genome.fa.s15.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  141  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45719707--45719761	22	2.4	23	80	11	60	61	3	23	10	1.44
45723115--45723174	30	2.0	30	96	0	111	30	11	26	31	1.92
45727601--45728185	40	14.6	40	95	1	994	23	27	20	28	1.99
45736490--45736597	53	2.0	53	87	3	155	35	28	12	24	1.91
45743445--45744339	130	6.9	130	89	1	1337	27	21	21	30	1.98
45753368--45753429	25	2.5	25	89	0	88	27	29	16	27	1.97
45760790--45760900	50	2.2	50	80	0	123	21	27	18	31	1.97
45760864--45760919	25	2.2	25	90	6	87	19	28	21	30	1.98
45770390--45770466	23	3.3	24	80	5	77	57	3	3	35	1.36
45770401--45770481	24	3.5	24	77	11	71	55	3	4	35	1.39
45772230--45772414	40	4.7	40	82	7	209	24	22	27	25	2.00
45772230--45772414	79	2.3	81	83	7	227	24	22	27	25	2.00
45772283--45772437	79	2.0	79	84	7	208	25	21	27	25	1.99
45780126--45780257	40	3.3	40	92	3	196	25	21	28	25	1.99
45780126--45780290	79	2.1	79	83	6	201	26	20	27	25	1.99
45782881--45783937	44	23.8	43	72	10	490	28	23	18	30	1.98
45783054--45783837	178	4.4	178	82	4	883	26	23	18	30	1.98
45783240--45783937	222	3.1	221	83	5	815	27	22	18	30	1.98
45783035--45783809	355	2.2	352	83	4	1002	27	23	18	30	1.98
45784195--45784241	24	2.0	24	91	0	76	27	25	12	34	1.92
45790728--45790778	24	2.1	25	85	3	68	47	3	5	43	1.46
45790905--45790956	23	2.4	21	79	14	61	59	5	3	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45790905--45790999	24	4.2	23	77	9	81	56	5	5	32	1.44
45800894--45800934	5	8.4	5	94	5	75	19	0	0	80	0.71
45801071--45801104	15	2.3	15	90	10	52	23	0	5	70	1.09
45801327--45801591	107	2.5	108	94	1	453	34	14	16	33	1.90
45803103--45803140	13	2.9	13	96	0	67	31	26	15	26	1.96
45810851--45811439	128	4.5	128	81	8	448	30	21	23	24	1.99
45810923--45811519	44	13.7	44	65	13	164	29	21	24	24	1.99
45811093--45811541	132	3.4	132	89	4	658	28	20	25	25	1.99
45813894--45813927	15	2.3	15	90	10	52	23	0	5	70	1.09
45814148--45814589	107	4.1	107	88	4	647	32	16	16	34	1.92
45814148--45814589	220	2.0	213	88	4	645	32	16	16	34	1.92
45815571--45815715	21	7.0	21	69	0	94	43	20	23	13	1.86
45815552--45815735	42	4.4	42	84	2	219	41	18	24	15	1.89
45815822--45815869	24	2.0	24	91	0	78	20	29	10	39	1.86
45822478--45822523	21	2.2	21	84	0	56	56	4	15	23	1.57
45831537--45831566	15	1.9	16	93	6	53	80	0	13	6	0.91
45832875--45832944	3	24.3	3	80	8	65	1	31	1	65	1.10
45832875--45832944	17	4.2	17	78	7	72	1	31	1	65	1.10
45832889--45832952	26	2.6	24	85	7	85	3	23	1	71	1.08
45833043--45834014	324	3.0	324	97	1	1817	40	7	13	37	1.74
45838317--45838402	42	2.0	42	90	0	136	50	2	24	23	1.61
45838332--45838403	18	3.7	18	70	25	65	51	0	26	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45838907--45838951	23	1.9	22	86	13	63	22	11	28	37	1.88
45842893--45843010	57	2.1	57	98	0	227	27	20	12	39	1.89
45845317--45845485	45	3.8	45	83	4	198	38	18	17	25	1.92
45845316--45845485	90	1.9	90	85	2	234	38	18	18	25	1.93
45845319--45845507	90	2.1	90	80	3	211	40	17	16	25	1.90
45845496--45845664	45	3.7	45	81	1	194	46	15	21	16	1.83
45848180--45848387	75	2.8	75	94	0	380	29	26	22	21	1.99
45848290--45848489	102	2.0	102	91	2	330	31	26	21	20	1.98
45855712--45855830	33	3.3	33	68	21	96	30	26	21	21	1.99
45855889--45856039	33	4.5	33	71	22	116	33	29	19	17	1.95
45855841--45856042	102	2.0	102	92	0	332	31	27	20	19	1.97
45857697--45857733	15	2.5	15	90	0	56	8	8	32	51	1.61
45858880--45858925	24	1.9	24	95	0	83	28	17	23	30	1.97
45858879--45858932	24	2.2	24	86	0	81	35	14	22	27	1.93
45859903--45859964	29	2.1	29	82	5	72	20	8	12	58	1.60
45860501--45860538	20	1.9	20	88	0	58	10	2	15	71	1.25
45862120--45862190	37	1.9	37	100	0	142	21	14	21	43	1.87
45866292--45866331	20	2.0	20	90	0	62	45	0	5	50	1.23
45872024--45872078	21	2.7	20	80	5	56	32	12	23	30	1.92
45872956--45873007	16	3.2	16	94	0	86	28	0	36	34	1.58
45872988--45873097	45	2.6	43	80	9	129	33	5	29	31	1.80
45873243--45873277	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45873130--45873446	157	2.0	157	95	0	571	45	3	5	46	1.41
45873378--45873675	120	2.5	121	92	3	485	50	4	3	42	1.38
45873499--45873550	15	3.6	15	80	12	56	53	1	0	44	1.11
45873618--45873898	91	3.0	93	81	10	286	48	3	3	44	1.36
45878599--45878661	23	2.7	23	76	16	67	53	22	6	17	1.65
45880001--45880030	5	5.8	5	96	4	51	80	0	20	0	0.72
45894257--45894317	25	2.4	25	81	5	70	31	24	22	21	1.98
45897666--45897698	17	1.9	17	88	11	50	75	6	0	18	1.00
45906327--45906909	70	8.3	70	78	2	445	26	18	25	29	1.98
45906308--45906911	140	4.3	139	77	3	514	27	17	25	29	1.98
45906308--45906914	210	2.9	209	76	2	615	27	17	25	29	1.98
45907249--45907278	13	2.3	13	94	0	51	26	20	26	26	1.99
45908121--45908287	40	4.2	40	86	2	187	37	18	26	17	1.93
45910447--45910556	51	2.2	51	94	0	193	34	26	10	28	1.90
45910681--45910794	33	3.5	32	77	4	102	28	43	0	28	1.55
45911403--45911613	117	1.8	117	89	0	332	42	23	10	23	1.85
45911800--45911836	16	2.3	16	90	0	56	35	2	21	40	1.68
45916509--45916668	67	2.4	67	87	2	223	24	25	16	33	1.95
45917424--45917475	13	4.1	13	82	5	70	32	7	25	34	1.84
45924822--45924999	40	4.4	40	77	10	175	23	15	28	32	1.95
45924822--45924996	41	4.3	41	76	8	153	23	14	28	33	1.94
45924822--45924978	81	1.9	80	82	7	192	23	15	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45928606--45928659	26	2.1	25	86	10	74	46	0	0	53	1.00
45928615--45928690	30	2.5	30	87	6	100	48	2	0	48	1.15
45940717--45941012	97	2.9	100	79	8	332	43	1	13	41	1.52
45940860--45940906	22	2.2	21	85	11	60	48	0	2	48	1.13
45940808--45941020	106	2.0	105	81	4	250	41	0	13	44	1.49
45942488--45942565	26	2.9	26	73	17	70	53	0	2	43	1.14
45943962--45944003	20	2.1	20	86	0	57	47	0	7	45	1.30
45949976--45950014	11	3.5	11	82	0	51	35	7	0	56	1.28
45956087--45956132	23	2.0	23	86	0	65	13	10	28	47	1.76
45973800--45973834	18	1.9	18	94	0	61	20	5	20	54	1.64
45984941--45984973	17	1.9	18	88	11	52	42	9	0	48	1.35
45988667--45988728	22	2.8	22	87	4	81	46	6	6	40	1.55
45988889--45988917	14	2.0	15	93	6	51	31	0	0	68	0.89
45994188--45995917	248	7.0	247	95	0	2962	38	15	10	35	1.82
45994188--45995917	495	3.5	494	94	1	3018	38	15	10	35	1.82
45996622--45996674	20	2.5	20	81	6	61	22	22	22	32	1.98
45998858--45998896	20	1.9	21	89	5	62	28	15	7	48	1.72
46000355--46000437	41	2.0	41	97	0	157	48	13	12	26	1.77
46005945--46005982	17	2.2	17	95	0	67	57	13	0	28	1.36
46006627--46006697	36	2.0	36	88	0	106	43	12	14	29	1.82
46006943--46006989	24	2.0	24	82	0	58	17	29	8	44	1.78
46007556--46007618	20	3.2	20	65	17	60	49	7	19	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46016867--46016998	17	7.8	17	69	16	62	15	20	32	31	1.93
46017011--46017096	17	4.7	17	78	16	91	12	24	31	31	1.93
46017031--46017074	22	2.0	22	95	0	79	11	22	31	34	1.90
46019573--46019599	13	2.1	13	100	0	54	14	14	7	62	1.51
46019957--46020009	26	2.0	26	85	7	72	49	0	3	47	1.19
46028561--46028725	40	4.1	40	82	6	192	24	23	26	26	2.00
46028555--46028718	80	2.0	80	84	4	215	28	20	24	26	1.99
46028701--46028981	142	2.0	139	90	3	447	28	20	22	28	1.98
46028910--46029013	40	2.6	40	86	4	138	26	19	24	29	1.98
46029319--46029379	7	8.6	7	83	3	59	21	0	29	49	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222