genome.fa.s15.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  151  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48754362--48754402	20	2.0	20	100	0	82	36	24	9	29	1.87
48754318--48754449	67	2.0	67	98	0	255	31	28	7	32	1.85
48756193--48756238	23	2.0	23	83	8	58	30	26	0	43	1.55
48760408--48760437	11	2.6	11	94	5	51	36	3	0	60	1.14
48760722--48760774	21	2.5	20	76	8	52	35	1	11	50	1.49
48760941--48761099	25	6.3	25	75	9	112	30	20	24	25	1.99
48765769--48765830	21	3.0	21	68	0	52	14	24	17	43	1.86
48765760--48765888	42	3.1	42	80	2	125	15	23	16	44	1.85
48767948--48767989	20	2.2	20	87	12	61	57	4	21	16	1.58
48770800--48770965	23	7.1	23	73	6	109	19	1	34	45	1.58
48770800--48770917	48	2.5	48	84	1	148	21	1	33	43	1.63
48771225--48771278	22	2.4	22	84	3	63	61	5	1	31	1.30
48771239--48771280	22	1.9	22	95	0	75	66	0	2	30	1.04
48776416--48776655	102	2.4	102	88	0	363	27	25	16	30	1.97
48776415--48776658	51	4.8	51	76	0	218	27	25	16	30	1.97
48776661--48776822	51	3.2	50	84	3	189	27	23	17	32	1.97
48776487--48776927	174	2.5	174	87	2	591	27	23	16	31	1.96
48778303--48778437	44	3.0	44	82	6	164	17	23	18	40	1.91
48778303--48778420	46	2.6	45	84	7	159	17	23	17	40	1.91
48779340--48779398	22	2.7	23	79	10	61	5	20	0	74	1.00
48782912--48782946	16	2.2	16	94	0	61	45	22	14	17	1.84
48792439--48792623	79	2.3	82	83	7	229	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48792420--48792623	40	5.1	40	81	8	229	24	27	22	25	2.00
48800481--48800665	79	2.3	82	83	7	229	24	27	22	24	2.00
48800462--48800665	40	5.1	40	81	8	229	24	27	22	25	2.00
48816845--48817029	79	2.3	82	83	7	229	24	27	22	24	2.00
48816826--48817029	40	5.1	40	81	8	229	24	27	22	25	2.00
48824896--48825080	79	2.3	80	81	9	209	25	27	21	24	1.99
48824877--48825080	40	5.1	40	78	8	211	25	27	21	25	1.99
48827000--48827050	7	7.3	7	85	14	70	70	1	13	13	1.25
48828363--48829038	50	13.5	49	70	4	429	34	23	18	23	1.96
48828337--48829121	100	7.8	100	89	0	1072	34	23	18	23	1.96
48829419--48829490	26	2.8	26	85	8	103	43	37	5	13	1.68
48829684--48829708	13	1.9	13	100	0	50	24	0	4	72	1.02
48830803--48830829	4	6.8	4	100	0	54	51	22	0	25	1.48
48832275--48832325	3	17.0	3	87	0	75	62	1	3	31	1.24
48832275--48832316	15	2.8	15	100	0	84	61	0	4	33	1.17
48832331--48832378	21	2.2	23	82	14	57	54	0	12	33	1.38
48838375--48838427	22	2.4	21	77	22	56	39	5	7	47	1.56
48838377--48838424	20	2.3	21	85	7	62	39	6	8	45	1.59
48840275--48840309	18	1.9	18	88	11	54	74	0	2	22	0.95
48846407--48846494	39	2.3	38	90	2	131	39	5	21	32	1.77
48847718--48847978	132	2.0	132	93	0	450	31	27	15	24	1.96
48852268--48852398	40	3.3	39	77	7	140	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48852266--48852371	37	2.7	38	81	5	124	25	16	27	30	1.97
48854887--48854998	20	5.7	20	75	5	102	44	16	9	28	1.80
48854968--48855029	19	3.2	19	81	4	88	40	22	9	27	1.85
48855334--48855466	19	7.0	19	68	10	83	26	12	15	45	1.82
48856148--48856192	20	2.3	20	84	3	65	44	0	6	48	1.29
48859165--48859208	20	2.2	20	84	8	54	40	38	0	20	1.53
48859269--48859362	35	2.7	34	79	11	111	19	3	31	45	1.66
48865948--48865975	14	2.0	14	100	0	56	42	28	0	28	1.56
48870015--48870066	24	2.2	24	85	0	68	50	7	3	38	1.50
48875072--48875129	9	6.4	9	91	0	89	46	22	6	24	1.76
48879303--48879340	20	1.9	20	84	10	51	50	2	0	47	1.15
48900432--48900472	21	2.0	21	85	4	57	53	0	2	43	1.13
48922282--48922333	26	2.0	26	100	0	104	23	19	26	30	1.98
48922322--48922545	40	5.6	40	85	7	278	24	22	27	25	2.00
48922321--48922578	119	2.2	119	81	6	292	25	22	27	25	2.00
48939240--48939305	27	2.4	27	85	7	80	22	19	25	31	1.98
48939523--48939599	14	5.5	14	72	6	66	20	20	29	28	1.98
48939510--48939613	28	3.7	27	79	5	118	24	22	26	26	2.00
48939559--48939615	14	4.1	14	83	0	69	26	19	26	28	1.99
48948998--48949047	22	2.2	23	82	13	68	20	10	6	64	1.45
48949001--48949050	21	2.3	23	89	6	77	20	10	8	62	1.52
48954385--48954418	3	11.7	3	93	6	61	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48954362--48954436	11	6.8	12	82	15	60	69	0	30	0	0.89
48954362--48954436	8	10.2	8	83	15	60	69	0	30	0	0.89
48954601--48954707	52	2.0	53	94	1	189	31	0	14	53	1.42
48954901--48955219	103	3.1	104	83	8	382	27	0	15	56	1.43
48957222--48957255	13	2.6	13	85	0	50	41	38	0	20	1.53
48957357--48957450	9	10.4	9	85	0	125	24	8	24	42	1.82
48958196--48958369	78	2.3	78	91	2	280	27	6	8	58	1.51
48958196--48958369	76	2.3	75	89	5	258	27	6	8	58	1.51
48961197--48961282	41	2.1	40	82	8	102	34	3	11	50	1.56
48961407--48961456	23	2.2	23	100	0	100	52	32	8	8	1.60
48980789--48980845	29	2.0	29	86	6	80	31	1	1	64	1.13
48983125--48983164	21	2.0	20	85	5	53	60	5	0	35	1.19
48984822--48984976	72	2.2	72	78	0	166	33	24	16	25	1.95
48991462--48991496	5	7.4	5	93	6	56	37	0	0	62	0.95
49003209--49003243	16	2.1	17	89	5	54	54	5	0	40	1.24
49007546--49007584	10	4.0	10	83	6	53	51	0	0	48	1.00
49008173--49008220	25	1.9	25	95	0	87	60	4	0	35	1.16
49008227--49008295	21	3.5	19	81	13	77	49	0	8	42	1.34
49008272--49008334	29	2.2	29	83	11	76	53	0	6	39	1.26
49008290--49008388	19	5.4	17	73	12	63	57	1	4	37	1.24
49008625--49008659	17	2.1	17	89	10	54	77	2	0	20	0.90
49008717--49008775	15	3.8	16	78	15	61	66	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49009254--49009301	3	16.0	3	100	0	96	0	33	0	66	0.92
49009962--49010005	16	2.8	16	71	0	52	13	0	31	54	1.39
49011618--49011766	43	3.5	43	80	3	160	28	14	26	30	1.95
49012065--49012095	15	2.1	15	100	0	62	29	6	25	38	1.81
49013706--49013753	16	3.1	15	90	6	69	64	2	2	31	1.16
49013702--49013753	8	6.5	8	82	8	61	65	1	1	30	1.14
49013701--49013757	24	2.4	24	79	5	71	64	1	3	29	1.20
49013868--49013925	23	2.8	19	75	14	62	56	6	5	31	1.47
49013906--49013952	24	1.9	25	86	4	69	51	6	8	34	1.58
49013884--49013968	22	3.7	23	76	13	68	55	7	7	30	1.54
49013983--49014045	16	4.1	16	75	19	53	61	0	3	34	1.12
49013993--49014126	25	5.6	25	71	11	93	58	2	3	35	1.28
49014606--49014739	30	4.5	29	86	1	160	20	3	47	27	1.67
49015598--49015660	14	4.5	14	82	7	74	60	4	14	20	1.52
49015525--49015749	117	1.9	117	85	3	310	43	16	17	22	1.87
49015715--49015749	14	2.5	14	90	0	52	60	5	20	14	1.54
49015627--49015819	85	2.2	86	85	5	255	39	18	17	24	1.91
49015909--49015971	14	4.5	14	82	7	65	61	3	12	22	1.45
49015912--49015944	15	2.2	15	94	0	57	69	0	9	21	1.15
49015928--49015971	13	3.3	13	81	6	52	63	4	13	18	1.46
49015954--49016726	75	10.0	76	77	12	610	32	20	17	28	1.96
49015954--49017126	77	15.2	76	74	14	758	33	20	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49016180--49016214	14	2.5	14	95	0	61	57	2	20	20	1.54
49016103--49016290	89	2.1	90	89	5	281	35	18	19	26	1.95
49016376--49017493	235	4.9	221	81	11	1087	33	21	16	28	1.95
49016365--49017126	72	10.2	72	74	12	565	34	20	16	28	1.94
49016194--49017494	379	3.4	374	81	8	1405	33	20	17	28	1.95
49016439--49017509	307	3.5	303	79	11	1089	34	21	16	28	1.95
49017112--49017140	14	2.1	14	100	0	58	65	6	13	13	1.45
49017032--49017214	90	2.1	87	87	5	260	37	19	18	25	1.93
49016961--49017358	163	2.6	157	83	10	502	34	21	17	26	1.95
49017120--49017493	72	5.0	72	78	10	360	33	21	17	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222