Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  140  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45435865--45435916
24
2.3
23
83
6
61
21
9
7
61
1.51
45435979--45436017
10
3.8
10
96
3
69
35
0
2
61
1.10
45448674--45448706
16
2.2
16
89
10
52
18
12
3
66
1.36
45452722--45452763
14
2.9
15
78
7
50
14
7
2
76
1.10
45460994--45461032
2
19.5
2
89
0
60
53
0
43
2
1.14
45469568--45469663
48
2.0
48
81
0
111
36
21
6
35
1.79
45469911--45470036
49
2.6
49
83
0
162
26
31
15
26
1.95
45476819--45476943
51
2.5
50
80
5
135
26
18
25
29
1.98
45477727--45477805
37
2.1
37
88
0
113
25
30
18
25
1.98
45477924--45478528
47
12.7
47
94
2
1048
29
29
8
32
1.87
45477924--45478528
96
6.4
94
94
1
1048
29
29
8
32
1.87
45477924--45478528
143
4.2
143
96
0
1088
29
29
8
32
1.87
45480266--45480290
13
1.9
13
100
0
50
36
16
16
32
1.90
45481198--45481229
16
2.0
16
93
0
55
59
0
15
25
1.36
45484528--45484593
23
2.9
23
79
4
71
39
24
15
21
1.91
45492737--45492811
36
2.1
36
95
5
134
40
8
9
42
1.66
45497202--45497253
11
4.6
11
90
7
70
57
9
1
30
1.42
45506263--45506337
29
2.5
30
82
8
91
41
25
16
17
1.89
45507641--45507686
24
2.0
23
86
4
65
36
21
17
23
1.94
45507109--45508080
324
3.0
324
92
0
1615
30
19
21
29
1.97
45508979--45509016
18
2.1
18
90
0
58
26
5
44
23
1.74
45508988--45509022
18
1.9
18
94
0
61
25
8
40
25
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45509414--45509512
5
18.6
5
70
24
53
73
2
5
19
1.11
45522395--45522441
23
2.0
23
100
0
94
29
21
4
44
1.71
45522647--45522731
41
2.1
41
100
0
170
28
32
2
36
1.70
45529208--45529321
39
2.9
39
84
5
115
30
14
20
35
1.92
45529264--45529667
36
11.0
36
82
5
481
29
14
20
35
1.92
45529264--45529667
73
5.5
73
82
4
485
29
14
20
35
1.92
45529264--45529667
109
3.7
109
86
3
560
29
14
20
35
1.92
45538107--45538153
25
2.0
23
87
8
67
25
0
17
57
1.40
45538305--45538338
17
2.0
17
88
0
50
35
11
8
44
1.72
45538691--45538727
14
2.5
15
86
8
58
24
0
8
67
1.17
45549284--45549480
43
4.6
43
79
6
184
29
28
15
26
1.96
45549841--45549931
43
2.1
43
85
2
121
45
10
10
32
1.75
45554521--45554573
21
2.5
21
71
0
52
52
28
0
18
1.46
45554557--45554666
7
15.4
7
71
11
53
47
28
1
22
1.62
45555159--45555203
22
2.0
22
86
0
63
40
35
0
24
1.56
45555184--45555231
14
3.4
14
91
0
78
29
50
0
20
1.49
45555184--45555231
21
2.3
21
88
0
69
29
50
0
20
1.49
45555519--45555696
7
24.9
7
66
11
56
45
33
1
19
1.61
45555520--45555696
14
11.9
14
68
18
90
45
32
1
19
1.61
45555520--45555696
29
5.9
29
66
22
82
45
32
1
19
1.61
45555591--45555696
21
5.0
21
68
13
63
47
30
1
20
1.61
45555928--45556075
41
3.6
41
88
2
219
27
31
20
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45556013--45556144
68
1.9
69
92
1
221
25
32
20
21
1.97
45566666--45566931
116
2.3
114
87
4
367
36
12
16
33
1.87
45567213--45567419
108
1.9
111
90
6
339
28
18
14
38
1.90
45567050--45567487
214
2.1
209
90
3
671
25
16
13
43
1.85
45569587--45569759
44
4.1
40
66
19
102
33
24
19
22
1.97
45569530--45569810
40
6.6
43
74
11
213
33
23
20
23
1.97
45569530--45569862
128
2.6
127
94
2
580
34
23
19
22
1.97
45571444--45571486
20
2.2
20
88
8
63
44
16
0
39
1.48
45571967--45572195
110
2.1
106
79
11
255
34
17
15
33
1.91
45579505--45579549
18
2.5
19
85
10
67
73
0
0
26
0.84
45580391--45580433
3
14.3
3
100
0
86
67
0
0
32
0.91
45581023--45581178
61
2.8
54
76
15
165
23
17
17
40
1.91
45584411--45584452
11
3.7
11
83
3
57
54
2
11
30
1.49
45584439--45584478
17
2.4
17
95
0
71
57
0
5
37
1.21
45584439--45584485
17
2.7
17
90
3
58
61
0
6
31
1.21
45584632--45584753
38
3.3
38
71
16
130
63
3
10
22
1.41
45584669--45584783
33
3.3
33
67
17
90
66
4
11
18
1.40
45584632--45584793
71
2.3
70
94
1
279
63
4
10
21
1.43
45584754--45584817
26
2.7
23
82
7
65
64
4
10
20
1.43
45584632--45584806
33
5.0
33
66
18
86
64
4
10
21
1.41
45584867--45584900
17
2.0
17
94
0
59
55
5
14
23
1.61
45584716--45585132
124
3.4
120
79
12
395
59
4
11
24
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45585044--45585079
19
1.9
19
88
5
56
66
0
2
30
1.06
45585167--45585209
20
2.2
20
83
8
52
67
2
11
18
1.32
45586460--45586703
88
2.7
88
86
4
294
57
10
5
25
1.54
45586973--45587045
28
2.7
27
76
2
74
43
28
2
24
1.68
45587201--45587361
53
3.1
51
70
8
146
40
17
16
25
1.90
45595864--45595924
20
3.0
20
97
0
113
42
24
27
4
1.75
45602659--45602699
18
2.2
18
86
4
55
14
12
4
68
1.36
45611090--45611146
25
2.3
25
84
3
80
42
14
10
33
1.79
45613989--45614034
20
2.3
20
84
0
56
56
2
2
39
1.24
45614004--45614045
20
2.1
20
86
8
59
50
2
2
45
1.27
45615546--45615594
3
16.3
3
100
0
98
65
0
0
34
0.93
45617239--45617273
18
2.0
17
88
5
52
60
0
5
34
1.21
45617262--45617363
39
2.6
38
81
7
116
57
1
6
33
1.36
45617303--45617361
29
2.0
30
86
3
84
59
3
3
33
1.31
45617989--45618021
12
2.7
13
86
13
52
33
0
0
66
0.92
45618501--45618641
9
14.8
9
68
16
52
35
6
2
55
1.40
45618495--45618544
19
2.7
18
84
12
66
40
0
0
60
0.97
45618495--45618542
18
2.6
17
87
9
60
39
0
0
60
0.97
45618566--45618641
9
7.9
9
74
12
53
32
6
2
57
1.38
45618563--45618602
19
2.1
19
85
4
53
37
10
0
52
1.35
45618566--45618641
29
2.6
30
77
4
84
32
6
2
57
1.38
45618625--45618701
31
2.5
30
74
13
77
40
1
2
55
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45618632--45618680
20
2.4
21
78
18
59
44
0
2
53
1.12
45625205--45625736
43
12.4
43
85
1
620
38
22
18
20
1.93
45631892--45631948
25
2.3
24
78
3
69
24
26
21
28
1.99
45639640--45639693
25
2.2
25
83
3
65
25
25
14
33
1.95
45639648--45639762
25
4.6
25
75
10
94
23
23
22
30
1.99
45650034--45650125
45
2.0
45
87
0
130
28
13
16
42
1.85
45650938--45650991
25
2.2
25
83
12
67
48
1
3
46
1.30
45672959--45672997
20
2.0
20
94
0
69
43
0
2
53
1.14
45675009--45675149
73
1.9
73
89
2
221
26
18
7
46
1.76
45678520--45678553
11
3.0
11
83
8
50
41
2
8
47
1.50
45684159--45684201
19
2.3
19
80
15
54
48
4
0
46
1.22
45687495--45687541
21
2.3
20
78
7
51
63
4
2
29
1.25
45687550--45687622
35
2.1
34
82
7
85
64
1
5
28
1.24
45687766--45687857
40
2.4
39
81
13
102
67
3
3
26
1.21
45688105--45688133
10
2.9
10
100
0
58
41
0
0
58
0.98
45688188--45688378
10
20.6
9
68
18
90
34
2
0
62
1.13
45688197--45688306
39
2.8
40
78
11
122
29
1
0
68
1.06
45688214--45688256
21
2.0
22
86
4
61
25
4
0
69
1.07
45688189--45688334
66
2.2
66
80
9
165
33
1
0
64
1.07
45688109--45688378
9
28.7
9
69
17
97
32
2
1
62
1.21
45688516--45688590
38
2.0
38
100
0
150
36
5
21
37
1.76
45698612--45698671
25
2.5
24
79
12
70
36
11
3
48
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45703828--45703884
29
2.0
29
82
0
69
17
40
29
12
1.86
45705949--45706124
47
3.7
47
78
4
176
27
21
15
35
1.94
45705944--45706114
94
1.8
94
84
2
236
26
22
15
35
1.94
45707458--45707500
21
2.0
21
83
16
54
16
9
2
72
1.21
45707515--45707539
13
1.9
13
100
0
50
16
8
4
72
1.24
45710159--45710212
27
2.0
25
86
10
72
14
14
5
64
1.45
45710739--45710775
16
2.2
18
90
9
60
35
0
2
62
1.10
45711057--45711104
22
2.2
22
81
11
62
43
6
0
50
1.27
45711060--45711104
21
2.1
21
87
4
63
44
6
0
48
1.29
45717427--45717453
13
2.1
13
100
0
54
70
7
7
14
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222