genome.fa.s15.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  133  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43135769--43135816	18	2.8	17	81	18	55	14	41	0	43	1.45
43144472--43144505	16	2.1	16	88	0	50	23	5	11	58	1.55
43146262--43148107	613	3.0	613	98	0	3602	28	22	17	32	1.96
43160400--43160541	40	3.5	40	82	9	173	35	18	27	19	1.95
43164459--43164549	37	2.5	37	85	7	114	23	14	25	37	1.92
43168531--43168775	51	4.8	51	84	6	270	29	25	18	26	1.98
43168878--43168902	10	2.5	10	100	0	50	8	28	0	64	1.22
43170778--43170839	30	2.1	30	82	17	76	29	16	8	46	1.75
43170999--43171122	50	2.5	49	82	3	142	33	22	19	24	1.97
43171058--43171122	24	2.6	25	76	9	71	33	21	23	21	1.97
43188621--43188650	15	1.9	16	93	6	53	46	0	13	40	1.43
43199676--43199807	41	3.2	40	77	10	122	26	12	26	34	1.93
43201123--43201177	25	2.2	26	81	15	71	45	0	21	32	1.52
43203269--43203504	27	8.7	27	82	0	274	41	19	15	23	1.90
43203269--43203504	81	2.9	80	89	3	332	41	19	15	23	1.90
43204518--43204553	17	2.1	17	89	0	54	44	5	22	27	1.75
43208601--43208646	21	2.2	21	88	0	65	47	6	21	23	1.74
43211819--43211849	13	2.4	13	94	0	53	41	19	16	22	1.89
43219440--43219480	10	4.0	10	83	3	55	82	2	14	0	0.76
43219441--43219481	15	2.6	17	81	14	52	85	2	12	0	0.70
43241828--43241890	19	3.4	18	73	16	58	52	1	3	42	1.27
43252971--43253046	9	8.4	9	85	0	98	38	25	11	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43256138--43256174	18	2.1	17	90	5	56	54	8	0	37	1.30
43256545--43256590	4	11.8	4	90	4	76	2	23	0	73	0.94
43263545--43263617	36	2.0	36	94	0	128	32	31	0	35	1.58
43265024--43265050	6	4.5	6	100	0	54	14	0	0	85	0.61
43265479--43265532	17	3.1	18	76	10	58	38	9	0	51	1.34
43265993--43266195	23	8.6	23	71	12	153	29	18	15	37	1.91
43265980--43266193	48	4.5	44	78	12	212	28	18	15	37	1.91
43266185--43266282	30	3.3	30	82	2	119	27	26	19	26	1.99
43266202--43266282	15	5.4	15	80	0	90	27	24	19	28	1.99
43278428--43278499	26	2.9	25	72	19	71	26	1	22	50	1.58
43288088--43288158	27	2.6	27	80	4	81	25	19	26	28	1.99
43291194--43291276	43	1.9	43	82	0	103	27	30	21	20	1.98
43292394--43292463	25	2.8	25	74	8	79	22	18	27	31	1.97
43299610--43299698	25	3.6	25	78	0	88	20	20	23	35	1.95
43301260--43301580	40	8.0	40	87	0	453	35	17	31	16	1.92
43314009--43314202	27	7.2	27	85	2	219	43	19	14	22	1.87
43314009--43314177	81	2.1	81	90	0	266	43	18	14	23	1.86
43314009--43314202	81	2.4	81	86	1	255	43	19	14	22	1.87
43314389--43314463	26	2.9	26	87	0	96	21	14	20	44	1.87
43314572--43314647	27	2.8	27	97	0	143	25	23	26	25	2.00
43316285--43316317	17	2.0	17	88	5	50	36	0	6	57	1.23
43334496--43334530	13	2.6	13	86	4	52	60	5	5	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43337998--43338067	26	2.8	25	69	20	58	25	1	22	50	1.58
43342501--43342721	27	8.2	27	83	1	183	35	18	20	25	1.95
43342513--43342721	54	3.9	54	82	4	217	35	19	20	24	1.95
43342501--43342721	81	2.7	81	82	3	250	35	18	20	25	1.95
43342729--43342781	24	2.1	24	86	6	70	22	16	20	39	1.92
43342948--43343088	32	4.4	32	80	0	149	21	19	19	39	1.92
43344139--43344176	3	12.7	3	94	0	67	65	2	0	31	1.06
43345369--43345453	38	2.2	38	81	4	100	32	24	11	30	1.91
43346994--43347029	17	2.1	17	89	0	54	27	0	36	36	1.57
43353826--43353898	22	3.3	22	71	3	65	28	4	31	35	1.76
43363135--43363345	50	4.2	50	95	0	368	25	21	31	20	1.98
43363082--43363345	100	2.6	100	87	3	375	26	21	30	21	1.98
43366061--43366102	21	2.0	20	82	13	50	23	45	9	21	1.81
43366925--43366965	3	13.7	3	94	0	73	68	0	31	0	0.90
43368170--43368195	9	2.9	9	100	0	52	57	0	0	42	0.98
43368263--43368328	31	2.2	30	84	13	82	43	0	0	56	0.99
43370215--43370260	23	2.1	22	92	8	76	30	6	4	58	1.43
43370689--43370730	19	2.2	20	82	4	50	30	7	11	50	1.66
43376158--43376734	263	2.2	264	88	0	843	27	28	23	20	1.99
43376158--43376734	88	6.6	88	88	0	805	27	28	23	20	1.99
43376734--43377091	44	8.3	44	78	9	333	26	18	25	29	1.98
43376734--43377091	88	4.1	87	80	7	370	26	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43376772--43377091	126	2.5	129	84	6	434	26	18	25	29	1.98
43376734--43377063	170	1.9	170	83	3	423	26	17	25	30	1.97
43377412--43377531	44	2.8	44	80	3	118	30	20	21	27	1.98
43377414--43377667	128	2.0	129	82	3	307	30	20	21	27	1.98
43379450--43379633	40	4.7	40	79	11	168	25	21	27	25	2.00
43379451--43379616	79	2.1	79	80	12	182	26	22	27	23	2.00
43395944--43395983	15	2.7	15	88	0	53	30	15	10	45	1.78
43397028--43397067	21	2.0	20	90	5	62	42	20	20	17	1.89
43401216--43401291	34	2.2	34	92	0	125	47	14	5	32	1.67
43405402--43405446	19	2.4	18	88	3	63	26	11	4	57	1.52
43415986--43416026	3	13.7	3	89	0	64	70	0	29	0	0.87
43417381--43417416	15	2.3	16	85	9	56	55	0	2	41	1.14
43432681--43432721	3	13.7	3	89	0	64	70	0	29	0	0.87
43435245--43435304	24	2.5	24	78	5	59	15	5	5	75	1.15
43437015--43437059	22	2.0	22	83	8	56	40	11	0	48	1.39
43438987--43439014	14	2.0	14	100	0	56	35	7	0	57	1.26
43441969--43442075	50	2.1	50	85	0	151	20	29	23	26	1.99
43452263--43452307	21	2.1	22	87	4	65	57	0	2	40	1.11
43452435--43452459	10	2.5	10	100	0	50	72	0	0	28	0.86
43458964--43459431	233	2.0	233	98	0	900	39	17	11	32	1.85
43474660--43474695	17	2.2	16	90	5	54	8	25	0	66	1.19
43478868--43478966	49	2.0	49	100	0	198	41	10	16	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43485910--43485959	23	2.2	23	88	0	73	26	10	22	42	1.84
43489335--43489360	12	2.2	12	100	0	52	7	15	30	46	1.74
43489445--43489583	72	1.9	71	82	1	170	29	23	22	24	1.99
43489515--43489954	113	3.9	112	85	3	526	25	20	25	27	1.99
43490189--43490272	38	2.2	36	85	8	107	20	2	38	39	1.65
43490415--43490466	20	2.6	20	85	8	70	15	0	38	46	1.46
43491089--43491392	148	2.1	148	88	1	448	25	14	21	38	1.91
43491559--43491586	14	2.0	14	100	0	56	28	50	0	21	1.49
43495574--43495624	21	2.4	21	87	6	68	33	15	47	3	1.64
43496104--43496338	42	5.6	40	75	11	165	26	19	22	31	1.98
43496008--43496345	84	4.0	83	75	8	256	26	20	21	30	1.98
43496011--43496350	43	8.0	43	74	8	232	26	20	21	30	1.98
43501155--43501300	40	3.7	40	84	7	181	26	27	22	23	2.00
43508603--43508695	40	2.3	40	88	3	143	27	27	20	23	1.99
43510833--43510928	31	3.1	31	90	0	156	39	30	10	19	1.85
43523790--43523985	51	3.9	50	79	5	216	30	27	17	23	1.97
43525949--43525993	23	2.0	23	91	8	74	40	20	8	31	1.83
43539702--43539777	20	3.8	20	87	6	118	48	0	28	22	1.51
43550947--43550989	22	2.0	21	86	13	61	41	18	0	39	1.51
43558439--43558466	6	4.7	6	100	0	56	50	32	0	17	1.47
43561824--43562884	4	266.5	4	88	0	1340	24	4	25	44	1.73
43574880--43574926	20	2.3	20	81	0	58	40	6	14	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43580264--43580298	16	2.2	16	89	0	52	20	14	20	45	1.85
43584451--43584500	26	1.9	26	91	0	82	16	14	12	58	1.64
43585617--43586200	45	13.1	45	84	4	734	30	17	22	29	1.97
43585532--43586200	90	7.5	90	83	4	788	30	17	22	29	1.97
43585648--43586200	223	2.5	222	84	4	722	30	17	22	28	1.97
43585615--43586109	268	1.9	265	91	1	810	29	17	23	29	1.97
43585923--43586172	132	1.9	132	92	0	419	30	17	21	30	1.96
43586839--43586874	16	2.3	16	95	4	65	19	5	0	75	1.00
43587609--43587661	3	17.7	3	90	0	79	35	1	0	62	1.06
43588015--43588063	21	2.2	21	82	7	62	40	10	4	44	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222