genome.fa.s15.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  210  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66495853--66496178	46	7.6	46	80	14	392	34	15	21	28	1.94
66495889--66496043	36	4.0	36	79	15	184	36	16	20	27	1.93
66495853--66496178	82	3.9	82	85	8	451	34	15	21	28	1.94
66495853--66496178	128	2.6	127	74	13	371	34	15	21	28	1.94
66498550--66498657	33	3.3	32	82	2	126	20	9	29	40	1.83
66498551--66498669	33	3.6	33	79	6	125	20	10	29	40	1.85
66498597--66498679	33	2.5	33	86	3	96	22	10	30	36	1.89
66502728--66503014	51	5.6	51	89	3	384	29	25	16	29	1.96
66503484--66503548	30	2.2	30	82	0	76	32	23	7	36	1.83
66507005--66507029	10	2.5	10	100	0	50	52	0	32	16	1.44
66517813--66517855	21	2.0	22	95	4	79	74	2	0	23	0.93
66524577--66524605	15	1.9	15	100	0	58	20	27	17	34	1.95
66529597--66529623	14	1.9	14	100	0	54	40	0	0	59	0.98
66532473--66532513	3	13.7	3	100	0	82	68	0	0	31	0.90
66538783--66538820	14	2.7	14	88	8	51	42	47	0	10	1.38
66538908--66538946	7	5.6	7	87	0	60	46	25	0	28	1.53
66538912--66538951	14	2.9	14	88	0	53	42	25	0	32	1.55
66540041--66540088	25	2.0	25	83	4	62	43	14	10	31	1.79
66546090--66546134	23	1.9	24	86	4	65	53	0	4	42	1.21
66549857--66549881	7	3.6	7	100	0	50	40	0	0	60	0.97
66552068--66552103	16	2.2	17	90	5	56	50	0	0	50	1.00
66558006--66558036	15	2.1	15	100	0	62	19	29	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66565753--66565790	7	5.7	7	84	9	53	71	10	18	0	1.14
66565750--66565800	14	3.8	13	80	10	59	68	9	21	0	1.18
66569417--66569481	28	2.2	28	84	13	78	43	0	0	56	0.99
66576813--66576841	14	2.0	15	93	6	51	27	0	20	51	1.47
66577012--66577068	28	2.0	28	86	6	80	56	0	7	36	1.27
66577665--66577841	64	2.8	64	85	6	220	32	6	16	43	1.75
66577975--66578063	41	2.2	41	97	0	169	25	17	21	34	1.96
66577975--66578079	41	2.6	41	92	3	158	23	18	23	34	1.96
66581641--66582072	51	8.5	50	76	7	347	27	15	25	31	1.95
66581640--66581874	102	2.3	102	91	2	382	28	14	26	31	1.94
66581641--66582025	151	2.5	153	82	5	433	27	15	26	31	1.95
66586680--66586730	21	2.4	21	86	0	66	23	11	39	25	1.89
66586846--66586893	19	2.6	19	83	3	62	56	0	2	41	1.11
66590602--66590704	43	2.4	43	79	6	102	38	24	14	22	1.91
66614013--66614061	25	2.0	25	88	4	73	32	0	6	61	1.21
66613965--66614153	93	2.0	92	89	1	288	34	4	5	55	1.43
66614183--66614212	9	3.4	9	90	9	53	36	0	0	63	0.95
66616799--66616899	50	2.0	50	92	0	166	39	6	16	36	1.76
66617301--66617821	123	4.1	124	88	4	681	27	17	17	38	1.92
66617345--66617821	249	1.9	246	86	3	681	26	17	16	40	1.90
66617896--66617983	34	2.6	32	81	15	97	43	13	1	42	1.51
66617886--66617998	34	3.3	32	74	12	84	43	18	1	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66622124--66622192	24	2.9	24	69	16	63	36	1	0	62	1.04
66640956--66640985	6	5.0	6	91	0	51	50	0	3	46	1.18
66643814--66643842	2	14.5	2	100	0	58	51	0	48	0	1.00
66647978--66648009	15	2.1	16	88	11	50	37	0	3	59	1.13
66648116--66648170	25	2.1	26	80	12	60	41	1	5	50	1.36
66649051--66649096	6	7.7	6	90	0	65	36	19	0	43	1.51
66651691--66651727	17	2.2	17	95	4	67	24	0	37	37	1.56
66651963--66651999	19	2.0	19	85	15	51	54	0	0	45	1.00
66652041--66652226	59	3.1	58	69	19	157	51	3	2	42	1.34
66651943--66652232	120	2.4	120	89	3	456	49	4	2	43	1.35
66658197--66658252	24	2.3	23	77	14	60	71	0	16	12	1.15
66658212--66658245	15	2.2	16	89	5	52	79	0	14	5	0.91
66669564--66669628	11	6.0	11	81	3	78	21	30	0	47	1.51
66674314--66674354	6	6.8	6	100	0	82	14	0	68	17	1.22
66681658--66681708	18	2.7	19	78	6	59	35	19	0	45	1.51
66689762--66689830	34	2.0	34	88	0	102	21	4	24	49	1.68
66690245--66690281	13	2.8	14	84	12	51	43	24	0	32	1.55
66690792--66690858	30	2.3	29	86	2	89	49	7	14	28	1.71
66691335--66691418	42	2.0	42	95	0	150	55	7	9	27	1.58
66693212--66693257	24	1.9	24	82	8	58	41	8	0	50	1.33
66694780--66694815	11	3.2	11	88	4	54	19	33	2	44	1.65
66700172--66700213	21	2.1	20	82	8	50	54	2	38	4	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66708276--66708365	28	3.1	28	74	14	92	25	12	10	52	1.70
66708752--66708895	60	2.4	60	81	4	157	49	11	14	25	1.76
66709953--66709992	14	2.9	14	84	0	53	32	7	17	42	1.77
66709961--66710027	35	1.9	35	87	3	100	31	10	13	44	1.77
66709976--66710015	20	2.0	20	85	0	53	27	12	12	47	1.77
66714601--66714662	10	6.5	10	73	17	51	59	0	4	35	1.19
66714601--66714662	18	3.3	19	78	17	58	59	0	4	35	1.19
66714601--66714676	29	2.6	28	79	6	80	59	0	6	34	1.24
66714729--66714775	4	11.8	4	100	0	94	25	0	23	51	1.49
66715616--66715750	17	7.4	17	62	14	54	48	13	4	34	1.62
66715610--66715735	20	6.8	18	64	14	60	46	14	4	34	1.66
66715610--66715755	37	3.9	37	93	0	247	46	14	4	34	1.66
66719964--66720002	6	6.5	6	81	0	51	46	2	28	23	1.65
66720628--66720668	19	2.2	19	86	4	57	12	34	2	51	1.52
66722850--66722886	9	4.1	9	89	0	56	48	13	8	29	1.71
66727200--66727257	28	2.2	27	84	9	75	65	12	10	12	1.47
66728757--66728816	18	3.3	18	83	9	68	48	0	1	50	1.11
66730243--66730311	16	4.2	16	87	3	102	27	1	34	36	1.66
66730243--66730311	33	2.1	32	89	2	102	27	1	34	36	1.66
66730547--66730581	18	2.0	17	88	5	52	54	0	0	45	0.99
66730788--66730822	18	2.0	17	88	5	52	54	0	0	45	0.99
66730530--66731511	120	8.2	120	95	2	1785	47	5	2	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66731146--66731180	18	2.0	17	88	5	52	54	0	0	45	0.99
66730530--66731511	358	2.7	360	96	1	1837	47	5	2	43	1.39
66730530--66731511	478	2.0	480	96	1	1821	47	5	2	43	1.39
66734532--66734641	33	3.3	33	81	11	136	31	8	17	42	1.78
66734588--66734804	51	4.0	51	85	15	303	28	7	18	46	1.76
66734638--66734742	33	3.3	33	63	12	92	27	7	18	46	1.76
66734687--66734714	12	2.3	12	100	0	56	21	0	21	57	1.41
66734636--66734765	63	2.1	63	100	0	260	27	6	18	47	1.72
66734588--66734804	114	1.9	113	97	2	409	28	7	18	46	1.76
66734871--66735051	86	2.1	86	97	1	346	46	7	4	40	1.54
66739505--66739531	12	2.2	12	100	0	54	44	0	7	48	1.31
66739852--66739904	21	2.5	21	84	0	70	32	35	7	24	1.84
66741807--66741834	3	9.3	3	100	0	56	67	0	32	0	0.91
66752636--66752691	18	3.1	18	84	0	76	8	8	46	35	1.67
66755220--66755280	30	2.2	28	83	13	74	47	16	34	1	1.56
66755791--66755841	26	1.9	27	96	4	95	25	0	0	74	0.82
66755782--66755821	19	2.0	20	90	9	64	30	0	0	70	0.88
66755794--66755851	26	2.2	26	84	6	73	24	0	5	70	1.07
66759395--66759462	35	2.0	34	85	2	91	39	16	8	35	1.79
66761045--66761102	30	1.9	30	83	13	75	36	8	1	53	1.42
66762452--66762539	35	2.5	35	80	8	99	39	0	0	60	0.97
66762477--66762537	25	2.6	24	85	12	74	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66762487--66762545	26	2.3	25	80	11	66	38	0	0	61	0.96
66762934--66762995	19	3.0	22	71	20	62	62	0	12	24	1.30
66772943--66772994	7	7.7	7	91	4	81	26	0	0	73	0.84
66773006--66773049	20	2.2	20	84	8	54	36	0	4	59	1.18
66779585--66779645	29	2.1	28	84	3	77	24	14	18	42	1.88
66791479--66791508	15	2.0	15	100	0	60	53	6	0	40	1.27
66791556--66791586	16	1.9	16	93	0	53	48	0	0	51	1.00
66793154--66793451	126	2.4	126	88	0	452	32	18	21	27	1.97
66798951--66799014	11	6.0	10	83	16	76	46	3	29	20	1.66
66798951--66799012	22	2.8	23	90	7	101	45	3	30	20	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222