genome.fa.s15.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  192  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61354453--61354676	115	1.9	115	99	0	439	30	8	28	32	1.88
61354705--61354743	14	2.7	14	88	4	51	28	2	43	25	1.68
61359231--61359430	41	4.9	41	86	1	222	23	27	19	30	1.98
61359266--61359427	41	4.0	41	90	1	236	22	29	19	28	1.98
61361075--61361099	13	1.9	13	100	0	50	68	24	0	8	1.16
61364787--61364891	43	2.5	44	77	14	112	23	20	26	29	1.99
61379157--61379233	17	4.8	17	73	17	51	58	2	7	31	1.40
61382912--61382946	17	2.1	17	88	0	52	51	0	14	34	1.42
61385631--61385678	19	2.5	19	74	12	53	31	8	0	60	1.26
61385665--61385715	26	2.0	25	85	14	68	45	9	0	45	1.36
61385877--61385958	37	2.3	36	82	4	103	35	9	4	50	1.57
61387538--61387567	14	2.1	14	100	0	60	30	13	20	36	1.90
61387668--61387729	27	2.3	27	97	0	115	38	9	0	51	1.35
61387781--61387832	27	1.9	27	92	0	86	30	21	32	15	1.94
61388168--61388219	18	2.8	19	73	5	61	48	0	15	36	1.45
61388161--61388219	19	3.2	19	73	4	66	45	0	13	40	1.43
61388769--61388820	27	1.9	27	88	0	77	15	32	19	32	1.93
61388875--61388935	26	2.4	26	91	2	106	57	0	1	40	1.08
61399179--61399226	24	2.0	24	95	0	87	37	12	18	31	1.88
61400183--61400220	20	2.1	19	85	14	53	55	2	15	26	1.54
61408173--61408221	18	2.6	19	84	9	57	73	0	6	20	1.04
61416119--61416160	22	1.9	22	85	9	59	7	7	7	78	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61422684--61422723	19	2.0	21	86	13	59	60	0	2	37	1.11
61426386--61426450	16	4.1	16	89	0	103	26	30	4	38	1.76
61429969--61430003	17	2.1	17	88	0	52	54	0	8	37	1.31
61442756--61442860	52	2.0	52	100	0	210	32	11	17	39	1.85
61446536--61446560	8	3.1	8	100	0	50	24	12	0	64	1.27
61451419--61451456	15	2.5	16	87	8	53	44	0	0	55	0.99
61451432--61451460	8	3.8	8	90	9	51	44	0	0	55	0.99
61456064--61456124	20	3.1	20	79	11	56	47	6	0	45	1.28
61469929--61469981	19	2.8	18	75	11	52	58	1	0	39	1.09
61480060--61480248	59	3.2	58	72	11	193	41	1	2	54	1.24
61480252--61480286	18	2.0	17	88	5	52	40	2	2	54	1.30
61491988--61492026	12	3.2	12	85	0	51	53	10	0	35	1.35
61492904--61492935	4	8.0	4	100	0	64	50	0	0	50	1.00
61495739--61495777	18	2.2	17	86	13	53	33	0	20	46	1.51
61496005--61496054	23	2.2	23	92	0	82	22	20	26	32	1.98
61498062--61498374	67	4.8	67	84	7	430	37	1	18	42	1.62
61498568--61498659	45	2.0	45	81	4	105	25	25	14	35	1.93
61498829--61498886	20	2.9	20	84	0	71	34	5	17	43	1.71
61498828--61498899	20	3.6	20	77	5	65	34	5	18	41	1.73
61510125--61510193	30	2.3	31	82	7	79	21	8	20	49	1.76
61511938--61511962	9	2.8	9	100	0	50	32	12	20	36	1.89
61516853--61516976	23	5.4	23	72	8	85	41	33	4	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61516881--61516946	25	2.8	23	77	8	69	46	27	4	21	1.70
61518706--61518912	103	2.0	102	93	0	351	36	13	19	30	1.90
61532983--61533088	41	2.6	41	90	0	167	23	21	24	30	1.99
61535561--61535668	15	7.2	15	65	12	69	45	7	21	25	1.78
61535557--61535677	30	4.0	30	92	2	181	45	6	22	25	1.76
61540254--61540361	15	7.2	15	65	12	69	45	7	21	25	1.78
61540248--61540371	30	4.1	30	91	1	194	44	6	23	25	1.77
61542315--61542410	29	3.4	28	75	11	81	62	0	2	35	1.07
61542380--61542413	10	3.5	10	88	8	52	76	0	0	23	0.79
61543601--61543801	63	3.2	63	80	6	178	25	29	22	22	1.99
61545207--61545263	27	2.2	26	87	9	80	28	3	1	66	1.18
61545204--61545268	27	2.3	28	78	5	78	26	4	1	67	1.18
61548085--61548113	13	2.3	13	94	5	51	13	10	6	68	1.37
61549950--61550101	27	5.6	27	88	0	169	26	23	25	24	2.00
61549966--61550101	54	2.5	54	87	0	200	26	23	26	23	2.00
61552490--61552524	16	2.2	16	89	0	52	65	5	0	28	1.15
61553379--61553497	60	2.0	60	93	0	202	53	12	0	32	1.44
61553391--61553509	60	2.0	60	91	0	193	55	10	1	32	1.43
61553541--61553566	7	3.7	7	100	0	52	61	0	0	38	0.96
61553940--61554004	24	2.8	23	73	13	69	58	1	0	40	1.07
61558080--61558263	98	1.9	98	84	7	241	46	3	4	45	1.43
61558358--61558433	32	2.3	32	84	6	89	40	9	3	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61562625--61562662	20	1.9	19	89	5	58	23	21	13	42	1.88
61564369--61564431	29	2.2	29	79	0	72	69	9	11	9	1.36
61565333--61565367	6	5.7	6	86	6	52	68	0	14	17	1.21
61565333--61565370	19	2.0	19	94	0	67	65	0	15	18	1.27
61565329--61565367	13	3.1	13	92	3	62	66	0	15	17	1.25
61566876--61567097	44	4.8	43	70	19	144	32	19	20	27	1.97
61566731--61567302	142	4.0	142	91	1	887	32	19	20	28	1.96
61567015--61567245	44	5.0	43	71	14	167	30	19	21	28	1.97
61567377--61567507	50	2.6	50	73	6	131	37	21	16	25	1.93
61568967--61569004	12	3.2	12	88	0	58	34	2	0	63	1.09
61568945--61569035	43	2.1	42	84	9	114	35	5	1	58	1.29
61572307--61572373	31	2.2	31	83	0	80	22	31	22	23	1.98
61572229--61572514	107	2.7	104	75	7	227	24	25	20	29	1.99
61575607--61575655	21	2.4	21	93	3	82	14	12	14	59	1.62
61576003--61576070	29	2.4	28	85	2	82	48	17	4	29	1.67
61576128--61576212	33	2.7	30	80	14	91	47	14	3	35	1.61
61576703--61576742	19	2.0	20	90	4	64	60	2	5	32	1.32
61579806--61580085	138	2.0	138	100	0	560	34	16	10	39	1.82
61582603--61582785	86	2.0	86	79	11	190	49	2	3	44	1.32
61589768--61589807	16	2.5	16	91	0	62	47	2	7	42	1.45
61589803--61589941	75	2.0	73	86	12	202	40	5	7	46	1.55
61589877--61589915	16	2.4	16	91	0	60	35	0	7	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61590151--61590196	19	2.4	19	88	0	65	65	6	6	21	1.39
61590163--61590211	13	3.8	13	81	5	55	67	10	2	20	1.30
61590252--61590292	20	2.0	20	90	0	64	65	4	7	21	1.37
61590371--61590404	16	2.1	17	94	5	61	70	11	0	17	1.16
61590631--61590691	27	2.3	27	91	5	97	21	13	32	32	1.91
61599785--61599809	13	1.9	13	100	0	50	20	8	0	72	1.10
61600246--61600305	31	2.0	30	83	9	77	16	15	13	55	1.70
61607433--61607486	19	2.6	20	82	11	56	57	3	1	37	1.27
61609937--61609995	29	2.0	29	83	6	75	33	13	32	20	1.91
61623067--61623102	6	5.8	6	90	3	54	55	0	27	16	1.42
61623066--61623104	12	3.2	12	88	3	60	58	0	25	15	1.37
61631421--61631469	20	2.7	18	77	22	57	51	4	2	42	1.32
61632962--61633062	45	2.2	45	85	3	150	42	18	16	21	1.89
61634266--61634322	30	1.9	30	86	10	82	52	1	0	45	1.11
61636242--61636328	27	3.2	26	83	6	102	19	27	16	36	1.93
61637806--61637899	47	2.0	47	100	0	188	53	8	4	34	1.51
61642740--61642950	105	2.0	105	94	0	368	35	21	10	32	1.88
61644760--61644807	21	2.3	21	77	0	51	37	6	2	54	1.38
61649922--61650024	25	4.2	24	79	12	93	28	18	23	30	1.98
61649939--61650024	25	3.5	25	84	6	95	29	17	23	30	1.97
61649965--61650045	25	3.2	25	84	6	94	29	17	25	27	1.97
61656697--61656734	17	2.2	18	90	4	60	39	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61664130--61664728	301	2.0	301	100	0	1198	38	15	18	28	1.90
61664715--61664756	21	2.0	21	100	0	84	47	14	4	33	1.65
61676762--61676799	17	2.4	17	91	8	62	55	0	13	31	1.38
61686726--61686778	22	2.5	20	80	14	61	26	1	7	64	1.31
61687058--61687088	16	1.9	16	93	0	53	48	9	6	35	1.62
61687205--61687246	9	4.4	9	82	17	50	30	2	0	66	1.04
61687216--61687339	20	6.6	18	73	7	61	38	0	4	55	1.27
61687258--61687329	20	3.7	20	81	7	76	37	1	8	52	1.40
61690555--61690901	189	1.8	188	81	6	434	37	0	36	25	1.59
61690854--61690929	28	2.7	28	100	0	152	35	0	39	25	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222