genome.fa.s15.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  99  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31205710--31205873	27	6.1	27	76	9	131	23	21	18	35	1.95
31205779--31205885	27	4.0	26	78	8	108	21	21	20	36	1.95
31207324--31207357	17	2.0	17	88	0	50	50	14	20	14	1.78
31208041--31208242	100	2.0	100	94	0	350	29	13	15	42	1.85
31212616--31212918	40	7.6	40	88	2	378	27	28	20	24	1.99
31212850--31212927	40	1.9	41	82	10	97	26	28	21	23	1.99
31220401--31220457	28	2.0	28	82	0	69	26	26	22	24	2.00
31230951--31230980	6	4.8	6	92	8	51	30	0	0	70	0.88
31238977--31239069	27	3.4	27	82	5	107	27	16	25	30	1.96
31240873--31240926	20	2.7	21	77	8	67	38	16	22	22	1.93
31245029--31245071	21	2.0	21	82	8	52	39	25	6	27	1.81
31258686--31258787	33	3.1	33	86	5	145	41	7	23	27	1.82
31265049--31265316	114	2.4	114	83	4	312	20	31	10	37	1.87
31268884--31269022	63	2.2	61	83	9	167	29	9	19	41	1.82
31273699--31273847	28	5.4	28	90	3	203	32	29	13	24	1.93
31273699--31273822	55	2.3	55	94	0	212	31	29	13	25	1.94
31276522--31276604	42	2.0	42	97	0	157	39	9	18	32	1.83
31280639--31280777	63	2.2	61	81	9	158	29	8	19	42	1.81
31281546--31281592	18	2.7	18	83	12	62	68	4	21	6	1.30
31285255--31285445	40	4.8	40	89	0	292	37	18	30	14	1.90
31285271--31285442	20	8.6	20	69	10	118	36	18	30	15	1.91
31286715--31287291	43	13.3	43	79	4	496	38	23	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31289383--31289618	115	2.0	117	95	2	431	44	17	13	25	1.85
31291812--31291944	23	5.8	23	89	0	194	31	27	21	18	1.97
31291812--31291944	69	1.9	69	92	0	221	31	27	21	18	1.97
31293733--31293812	38	2.1	38	97	0	151	58	10	3	27	1.47
31299060--31299117	24	2.3	26	82	8	66	31	6	10	51	1.62
31304002--31304038	9	4.1	9	92	0	65	45	8	10	35	1.69
31304051--31304107	29	1.9	30	82	3	71	31	15	1	50	1.54
31306085--31306116	17	1.9	17	93	6	57	43	0	3	53	1.16
31306054--31306095	5	8.4	5	100	0	84	40	0	0	59	0.97
31306132--31306171	17	2.3	17	91	4	62	75	7	12	5	1.18
31306561--31306607	22	2.0	23	84	12	60	42	0	27	29	1.56
31306855--31306891	18	2.1	18	89	0	56	37	0	16	45	1.47
31306863--31306903	6	6.8	6	94	0	64	34	2	9	53	1.47
31306863--31306918	6	9.3	6	92	0	58	33	3	7	55	1.45
31308538--31308593	22	2.5	22	82	0	58	66	14	8	10	1.45
31321337--31321376	14	2.9	14	84	0	53	32	7	17	42	1.77
31321360--31321399	20	2.0	20	90	0	62	27	10	12	50	1.72
31321345--31321411	34	1.9	35	90	3	109	31	8	13	46	1.74
31321339--31321415	14	5.0	15	71	20	52	32	9	15	42	1.78
31330113--31330140	12	2.3	12	100	0	56	32	17	14	35	1.90
31330790--31331074	139	2.1	139	92	0	473	44	5	8	41	1.58
31331050--31331199	75	2.0	75	90	2	239	29	14	9	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31331809--31331866	27	2.1	27	100	0	116	32	22	6	37	1.81
31336918--31336951	17	2.0	17	88	11	52	52	0	23	23	1.47
31339154--31339184	14	2.2	14	94	0	53	38	0	9	51	1.35
31340472--31340501	10	3.0	10	90	0	51	10	0	26	63	1.26
31340755--31340792	20	1.9	20	100	0	76	42	5	5	47	1.48
31344701--31344833	40	3.4	40	72	7	110	27	17	23	32	1.96
31350879--31350908	10	3.0	10	90	0	51	10	0	26	63	1.26
31353913--31354163	27	9.4	27	84	4	305	20	17	19	43	1.88
31353913--31354163	53	4.7	54	91	1	357	20	17	19	43	1.88
31357918--31357966	17	2.6	19	84	12	57	51	0	2	46	1.12
31359818--31359856	20	1.9	21	84	5	53	10	10	25	53	1.66
31360867--31360895	12	2.3	13	94	5	51	20	6	6	65	1.40
31369349--31369464	43	2.7	43	82	1	144	31	24	18	25	1.98
31375273--31375425	41	3.7	42	78	6	132	30	16	24	28	1.96
31377801--31377854	23	2.3	23	90	0	81	38	31	3	25	1.74
31385505--31385554	23	2.2	24	80	20	63	58	6	0	36	1.23
31386890--31387187	31	9.7	31	87	2	424	43	18	9	28	1.81
31386890--31387198	61	5.0	61	90	0	465	44	18	9	28	1.80
31393244--31393281	7	5.4	7	100	0	76	13	0	0	86	0.56
31394483--31394903	31	13.7	31	89	2	629	44	18	9	28	1.80
31394483--31394914	61	7.0	61	93	1	686	44	18	9	28	1.80
31397189--31397290	42	2.4	43	83	1	125	24	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31402126--31402166	14	2.9	15	78	7	50	36	7	14	41	1.74
31402135--31402201	34	1.9	35	87	3	100	32	8	11	46	1.72
31402182--31402268	32	2.7	31	77	8	93	25	10	19	44	1.82
31402298--31402325	14	2.0	14	100	0	56	42	0	0	57	0.99
31402511--31402655	72	2.0	73	97	1	274	44	20	8	26	1.81
31403602--31403670	35	1.9	36	94	2	122	52	17	2	27	1.59
31405111--31405166	17	3.1	17	72	18	58	21	12	25	41	1.88
31407380--31407477	25	4.1	25	69	12	80	43	10	18	27	1.82
31407395--31407488	46	2.0	46	100	0	188	42	10	15	30	1.81
31412639--31412672	17	2.0	17	100	0	68	35	17	0	47	1.48
31413404--31413436	13	2.5	13	100	0	66	39	33	21	6	1.78
31417022--31417051	15	1.9	16	93	6	53	50	6	0	43	1.28
31417056--31417353	59	5.1	58	66	15	189	52	5	1	41	1.32
31417227--31417259	18	1.9	17	88	11	50	57	0	3	39	1.14
31416976--31417436	123	3.8	120	92	4	738	50	4	1	42	1.35
31417286--31417332	23	2.0	24	84	15	64	53	4	2	40	1.32
31417313--31417371	26	2.3	25	85	8	82	57	0	0	42	0.98
31417350--31417382	18	1.9	17	88	11	50	57	0	3	39	1.14
31417213--31417404	64	3.1	64	66	18	186	50	4	3	42	1.39
31417229--31417426	59	3.3	58	70	17	186	48	5	4	42	1.44
31417244--31417436	64	3.1	64	69	18	206	47	5	4	42	1.46
31422188--31422300	41	2.8	41	95	0	208	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31423178--31423281	49	2.1	49	91	3	165	50	8	9	30	1.65
31425050--31425115	33	2.0	33	96	0	123	37	3	18	40	1.66
31425322--31425358	19	1.9	19	94	0	65	35	0	21	43	1.53
31425659--31425693	18	1.9	18	88	0	52	37	0	5	57	1.23
31435896--31435965	13	5.4	13	74	16	56	42	2	2	51	1.31
31435893--31435960	18	3.3	22	62	26	58	41	2	2	52	1.31
31435900--31435979	39	2.1	39	100	0	160	41	5	2	51	1.37
31436927--31436981	24	2.2	26	81	12	71	45	0	1	52	1.11
31437194--31437229	16	2.2	16	100	0	72	38	36	0	25	1.56
31437475--31437521	22	2.1	23	92	4	78	40	2	0	57	1.11
31437475--31437522	20	2.2	21	85	10	62	41	2	0	56	1.11
31439245--31439291	23	2.0	23	95	0	85	14	21	27	36	1.93
31440158--31440214	24	2.3	24	87	6	87	22	8	17	50	1.73
31441816--31441902	45	2.0	44	82	11	106	40	27	3	28	1.73
31445142--31445340	43	4.6	43	74	12	156	28	16	25	30	1.96
31451105--31451206	49	2.2	45	84	7	132	30	15	7	46	1.74
31455600--31455699	49	2.0	49	81	7	114	31	15	11	43	1.81
31461973--31461997	12	2.1	12	100	0	50	20	0	8	72	1.10
31470270--31470310	16	2.6	16	80	0	55	53	7	9	29	1.60
31471030--31471066	19	1.9	19	88	0	56	45	0	2	51	1.15
31471539--31471574	16	2.2	16	90	0	54	75	0	0	25	0.81
31486464--31486552	45	2.0	45	90	0	142	35	23	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31486563--31486746	51	3.6	50	78	3	199	30	27	17	24	1.97
31486561--31486745	101	1.8	101	89	3	291	30	27	17	24	1.97
31487985--31488022	19	2.0	19	90	10	60	52	10	10	26	1.68
31490269--31490353	42	2.0	44	86	9	122	65	0	1	32	1.00
31491274--31491321	6	7.8	6	84	13	53	77	0	2	20	0.88
31491275--31491321	16	3.0	16	75	6	51	76	0	2	21	0.89
31493881--31493914	13	2.5	13	85	4	50	79	0	5	14	0.91
31505730--31505754	7	3.6	7	100	0	50	48	12	0	40	1.40
31512396--31512787	140	2.8	137	88	3	590	41	8	5	44	1.58
31516163--31516212	18	2.8	17	76	8	55	8	34	16	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222