genome.fa.s15.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  176  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56553094--56553147	24	2.2	24	90	0	81	37	3	9	50	1.52
56554987--56555024	20	1.9	20	89	10	60	50	15	7	26	1.72
56555010--56555092	14	5.9	13	70	24	53	46	27	3	21	1.68
56555041--56555093	21	2.5	21	76	8	63	43	32	3	20	1.70
56557355--56557396	20	2.0	20	86	4	57	28	2	2	66	1.16
56558100--56558152	26	2.0	27	88	3	81	60	1	0	37	1.08
56569375--56569568	25	7.8	25	72	5	124	19	25	19	36	1.94
56570876--56571032	18	8.8	18	69	14	85	45	11	10	31	1.75
56570876--56571032	17	8.8	17	71	12	111	45	11	10	31	1.75
56571839--56571889	6	8.5	6	76	8	50	3	23	0	72	1.01
56571822--56571872	24	2.1	24	82	7	59	1	21	0	76	0.88
56571993--56572039	18	2.8	18	81	9	55	0	31	0	68	0.90
56571992--56572065	15	4.8	17	73	20	65	0	32	0	67	0.91
56572577--56572738	30	5.4	30	75	8	96	43	6	21	29	1.77
56572942--56572967	5	5.2	5	100	0	52	80	0	0	19	0.71
56579444--56579510	29	2.3	29	82	5	82	22	16	20	40	1.91
56581747--56581795	24	2.0	24	84	7	64	32	4	24	38	1.74
56585022--56585138	58	2.0	58	98	0	225	25	11	15	47	1.78
56594911--56595149	85	3.0	79	85	7	297	32	20	21	24	1.98
56594911--56595154	42	6.0	42	81	10	290	32	20	21	25	1.98
56595007--56595149	77	1.9	77	92	1	243	32	20	22	25	1.98
56595118--56595200	43	2.0	42	83	11	107	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56595644--56595722	21	3.8	21	84	0	104	5	39	20	35	1.74
56601240--56601574	9	37.8	9	65	20	111	34	2	17	45	1.61
56601233--56601578	16	20.7	16	66	22	128	34	2	17	46	1.60
56601285--56601323	19	2.1	19	85	9	53	30	0	17	51	1.46
56601305--56601410	25	4.2	24	75	10	88	30	1	20	47	1.61
56601278--56601394	52	2.3	50	83	7	137	29	0	21	47	1.56
56601398--56601441	19	2.3	19	92	0	70	36	0	18	45	1.49
56601513--56601553	13	2.8	15	85	14	59	34	0	19	46	1.50
56604911--56605034	7	17.0	7	68	20	58	33	41	0	23	1.60
56604911--56605034	15	8.5	15	67	19	66	33	41	0	23	1.60
56604912--56604998	45	2.0	44	84	11	115	31	43	1	24	1.61
56604920--56605031	29	3.8	29	77	7	84	32	42	0	24	1.61
56605787--56605979	40	4.8	41	71	12	123	36	24	16	22	1.94
56605807--56605953	41	3.6	40	73	10	111	35	25	14	24	1.94
56605800--56605896	42	2.3	42	82	5	117	39	23	13	23	1.90
56609515--56609573	18	3.3	18	69	9	57	15	27	3	54	1.57
56609957--56610180	118	1.9	119	81	9	280	26	5	26	41	1.77
56611336--56611424	37	2.4	37	94	0	160	43	14	7	33	1.74
56614640--56614847	91	2.3	91	92	0	335	46	3	4	45	1.41
56614762--56614822	28	2.2	28	85	5	81	45	0	3	50	1.17
56614680--56614822	44	3.2	43	68	20	112	46	2	3	47	1.34
56614863--56615281	120	3.5	120	95	1	723	42	2	5	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56614984--56615018	18	2.0	17	88	5	52	45	0	0	54	0.99
56615108--56615159	15	3.6	15	80	12	56	44	0	1	53	1.11
56615238--56615279	15	2.7	16	82	14	52	45	0	2	52	1.13
56615229--56615270	15	2.9	15	82	10	52	47	0	0	52	1.00
56615452--56615477	5	5.2	5	100	0	52	42	19	19	19	1.90
56616444--56616480	9	4.1	9	92	0	65	29	10	13	45	1.77
56616534--56616564	9	3.4	9	90	0	53	38	22	12	25	1.90
56617836--56617871	13	2.8	14	88	12	51	38	25	8	27	1.84
56619886--56619932	24	2.0	23	91	4	76	2	17	10	70	1.26
56628993--56629054	4	15.8	4	72	21	51	24	1	1	72	1.02
56628993--56629064	24	3.1	22	79	18	67	23	4	1	70	1.12
56629016--56629076	22	2.8	22	82	9	72	21	8	0	70	1.13
56629105--56629143	17	2.3	18	82	13	55	20	7	0	71	1.10
56629114--56629174	20	2.9	20	78	19	70	24	6	1	67	1.24
56631833--56631888	28	2.0	28	100	0	112	50	7	17	25	1.72
56643123--56643183	30	2.0	30	96	0	113	39	18	22	19	1.92
56646691--56647402	89	7.8	88	77	8	430	33	15	19	31	1.93
56646599--56647367	184	4.2	177	77	8	526	33	15	19	31	1.93
56646694--56647404	44	15.6	44	73	8	395	33	15	19	31	1.93
56646599--56647402	139	5.9	133	75	7	522	33	15	19	31	1.93
56647144--56647402	94	2.7	95	85	2	369	32	16	19	31	1.94
56647421--56647522	44	2.3	44	89	0	150	35	16	23	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56648942--56648977	9	4.0	9	92	7	56	22	2	0	75	0.94
56648920--56648999	38	2.1	39	81	6	92	22	6	1	70	1.17
56653701--56653754	23	2.3	23	81	6	56	31	14	0	53	1.41
56656758--56656793	17	2.1	17	100	0	72	19	11	33	36	1.87
56662533--56662607	36	2.1	36	80	14	84	53	2	1	42	1.23
56669527--56669565	21	1.9	20	84	5	51	53	10	5	30	1.56
56672186--56672235	15	3.2	15	76	20	57	50	14	0	36	1.43
56672913--56672940	14	2.0	14	100	0	56	0	14	0	85	0.59
56673026--56673078	5	10.8	5	93	4	90	56	0	0	43	0.99
56673066--56673109	22	1.9	24	90	9	74	47	6	0	45	1.29
56673043--56673127	20	4.2	20	75	21	70	49	4	1	44	1.30
56679359--56679408	25	2.0	25	96	0	91	26	20	6	48	1.72
56683637--56683688	11	4.7	11	76	9	61	59	5	0	34	1.21
56683616--56683688	33	2.2	32	95	2	128	54	6	0	38	1.27
56686778--56686816	14	2.9	14	92	3	62	66	2	0	30	1.05
56689711--56689817	55	1.9	57	81	7	130	40	1	1	56	1.21
56690280--56690344	11	5.8	12	81	15	77	24	32	1	41	1.64
56690308--56690403	51	1.9	50	86	4	122	27	25	3	44	1.69
56692739--56692994	21	12.0	21	82	4	275	44	29	0	25	1.57
56692739--56692994	43	6.0	42	79	7	277	44	29	0	25	1.57
56692803--56692880	14	6.0	14	68	26	55	44	35	0	19	1.51
56692803--56692868	7	9.4	7	76	11	64	46	34	0	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56696167--56696733	125	4.5	125	89	1	832	29	23	16	29	1.97
56696167--56696736	251	2.3	249	89	1	845	29	23	16	30	1.97
56696849--56696885	9	4.1	9	89	0	56	56	27	0	16	1.40
56696849--56696885	18	2.1	18	100	0	74	56	27	0	16	1.40
56700164--56700214	23	2.2	24	79	10	61	62	1	9	25	1.36
56706084--56706138	27	2.2	25	80	9	58	40	7	7	45	1.60
56708881--56708916	7	5.1	7	100	0	72	27	30	13	27	1.94
56717781--56717837	19	2.8	20	71	10	53	26	5	19	49	1.69
56733782--56733814	18	1.9	18	88	11	52	33	12	0	54	1.37
56736083--56736121	20	2.0	20	100	0	78	25	28	5	41	1.77
56736931--56737235	44	6.9	44	89	3	470	34	21	12	32	1.90
56736930--56737235	132	2.3	132	95	0	549	34	21	12	32	1.90
56741274--56741320	19	2.5	20	86	6	62	44	8	19	27	1.79
56743493--56743545	3	18.3	3	76	7	56	66	0	1	32	1.03
56743497--56743540	11	3.9	11	87	3	61	63	0	2	34	1.07
56743561--56743603	19	2.2	19	83	4	50	67	6	13	11	1.41
56746625--56746669	23	1.9	24	82	13	58	42	11	24	22	1.86
56753309--56753350	19	2.1	19	83	16	50	50	0	4	45	1.23
56754102--56754147	14	3.3	14	79	11	58	39	2	6	52	1.40
56757833--56757883	24	2.0	26	88	7	79	39	0	7	52	1.30
56759129--56759192	29	2.2	30	86	8	87	43	1	9	45	1.45
56760787--56760844	28	2.1	28	83	6	73	51	13	15	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56762220--56762269	6	8.0	6	86	4	55	78	0	12	10	0.98
56766955--56767136	35	5.4	32	77	9	132	26	23	17	32	1.96
56766974--56767047	35	2.1	35	97	0	139	29	28	14	27	1.95
56766941--56767068	35	3.7	35	83	4	127	28	26	14	29	1.95
56767013--56767203	101	1.9	101	88	0	292	26	22	17	34	1.96
56781458--56781516	29	2.0	29	83	0	73	37	32	8	22	1.84
56788911--56789046	67	2.0	67	98	0	263	28	23	13	33	1.93
56789540--56789608	34	2.0	34	100	0	138	42	5	17	34	1.73
56802007--56802546	138	3.9	138	82	3	647	29	23	19	27	1.98
56802662--56802768	17	6.3	17	80	0	124	35	11	14	38	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222