genome.fa.s15.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  206  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65301194--65301378	92	2.0	92	88	6	277	48	3	3	44	1.37
65304357--65304381	12	2.1	12	100	0	50	24	36	24	16	1.94
65304539--65304605	9	7.4	9	88	6	100	38	28	10	22	1.87
65312891--65312957	17	3.9	18	77	11	61	35	4	0	59	1.18
65312899--65312957	9	6.8	9	73	13	52	35	3	0	61	1.13
65312894--65312957	27	2.5	25	79	18	69	34	4	0	60	1.17
65313270--65313316	17	2.6	17	81	18	60	42	0	0	57	0.98
65313276--65313312	9	4.3	9	83	10	51	40	0	0	59	0.97
65314513--65314540	3	9.3	3	100	0	56	64	0	0	35	0.94
65319950--65319987	20	2.0	20	94	5	69	0	28	0	71	0.87
65319948--65319980	16	2.0	17	88	5	50	0	30	0	69	0.88
65320035--65320085	21	2.3	23	74	22	54	37	1	0	60	1.08
65320055--65320097	21	2.0	21	82	8	52	41	2	2	53	1.26
65320577--65320805	79	2.9	79	91	2	379	21	24	6	46	1.76
65323756--65323841	6	14.7	6	79	16	83	81	1	2	15	0.85
65323756--65323844	22	4.6	20	80	15	98	82	1	2	14	0.84
65323757--65323853	48	2.0	47	84	9	126	80	2	3	14	0.93
65323756--65323844	16	5.5	15	72	18	63	82	1	2	14	0.84
65324208--65324667	247	1.9	235	88	8	692	25	20	28	26	1.99
65325272--65325315	8	5.9	8	82	17	51	63	0	2	34	1.07
65325276--65325316	3	13.7	3	80	19	50	63	0	2	34	1.08
65336100--65336144	15	3.1	15	87	9	58	40	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65336102--65336147	22	2.0	23	83	8	58	36	4	0	58	1.18
65338645--65338679	15	2.2	16	90	5	54	40	31	0	28	1.57
65350194--65350282	25	3.6	24	83	6	97	33	23	23	19	1.97
65350213--65350344	25	5.4	24	83	3	113	33	20	26	19	1.97
65350300--65350406	25	4.3	24	73	17	69	34	19	26	19	1.96
65350489--65350536	25	1.9	25	86	0	69	33	14	27	25	1.94
65355286--65355333	22	2.2	22	82	10	64	58	0	2	39	1.10
65368448--65368494	22	2.2	21	81	11	51	55	2	0	42	1.12
65370645--65370673	13	2.3	13	94	5	51	31	10	0	58	1.31
65373596--65373674	25	3.2	25	71	10	81	35	18	25	20	1.95
65373572--65373674	50	2.1	49	85	5	136	34	19	25	20	1.96
65374494--65374537	3	14.7	3	100	0	88	0	31	0	68	0.90
65376149--65376187	19	2.2	19	86	9	55	38	2	2	56	1.27
65381236--65381409	34	5.1	34	82	0	186	32	12	13	42	1.81
65385105--65385223	60	2.0	60	94	0	211	47	10	9	31	1.70
65385129--65385224	31	3.2	30	70	5	86	45	11	10	32	1.74
65391419--65391480	32	2.0	31	84	9	81	61	1	3	33	1.22
65393070--65393861	43	18.3	43	77	6	567	26	21	21	31	1.98
65393097--65393645	175	3.2	169	82	7	584	26	21	20	31	1.98
65393188--65393861	218	3.1	218	93	1	1172	26	21	21	31	1.98
65393435--65393861	174	2.4	175	83	4	506	27	21	19	31	1.97
65394658--65394879	108	2.1	108	85	1	302	49	7	16	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65406404--65406465	32	2.0	31	84	9	81	61	1	3	33	1.22
65414501--65414527	13	2.1	13	100	0	54	59	0	0	40	0.98
65418705--65418753	24	2.0	24	88	7	73	26	12	30	30	1.92
65419051--65419106	17	3.2	16	79	20	60	26	0	3	69	1.04
65419051--65419106	8	6.5	8	78	13	58	26	0	3	69	1.04
65419058--65419110	18	3.0	17	75	20	54	28	0	5	66	1.15
65429715--65429780	11	5.9	11	80	16	57	43	1	31	22	1.62
65429715--65429779	22	2.9	22	84	11	71	43	1	32	23	1.63
65429733--65429779	11	4.2	11	88	2	67	44	2	34	19	1.62
65431582--65431666	24	3.7	23	92	4	136	45	4	25	23	1.72
65433223--65433382	83	2.0	81	88	2	239	31	5	11	51	1.60
65446454--65446512	29	2.0	29	87	6	84	59	1	5	33	1.29
65446471--65446516	15	3.1	15	78	15	51	60	0	4	34	1.16
65454515--65454541	13	2.1	13	100	0	54	59	0	0	40	0.98
65458754--65458804	25	2.0	25	96	0	93	29	11	29	29	1.92
65459110--65459169	26	2.3	26	83	11	77	30	0	3	66	1.07
65459110--65459167	9	6.5	8	76	20	53	27	0	3	68	1.05
65465854--65465919	27	2.3	30	82	10	84	40	13	13	31	1.84
65469826--65469891	11	5.9	11	80	16	57	43	1	31	22	1.62
65469826--65469890	22	2.9	22	84	11	71	43	1	32	23	1.63
65469844--65469890	11	4.2	11	88	2	67	44	2	34	19	1.62
65471748--65471832	24	3.7	23	92	4	136	45	4	25	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65473389--65473548	83	2.0	81	88	2	239	31	5	11	51	1.60
65489303--65489329	13	2.1	13	100	0	54	59	0	0	40	0.98
65493545--65493595	25	2.0	25	96	0	93	29	11	29	29	1.92
65497068--65497107	21	1.9	21	85	10	55	60	2	2	35	1.24
65500800--65500867	31	2.3	30	84	5	93	42	13	13	30	1.82
65504024--65504048	6	4.2	6	100	0	50	0	16	48	36	1.46
65504929--65504994	11	5.9	11	80	16	57	43	1	31	22	1.62
65504929--65504993	22	2.9	22	84	11	71	43	1	32	23	1.63
65504947--65504993	11	4.2	11	88	2	67	44	2	34	19	1.62
65506873--65506958	23	3.7	24	90	4	131	46	4	25	23	1.71
65508532--65508699	83	2.0	82	87	1	237	30	5	12	51	1.63
65510489--65510554	13	5.1	13	76	7	71	33	6	24	36	1.80
65511837--65511881	15	3.0	15	90	0	72	35	22	6	35	1.80
65512532--65512716	72	2.6	72	89	1	291	55	16	5	23	1.62
65519723--65519768	21	2.2	20	84	3	56	45	10	2	41	1.51
65525282--65525342	15	4.3	14	78	16	63	42	32	24	0	1.55
65525282--65525354	15	5.3	15	73	15	59	41	35	23	0	1.55
65525383--65525421	18	2.2	18	86	9	53	30	0	43	25	1.55
65525425--65525461	3	12.3	3	88	0	56	29	37	32	0	1.58
65526600--65526640	21	2.0	21	90	0	64	34	29	14	21	1.93
65543779--65543803	9	2.8	9	100	0	50	92	0	0	8	0.40
65561749--65561779	10	3.1	10	90	0	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65562420--65562456	18	2.0	20	89	10	60	32	2	27	37	1.71
65564096--65564272	46	3.8	46	91	1	275	28	24	10	36	1.89
65567225--65567264	15	2.6	16	88	11	57	82	7	0	10	0.84
65567232--65567277	17	2.8	16	81	18	51	82	6	0	10	0.83
65567240--65567294	27	2.0	27	86	6	76	81	5	1	10	0.92
65567331--65567382	22	2.4	21	87	6	68	73	1	1	23	1.04
65572477--65572521	13	3.6	13	82	11	67	60	2	0	37	1.09
65572475--65572525	24	2.1	24	100	0	102	58	3	0	37	1.16
65575453--65575501	24	2.0	24	96	0	89	32	10	4	53	1.54
65583681--65583709	14	2.0	15	93	6	51	75	10	0	13	1.04
65587667--65587721	22	2.7	21	81	15	62	74	5	3	16	1.15
65588959--65589008	24	2.2	22	89	7	73	2	18	2	78	0.95
65588975--65589010	17	2.1	17	94	0	63	0	16	2	80	0.83
65589445--65589484	14	2.9	13	89	10	62	0	7	10	82	0.84
65589445--65589502	21	2.8	20	89	7	82	0	6	10	82	0.83
65589453--65589500	14	3.4	14	88	8	62	0	6	10	83	0.81
65596286--65596326	19	2.1	20	86	4	57	68	4	7	19	1.32
65596300--65596341	20	2.1	20	82	8	50	66	4	2	26	1.23
65597124--65597192	22	3.1	23	81	8	81	43	15	21	18	1.88
65597152--65597229	25	3.2	25	89	5	108	38	17	25	17	1.92
65599580--65599621	19	2.2	19	87	8	59	71	2	0	26	0.98
65604564--65604636	23	3.3	23	68	27	75	49	31	4	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65604550--65604639	44	2.0	44	97	0	171	48	31	4	15	1.65
65614572--65614615	14	2.9	14	80	12	52	54	0	2	43	1.12
65620484--65620855	120	3.1	119	87	1	534	18	20	29	31	1.96
65634826--65634850	12	2.1	12	100	0	50	24	8	24	44	1.80
65638489--65638685	98	2.0	98	92	0	331	29	8	23	38	1.85
65640295--65640345	3	17.3	3	83	4	50	41	1	0	56	1.10
65649862--65650017	76	2.1	76	92	2	260	35	9	8	46	1.68
65653626--65653664	15	2.6	15	91	0	60	53	10	15	20	1.70
65658196--65658274	30	2.6	31	80	6	90	56	5	1	36	1.29
65659910--65659947	17	2.3	17	86	4	51	23	31	21	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222