genome.fa.s15.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  202  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64160306--64160432	43	3.0	43	85	2	175	41	22	14	22	1.89
64163509--64163732	43	5.2	43	85	3	281	30	33	16	19	1.94
64167602--64167642	21	2.0	21	90	4	66	39	39	0	21	1.54
64167905--64167944	21	2.0	21	90	5	64	52	27	0	20	1.46
64167912--64168016	14	7.4	14	72	13	63	46	31	1	20	1.61
64167983--64168020	7	5.4	7	90	0	58	55	23	2	18	1.55
64167953--64168035	21	3.9	21	73	7	78	44	32	2	20	1.64
64167905--64168050	78	1.9	78	83	8	190	46	31	1	20	1.59
64168263--64168338	40	1.9	40	86	0	107	35	22	19	22	1.96
64168254--64168465	41	5.2	41	78	5	205	31	29	19	19	1.96
64168303--64168465	82	2.0	82	87	2	238	29	32	20	17	1.95
64168526--64168635	40	2.8	40	85	1	150	21	24	19	34	1.96
64170303--64170361	27	2.1	29	84	9	77	54	3	3	38	1.34
64175593--64175735	41	3.4	41	79	11	141	38	2	0	58	1.18
64175601--64175713	51	2.2	51	92	4	183	38	2	0	57	1.19
64175601--64175713	11	10.9	11	69	20	66	38	2	0	57	1.19
64175702--64175742	22	1.9	22	90	5	66	39	2	0	58	1.11
64175635--64175741	51	2.1	50	81	6	117	37	1	0	59	1.14
64176157--64176201	18	2.6	18	89	3	65	86	4	6	2	0.76
64176327--64176404	18	4.5	17	78	15	72	66	0	33	0	0.92
64176329--64176400	10	6.6	10	73	17	54	68	0	31	0	0.90
64176329--64176411	24	3.6	23	73	12	71	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64176332--64176405	14	5.1	13	71	25	51	68	0	31	0	0.89
64176332--64176411	34	2.8	28	75	24	85	67	0	32	0	0.91
64176349--64176411	10	6.5	10	75	14	60	66	0	33	0	0.92
64176363--64176411	18	2.6	19	75	18	57	65	0	34	0	0.93
64176422--64176474	18	3.0	17	78	10	54	73	0	24	1	0.93
64176384--64176475	43	2.1	43	83	0	112	67	0	31	1	0.98
64177185--64177236	19	2.7	19	90	0	77	25	0	5	69	1.10
64177276--64177342	28	2.5	27	92	4	109	43	10	0	46	1.38
64177342--64177372	16	1.9	16	93	0	53	87	3	3	6	0.75
64183171--64183237	27	2.5	27	97	0	125	13	31	29	25	1.94
64188328--64188379	26	2.0	26	85	7	70	44	3	0	51	1.19
64204917--64204954	6	6.8	6	88	11	55	86	0	0	13	0.56
64204917--64204954	10	3.4	12	82	17	55	86	0	0	13	0.56
64204964--64205061	1	98.0	1	97	0	187	0	0	1	98	0.08
64205436--64205632	98	2.0	98	97	0	376	37	24	10	28	1.88
64207670--64207753	40	2.1	41	88	6	127	26	21	22	29	1.99
64208209--64208247	20	2.0	19	85	5	51	5	7	2	84	0.84
64208390--64208602	19	11.2	19	71	12	109	7	4	7	80	1.00
64208390--64208610	13	16.3	13	69	15	103	7	4	7	80	0.99
64208481--64208585	55	1.9	56	82	9	135	5	3	8	81	0.96
64208505--64208609	27	4.2	25	77	14	83	5	2	8	82	0.91
64208390--64208609	46	4.9	43	73	15	144	7	4	7	80	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64208395--64208607	93	2.3	91	79	17	221	7	4	7	80	1.00
64208416--64208611	87	2.2	89	79	14	219	7	5	7	80	1.01
64208567--64208632	25	2.7	25	81	6	73	10	3	6	80	1.00
64208390--64208610	1	221.0	1	63	0	64	7	4	7	80	0.99
64217883--64218090	100	2.1	101	99	0	409	37	21	9	31	1.86
64219602--64219631	15	2.0	15	93	0	51	80	3	0	16	0.85
64222000--64222164	82	2.0	82	96	0	303	30	10	14	44	1.78
64223053--64223127	37	2.0	38	82	7	91	20	16	22	41	1.90
64223069--64223193	37	3.3	38	76	3	128	19	14	21	44	1.86
64223964--64224038	28	2.7	28	82	10	82	50	4	4	41	1.40
64225606--64225641	17	2.1	17	94	0	63	58	0	0	41	0.98
64225785--64225826	23	1.9	23	85	9	61	57	0	0	42	0.99
64230348--64230603	107	2.4	107	80	8	297	28	17	14	40	1.88
64230348--64230840	54	9.2	54	77	3	395	28	17	14	39	1.88
64231278--64231315	17	2.4	16	82	8	51	65	0	13	21	1.26
64231824--64231857	5	6.6	5	86	6	50	38	2	20	38	1.68
64239069--64239132	25	2.6	25	84	0	83	23	29	17	29	1.97
64250848--64250915	31	2.2	31	84	5	84	41	7	16	35	1.76
64251452--64251495	21	2.1	21	82	0	52	31	11	9	47	1.71
64272519--64272564	3	15.3	3	100	0	92	67	0	32	0	0.91
64278316--64278367	19	2.8	17	75	16	50	19	1	1	76	0.97
64278615--64278677	24	2.7	23	90	2	99	26	12	17	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64279196--64279260	17	3.7	17	78	19	62	56	3	3	36	1.30
64279199--64279261	26	2.4	26	84	7	74	57	1	3	38	1.24
64279198--64279262	9	7.3	9	77	11	64	55	1	3	40	1.25
64280914--64281015	21	4.9	21	69	10	57	16	22	17	43	1.88
64280882--64281015	42	3.2	42	81	6	146	17	23	17	41	1.90
64284749--64284795	20	2.3	20	78	7	51	48	2	10	38	1.50
64285323--64285462	74	1.9	74	82	5	176	18	24	18	38	1.93
64285333--64285498	49	3.4	48	73	9	113	18	25	19	36	1.94
64285299--64285551	25	10.2	24	71	8	109	20	25	19	35	1.96
64288873--64289011	62	2.2	62	79	6	156	19	32	23	25	1.97
64289920--64289945	13	2.0	13	100	0	52	53	30	15	0	1.42
64294235--64294494	30	8.7	30	85	6	316	31	7	17	43	1.77
64294264--64294309	24	1.9	24	90	0	74	34	8	10	45	1.70
64303057--64303191	42	3.2	43	78	16	122	31	26	17	25	1.97
64303078--64303200	44	2.8	42	78	11	117	31	25	17	25	1.97
64304353--64304381	14	2.0	15	93	6	51	51	20	0	27	1.47
64305066--64305358	30	9.4	30	84	6	316	33	7	16	42	1.75
64305523--64305599	41	1.9	40	86	7	111	28	18	25	27	1.98
64311227--64311367	24	5.7	24	69	15	81	33	19	25	21	1.97
64311413--64311479	25	2.8	24	80	8	73	34	16	23	25	1.95
64315850--64316088	126	1.9	126	96	0	442	39	14	7	37	1.76
64320145--64320216	22	3.1	22	73	11	63	63	13	9	12	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64321281--64321313	3	11.0	3	100	0	66	66	0	33	0	0.92
64322996--64323081	42	2.0	42	93	4	147	41	13	16	27	1.86
64326433--64326680	28	8.9	28	90	2	356	27	22	23	25	2.00
64326670--64326704	12	2.9	12	100	0	70	48	25	8	17	1.75
64326801--64326864	26	2.5	26	89	0	101	37	20	18	23	1.94
64327020--64327222	27	7.6	27	82	8	220	18	16	21	43	1.88
64327020--64327222	53	3.8	53	82	7	216	18	16	21	43	1.88
64327019--64327221	80	2.5	81	83	7	245	18	16	20	43	1.88
64332907--64332963	20	2.6	22	75	13	64	43	0	0	56	0.99
64332920--64332960	20	2.0	22	90	9	68	46	0	0	53	1.00
64332911--64332967	30	2.0	28	89	6	87	45	0	0	54	0.99
64334199--64334348	45	3.4	44	81	9	171	20	16	18	44	1.87
64340332--64340388	20	2.6	22	75	13	64	43	0	0	56	0.99
64340345--64340385	20	2.0	22	90	9	68	46	0	0	53	1.00
64340336--64340392	30	2.0	28	89	6	87	45	0	0	54	0.99
64341631--64341775	45	3.2	45	93	1	247	19	17	20	42	1.89
64349997--64350022	12	2.2	12	100	0	52	15	0	7	76	0.99
64350729--64351013	50	5.6	50	80	2	230	27	21	27	23	1.99
64350777--64351021	100	2.5	99	79	3	269	27	22	27	22	1.99
64351205--64351243	20	2.0	20	90	10	62	56	5	23	15	1.59
64355383--64355496	56	2.0	57	96	1	212	27	11	24	36	1.90
64358194--64358317	50	2.5	50	83	0	158	27	24	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64358579--64358617	20	2.0	20	90	10	62	56	5	23	15	1.59
64374254--64374501	50	4.9	50	81	6	259	20	29	22	27	1.99
64374253--64374500	99	2.4	104	86	6	346	21	29	22	26	1.99
64374595--64374626	13	2.5	13	94	0	55	56	12	0	31	1.37
64375568--64375593	13	2.0	13	100	0	52	46	15	7	30	1.74
64381841--64382089	50	4.8	50	84	4	275	20	29	23	26	1.99
64381840--64382089	100	2.4	104	87	6	348	21	29	23	26	1.99
64382184--64382215	13	2.5	13	94	0	55	56	12	0	31	1.37
64382427--64382484	30	1.9	30	89	0	89	31	24	3	41	1.71
64383160--64383185	13	2.0	13	100	0	52	46	15	7	30	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222