50	24	28	16	32	1.96
9672559--9672599	21	2.0	21	90	0	64	19	29	21	29	1.98
9681709--9681749	20	2.0	20	95	0	73	43	7	14	34	1.73
9686586--9686645	25	2.4	25	81	8	79	16	25	26	31	1.96
9687797--9687827	12	2.6	12	94	0	53	25	38	25	9	1.86
9697212--9697239	9	3.1	9	100	0	56	35	0	0	64	0.94
9700112--9700153	18	2.2	20	87	8	61	50	0	9	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9701218--9701278	24	2.5	25	79	10	74	50	8	0	40	1.32
9704119--9704166	18	2.7	18	71	12	53	64	0	4	31	1.12
9704364--9704405	3	14.0	3	100	0	84	66	0	0	33	0.92
9704364--9704426	18	3.5	19	89	4	69	63	1	3	31	1.19
9710120--9710191	5	13.4	5	77	18	56	80	1	4	13	0.92
9710113--9710192	12	6.7	12	77	11	83	80	1	3	15	0.92
9710113--9710152	17	2.4	16	88	12	62	77	0	0	22	0.77
9710113--9710179	22	3.1	22	77	14	68	79	1	4	14	0.97
9710116--9710191	18	4.2	18	78	9	75	80	1	3	14	0.92
9710112--9710193	25	3.3	24	77	11	78	78	1	3	17	0.97
9713302--9713836	270	2.0	270	90	2	851	32	19	19	28	1.96
9714381--9714416	15	2.5	14	86	8	54	44	8	0	47	1.33
9716683--9716761	24	3.3	23	74	15	70	16	24	21	37	1.93
9723993--9724040	17	2.8	17	78	6	53	8	14	31	45	1.74
9729700--9729747	24	2.0	24	95	0	87	60	0	22	16	1.36
9741774--9741798	7	3.6	7	100	0	50	32	16	28	24	1.96
9748654--9748718	22	3.0	22	71	13	71	21	15	12	50	1.76
9752305--9752374	35	2.0	36	88	2	106	30	2	4	62	1.28
9752318--9752407	17	5.3	17	71	12	69	34	2	2	61	1.21
9753758--9753798	16	2.4	18	76	19	52	17	7	4	70	1.28
9758296--9758346	26	2.0	24	85	7	66	31	0	1	66	1.03
9768158--9768200	18	2.4	18	88	0	68	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9768117--9768212	28	3.4	27	70	18	79	61	0	1	37	1.03
9772462--9772505	13	3.3	13	93	3	70	47	0	6	45	1.29
9776466--9776532	31	2.2	31	81	10	75	46	2	0	50	1.16
9781111--9781206	42	2.3	42	75	13	97	28	29	17	25	1.98
9784408--9784448	18	2.2	19	87	12	59	24	0	2	73	0.96
9790847--9790915	16	4.4	16	71	17	56	57	0	2	39	1.13
9793450--9793491	14	2.7	15	82	14	50	33	2	0	64	1.07
9805841--9805914	23	3.0	24	80	9	69	54	2	1	41	1.23
9813507--9813545	18	2.2	17	86	4	51	25	0	2	71	0.98
9825018--9825242	110	2.1	110	99	0	443	33	10	16	40	1.82
9830123--9830307	59	3.1	58	66	17	153	41	3	7	48	1.46
9830117--9830434	66	5.2	64	65	23	189	41	2	6	49	1.43
9830151--9830458	61	5.1	61	66	17	212	41	2	6	49	1.41
9830078--9830487	120	3.4	120	94	0	705	42	2	5	49	1.38
9830323--9830374	15	3.6	15	80	12	56	44	0	1	53	1.11
9830439--9830489	18	3.0	18	78	18	56	47	0	0	52	1.00
9830619--9830728	45	2.6	41	81	8	125	31	28	5	34	1.80
9830707--9830776	16	4.4	16	90	0	86	32	32	0	34	1.58
9830995--9831314	43	7.4	44	75	6	217	37	17	17	26	1.93
9831451--9831554	38	2.7	38	92	0	163	37	18	11	32	1.87
9832177--9832222	20	2.3	19	82	14	56	43	8	21	26	1.81
9837228--9837270	9	5.0	8	86	8	50	41	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9837228--9837270	18	2.5	16	85	14	59	41	2	0	55	1.12
9837231--9837265	9	3.8	9	96	3	61	42	2	0	54	1.15
9838587--9838962	126	3.0	124	85	2	529	30	16	23	29	1.96
9841304--9841334	15	2.1	15	93	0	53	22	0	29	48	1.51
9841319--9841780	7	65.4	7	64	22	114	19	0	34	45	1.54
9841313--9841773	22	21.3	22	78	10	416	19	0	34	45	1.54
9841362--9841431	27	2.6	27	86	6	88	20	0	34	45	1.51
9841319--9841474	70	2.2	70	89	3	233	19	0	35	44	1.51
9841651--9841753	30	3.6	28	79	16	88	20	0	33	46	1.51
9841310--9841773	21	21.4	22	76	12	304	19	0	34	45	1.54
9841764--9841819	22	2.6	22	77	2	69	17	3	30	48	1.65
9842421--9842460	18	2.2	18	90	0	62	42	7	30	20	1.79
9844352--9844394	22	1.9	23	90	4	70	41	0	27	30	1.56
9845874--9845996	58	2.1	59	89	4	187	17	30	18	33	1.95
9850319--9850443	44	2.8	44	78	2	126	23	25	20	30	1.99
9850536--9850832	85	3.5	86	89	1	452	23	24	23	28	1.99
9852476--9852524	19	2.5	19	87	12	64	8	14	10	67	1.42
9852526--9852568	6	7.5	6	87	7	63	16	0	11	72	1.13
9852526--9852575	12	4.5	11	87	7	66	16	0	12	72	1.13
9852530--9852575	18	2.6	17	86	6	65	17	0	10	71	1.13
9857588--9857630	15	2.8	16	79	10	54	60	2	0	37	1.10
9864820--9864863	23	1.9	24	86	9	65	36	2	4	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9864846--9864881	15	2.2	16	90	9	56	19	2	0	77	0.88
9864860--9864910	19	2.7	19	85	8	61	13	5	1	78	1.02
9864862--9864894	12	2.6	13	85	9	50	15	3	0	81	0.80
9864860--9864910	18	2.7	19	85	8	61	13	5	1	78	1.02
9865020--9865080	30	2.0	30	84	6	79	37	13	11	37	1.80
9865434--9865460	14	1.9	14	100	0	54	62	7	0	29	1.22
9865512--9865619	10	11.5	10	72	12	77	62	0	2	33	1.15
9865508--9865585	27	2.9	27	83	7	88	65	0	2	32	1.06
9865519--9865599	37	2.2	36	84	4	101	62	0	3	33	1.12
9865511--9865581	18	3.8	20	73	16	64	67	0	2	29	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222