Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  208  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65965189--65965228
20
2.0
20
85
9
55
50
2
0
47
1.14
65965440--65965484
3
15.0
3
100
0
90
66
0
0
33
0.92
65970005--65970057
13
4.1
13
77
18
65
37
24
5
32
1.79
65970494--65970533
11
3.6
11
82
0
53
20
10
10
60
1.57
65976691--65976776
33
2.6
33
100
0
172
12
20
27
38
1.90
65976800--65976934
33
3.7
34
70
26
107
23
20
25
29
1.99
65976724--65976932
76
2.7
77
91
0
330
22
20
25
31
1.98
65978944--65978983
20
2.0
20
100
0
80
35
25
5
35
1.78
65979528--65979557
16
1.9
16
93
6
53
30
0
3
66
1.07
65979960--65980004
23
2.0
23
81
0
54
17
8
6
66
1.40
65980534--65980586
18
2.9
19
81
10
58
33
5
1
58
1.32
65996242--65996320
31
2.6
30
80
9
72
36
1
11
50
1.46
66002626--66002665
21
1.9
21
89
0
62
50
10
12
27
1.72
66013141--66013190
6
8.3
6
77
16
50
14
2
4
80
0.95
66013139--66013206
17
3.8
17
74
20
59
14
2
7
75
1.14
66013577--66013610
17
2.0
17
88
0
50
17
2
14
64
1.40
66019598--66019636
19
2.0
20
85
9
55
43
10
12
33
1.77
66019623--66019665
22
2.0
22
85
0
59
39
16
4
39
1.69
66021396--66021429
17
2.1
16
88
5
50
41
0
2
55
1.15
66021831--66021905
37
2.0
37
100
0
150
44
10
8
37
1.69
66024898--66025009
20
5.5
20
72
8
100
24
8
8
58
1.57
66025677--66026077
20
20.9
20
68
12
128
54
10
14
20
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66025926--66025977
21
2.5
21
84
9
63
59
3
11
25
1.49
66025923--66026069
39
3.7
38
72
8
107
56
8
14
20
1.64
66026405--66026447
20
2.2
20
86
0
59
55
0
20
23
1.43
66027507--66027567
11
6.4
9
80
10
52
31
0
0
68
0.89
66027480--66027558
30
2.7
28
83
13
81
32
1
0
65
1.00
66027525--66027563
11
3.5
11
100
0
78
35
0
0
64
0.94
66027536--66027597
28
2.1
29
91
5
99
35
1
0
62
1.05
66027525--66027590
11
6.4
11
78
18
61
36
1
0
62
1.05
66027546--66027622
31
2.6
31
83
6
88
33
1
1
63
1.11
66029271--66029465
98
2.0
98
95
0
354
36
24
10
28
1.89
66030137--66030186
26
2.0
26
88
4
75
56
4
8
32
1.47
66030912--66031003
19
4.9
19
84
10
120
38
16
7
38
1.77
66030938--66031000
21
3.1
21
88
9
103
39
14
7
38
1.75
66032711--66032892
75
2.4
76
84
3
210
29
23
24
23
1.99
66034266--66034295
15
2.1
14
93
6
51
43
0
3
53
1.17
66034852--66034948
37
2.6
37
83
4
115
41
27
16
14
1.87
66034933--66034989
20
2.8
20
86
2
78
43
17
22
15
1.87
66048111--66048149
21
1.9
21
89
5
62
41
2
15
41
1.61
66054650--66054718
21
3.3
21
97
0
129
33
33
10
23
1.88
66055507--66055552
9
5.2
9
94
2
76
21
10
23
43
1.84
66055713--66055737
12
2.1
12
100
0
50
16
24
36
24
1.94
66057664--66057708
21
2.2
21
92
4
74
51
17
6
24
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66059735--66059878
68
2.1
70
80
6
159
45
8
6
38
1.61
66060096--66060135
14
2.7
15
81
18
57
62
5
0
32
1.17
66061039--66061076
19
2.0
19
100
0
76
52
10
31
5
1.58
66063206--66063246
19
2.1
20
86
4
57
56
2
9
31
1.45
66069789--66069829
19
2.1
20
86
4
57
56
2
9
31
1.45
66074918--66074964
21
2.2
22
92
3
78
21
19
38
21
1.94
66078978--66079011
17
1.9
18
94
5
61
58
14
14
11
1.63
66078987--66079046
31
1.9
31
93
0
102
56
21
10
11
1.64
66083795--66083830
4
9.0
4
100
0
72
25
0
50
25
1.50
66083827--66083868
10
3.9
11
81
15
52
7
4
45
42
1.52
66088399--66088427
9
3.3
9
90
9
51
82
0
17
0
0.66
66092908--66092968
28
2.2
28
100
0
122
62
9
0
27
1.27
66094072--66094116
22
1.9
24
86
13
67
40
0
6
53
1.27
66094127--66094160
18
1.9
17
88
5
50
50
0
0
50
1.00
66096221--66096245
12
2.1
12
100
0
50
24
36
24
16
1.94
66096406--66096484
9
8.8
9
97
0
131
37
29
10
22
1.87
66097522--66097747
51
4.4
51
78
5
224
26
17
26
30
1.97
66106696--66106747
20
2.6
20
78
6
61
38
9
5
46
1.61
66109875--66109954
25
3.1
24
76
13
70
30
25
26
18
1.98
66109975--66110029
24
2.2
25
87
3
76
36
21
21
20
1.95
66109967--66110029
24
2.6
24
82
5
74
39
20
20
19
1.92
66110022--66110097
25
3.1
25
74
14
77
30
19
30
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66109975--66110090
25
4.8
23
74
9
72
33
20
25
20
1.97
66111047--66111142
43
2.2
43
90
0
147
22
21
23
31
1.99
66111134--66111321
43
4.3
42
75
5
169
26
28
20
25
1.99
66111151--66111321
88
2.0
86
81
6
202
27
28
20
23
1.99
66117175--66117659
16
27.9
16
66
16
143
35
3
16
44
1.64
66117173--66117259
25
3.5
25
78
12
97
34
3
18
43
1.67
66117215--66117712
135
3.7
135
91
7
834
36
4
16
43
1.66
66117335--66117394
25
2.4
25
91
0
93
35
1
18
45
1.60
66117332--66117641
126
2.4
126
94
3
534
35
3
16
45
1.63
66117526--66117712
34
5.2
35
71
16
116
36
2
16
44
1.61
66117588--66117664
25
3.0
25
82
12
86
33
1
18
46
1.57
66117200--66117712
261
1.9
267
94
4
914
36
3
15
44
1.66
66117753--66117828
19
4.5
19
72
27
82
36
0
14
48
1.44
66117462--66117799
144
2.4
142
85
9
440
35
3
15
44
1.65
66117762--66117843
28
3.2
28
71
28
101
36
0
14
48
1.44
66117753--66117843
47
1.9
47
100
0
182
36
0
14
49
1.43
66117955--66118123
21
7.4
21
66
24
76
49
4
4
42
1.43
66117936--66118192
69
3.7
69
94
2
428
47
5
5
41
1.48
66119531--66119570
12
3.3
12
83
13
55
57
12
7
22
1.60
66119520--66119581
24
2.7
24
73
14
67
53
14
8
24
1.68
66119619--66119644
12
2.2
12
100
0
52
57
11
7
23
1.59
66120042--66120099
22
2.5
24
84
13
77
22
0
43
34
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66120411--66120445
16
2.1
17
89
5
54
31
5
2
60
1.35
66120920--66120964
15
3.0
15
87
6
65
35
40
2
22
1.66
66122049--66122329
41
6.8
41
65
16
132
36
29
16
17
1.92
66136252--66136327
19
3.9
19
70
21
59
31
2
1
64
1.15
66138487--66138541
28
2.0
28
82
7
67
23
12
9
54
1.66
66146333--66146598
103
2.6
104
91
0
426
19
20
30
29
1.97
66159117--66159709
44
13.7
43
72
11
331
27
19
24
28
1.99
66159157--66159750
89
6.8
89
67
13
313
28
19
24
27
1.99
66159062--66159840
217
3.6
217
92
0
1272
28
19
23
28
1.98
66160183--66160214
5
6.4
5
96
0
55
65
15
0
18
1.27
66161115--66161165
20
2.5
20
84
6
59
23
1
1
72
1.05
66162612--66162710
33
3.0
32
82
5
117
20
23
28
28
1.99
66164880--66164926
3
14.7
3
84
8
58
63
2
2
31
1.18
66168478--66168527
23
2.2
22
82
10
57
68
6
4
22
1.29
66169406--66169521
43
2.7
42
82
16
148
21
19
31
27
1.98
66170320--66170365
23
2.0
23
83
8
58
39
6
17
36
1.76
66174660--66174722
24
2.8
22
75
24
69
39
20
1
38
1.62
66174660--66174703
12
3.7
12
87
6
63
40
18
2
38
1.63
66186024--66186058
15
2.3
15
90
0
52
8
14
20
57
1.63
66197928--66197982
26
2.4
22
76
23
67
5
30
3
60
1.37
66197936--66197989
26
2.1
26
100
0
108
7
25
3
62
1.38
66198767--66199099
165
2.0
166
89
3
510
26
20
22
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66202658--66202866
51
4.1
51
91
2
321
28
24
16
31
1.96
66203457--66203522
27
2.5
27
92
4
100
30
21
12
36
1.90
66203467--66203522
27
2.1
27
100
0
112
28
19
14
37
1.91
66203467--66203535
27
2.7
26
86
8
63
30
20
13
36
1.90
66207865--66207889
13
1.9
13
100
0
50
32
4
8
56
1.47
66207989--66208237
50
4.8
50
85
5
266
26
23
28
21
1.99
66207989--66208238
100
2.4
103
82
6
301
26
23
28
21
1.99
66211159--66211202
23
2.0
22
86
4
61
54
4
0
40
1.21
66211477--66211530
25
2.0
28
82
10
69
35
0
0
64
0.94
66214140--66214185
16
2.7
18
77
16
53
43
0
4
52
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222