genome.fa.s15.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  150  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48408837--48408873	18	2.2	18	85	9	51	24	0	2	72	0.97
48415015--48415079	28	2.3	28	89	0	94	16	6	16	60	1.56
48418236--48418284	5	10.0	5	82	4	64	18	4	2	75	1.06
48421693--48421811	23	5.2	22	79	8	121	15	13	26	44	1.83
48421773--48421824	23	2.2	23	83	10	61	15	23	23	38	1.92
48427681--48427717	3	12.3	3	100	0	74	32	0	0	67	0.91
48428335--48428388	16	3.4	16	94	0	90	33	0	35	31	1.58
48428367--48428476	45	2.6	43	80	12	131	34	5	28	31	1.80
48428716--48428762	16	3.0	16	78	12	53	51	2	0	46	1.13
48428600--48429135	120	4.5	121	94	1	861	49	5	2	41	1.40
48428861--48428895	18	2.0	17	88	5	52	54	0	0	45	0.99
48428887--48428916	16	1.9	15	93	6	51	50	10	0	40	1.36
48428600--48429135	239	2.2	240	91	2	857	49	5	2	41	1.40
48429117--48429284	47	3.7	46	70	18	134	48	3	3	44	1.37
48443284--48443333	19	2.6	18	78	12	55	58	4	12	26	1.51
48450629--48450702	37	2.0	37	94	0	130	20	12	28	39	1.88
48451684--48451743	28	2.2	28	82	8	70	48	5	1	45	1.34
48452014--48452051	19	2.1	18	85	9	51	2	13	2	81	0.90
48456171--48456250	29	2.8	29	98	0	151	43	17	7	31	1.77
48456313--48456390	9	8.7	9	86	0	102	44	24	6	24	1.77
48456312--48456390	18	4.4	18	90	0	113	45	24	6	24	1.76
48456433--48456476	20	2.2	20	84	8	54	25	0	6	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48458590--48458627	13	2.8	14	84	4	51	28	18	10	42	1.83
48479080--48479110	14	2.2	14	94	0	53	77	9	0	12	0.99
48479212--48479265	19	2.8	19	91	0	90	38	9	14	37	1.79
48479244--48479288	23	2.0	22	82	4	54	40	4	17	37	1.70
48479472--48479516	23	2.0	23	81	0	54	22	0	15	62	1.33
48479536--48479568	15	2.1	16	94	5	59	30	9	0	60	1.27
48484907--48484939	14	2.3	15	89	5	50	27	12	33	27	1.92
48486260--48486738	88	5.4	88	88	0	681	29	27	22	20	1.98
48486397--48486711	44	7.2	44	64	7	172	28	27	23	20	1.99
48486749--48486914	44	3.8	44	90	3	246	25	18	26	28	1.98
48486976--48487073	50	2.0	50	83	0	124	27	18	26	27	1.98
48487278--48487748	44	10.9	43	70	15	233	29	21	23	26	1.99
48487623--48487747	45	2.8	44	90	4	189	28	22	24	24	1.99
48487265--48487675	216	1.9	217	93	0	707	29	20	23	26	1.99
48487406--48487747	44	7.8	44	73	12	251	29	20	23	26	1.99
48487623--48487783	45	3.6	45	82	9	152	30	21	22	24	1.99
48488163--48488193	14	2.2	14	94	0	53	77	9	0	12	0.99
48488295--48488348	19	2.8	19	91	0	90	38	9	14	37	1.79
48488327--48488371	23	2.0	22	82	4	54	40	4	17	37	1.70
48488553--48488597	23	2.0	23	81	0	54	22	0	15	62	1.33
48488616--48488648	15	2.1	16	94	5	59	30	9	0	60	1.27
48490420--48490469	20	2.5	21	83	9	68	58	4	10	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48496977--48497015	19	2.0	20	95	5	71	5	17	0	76	0.96
48501601--48501635	17	2.0	18	88	5	54	22	5	14	57	1.59
48502354--48502484	43	3.0	43	79	12	142	24	18	27	29	1.98
48504426--48504513	43	2.2	41	80	11	101	48	5	3	42	1.43
48526417--48526457	20	2.0	20	95	0	73	14	36	4	43	1.67
48533737--48533830	48	1.9	49	85	6	129	32	17	24	25	1.96
48535762--48536087	90	3.6	90	86	0	456	51	14	7	26	1.68
48535719--48536178	180	2.6	177	78	4	530	52	14	7	25	1.66
48537397--48537442	12	3.7	12	81	18	58	23	0	6	69	1.11
48537397--48537437	14	3.1	13	86	13	57	24	0	7	68	1.15
48538746--48538791	24	1.9	24	91	8	76	36	0	2	60	1.09
48538858--48539027	59	2.9	59	97	0	313	44	8	5	41	1.58
48539038--48539079	16	2.6	16	92	0	66	42	7	2	47	1.43
48539053--48539114	23	2.7	23	82	2	72	46	1	1	50	1.20
48552321--48552354	15	2.2	16	89	5	52	32	2	0	64	1.08
48554368--48554402	18	2.0	17	94	5	61	34	2	0	62	1.10
48554351--48554415	29	2.2	30	91	8	107	35	3	0	61	1.12
48557149--48557290	71	2.0	71	91	0	230	35	18	18	28	1.94
48560296--48560333	19	2.1	19	95	5	69	39	0	5	55	1.23
48562311--48562353	21	2.0	21	90	0	68	41	0	18	39	1.51
48563060--48563121	31	2.0	31	81	6	72	46	0	11	41	1.39
48563466--48563496	11	2.9	11	95	4	55	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48563821--48563864	23	1.9	24	90	9	74	54	0	20	25	1.45
48566795--48566833	21	1.9	19	85	10	51	30	0	23	46	1.53
48568427--48568543	49	2.4	49	95	0	207	21	23	18	36	1.95
48575816--48576228	30	13.8	30	83	2	517	42	17	9	30	1.81
48577292--48577333	20	2.0	21	86	13	61	30	7	16	45	1.74
48592680--48592780	9	9.9	10	77	18	52	60	0	1	37	1.08
48592679--48592739	31	1.9	33	90	6	99	59	0	1	39	1.08
48592682--48592781	10	9.9	10	71	24	68	60	0	2	38	1.09
48592724--48592755	16	2.0	16	93	0	55	65	0	0	34	0.93
48592679--48592870	40	4.8	41	85	8	243	63	0	2	34	1.09
48592682--48592757	9	8.0	9	76	16	57	63	0	1	35	1.03
48592684--48592797	50	2.3	50	86	3	169	64	0	1	34	1.04
48599843--48599889	24	2.0	24	84	16	62	34	0	14	51	1.43
48601410--48601448	13	3.1	13	85	3	53	12	28	28	30	1.93
48606534--48606653	56	2.1	56	98	0	231	45	9	23	22	1.81
48607816--48608001	40	4.7	40	87	5	243	24	22	27	25	1.99
48607816--48608024	80	2.6	79	82	8	210	25	21	27	26	1.99
48627161--48627201	21	2.0	21	85	0	55	31	4	4	58	1.40
48632403--48632449	21	2.2	21	92	0	76	36	23	14	25	1.93
48638699--48638728	16	1.9	16	93	6	53	50	20	0	30	1.49
48639176--48639218	20	2.2	19	87	4	59	20	16	4	58	1.56
48643906--48643941	11	3.4	11	88	3	56	69	11	8	11	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48643897--48643941	21	2.0	22	87	8	65	66	11	11	11	1.45
48647083--48647161	37	2.1	37	90	0	122	25	31	18	24	1.98
48647280--48648038	47	16.0	47	95	1	1250	28	29	9	32	1.88
48651440--48651705	40	6.7	40	89	1	399	26	28	21	23	1.99
48652919--48652997	37	2.1	37	90	0	122	25	31	18	24	1.98
48653116--48653962	47	18.0	47	95	0	1446	27	30	9	31	1.89
48658587--48658771	57	3.3	57	85	1	219	30	11	15	42	1.82
48658580--48658834	56	4.5	57	79	5	250	30	11	14	42	1.81
48658580--48658831	113	2.2	114	83	2	303	31	11	14	42	1.81
48658580--48658867	56	5.1	56	79	2	213	30	12	15	42	1.83
48659522--48659751	113	2.0	113	97	0	433	35	12	14	37	1.84
48661491--48661694	102	2.0	102	100	0	408	24	24	16	34	1.95
48669812--48669843	17	1.9	17	93	6	57	0	6	6	87	0.67
48672643--48672692	25	2.0	26	88	4	75	64	12	12	12	1.51
48676688--48676746	29	2.0	29	100	0	118	37	15	13	33	1.86
48686002--48686035	16	2.1	16	100	0	68	64	5	11	17	1.45
48687086--48687141	26	2.0	29	86	10	82	51	0	1	46	1.11
48689955--48690117	43	3.8	43	85	6	222	28	32	15	23	1.95
48690388--48690482	43	2.2	43	90	0	145	45	9	11	33	1.73
48694719--48694772	27	2.0	27	100	0	108	22	18	3	55	1.58
48695374--48695405	7	4.6	7	92	0	55	34	53	0	12	1.39
48695462--48695501	7	5.9	7	88	2	55	30	52	2	15	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48695888--48695933	20	2.4	20	82	7	51	63	4	4	28	1.33
48695940--48696050	41	2.7	41	91	0	177	31	28	22	17	1.96
48701187--48701229	16	2.6	16	81	7	50	55	2	2	39	1.25
48701908--48702006	52	2.1	46	85	14	130	50	5	8	36	1.54
48702833--48703086	124	2.0	124	99	0	499	36	9	14	38	1.79
48716742--48716797	29	1.9	29	82	7	69	19	10	16	53	1.71
48750919--48750956	20	1.9	20	94	0	67	23	7	0	68	1.16
48754035--48754382	47	7.4	47	93	1	516	28	31	8	32	1.86
48754132--48754210	25	3.3	25	66	16	76	31	29	5	34	1.79
48754035--48754382	143	2.5	141	90	0	534	28	31	8	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222