genome.fa.s15.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  218  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68743943--68743999	9	6.4	9	80	15	66	24	10	21	43	1.83
68748832--68748955	60	2.1	60	100	0	230	54	3	12	29	1.54
68750906--68751158	73	3.5	72	92	3	400	30	18	18	32	1.95
68751091--68751337	88	2.8	87	83	5	282	34	19	17	28	1.94
68751559--68751896	72	4.5	74	87	5	457	31	20	15	31	1.94
68751559--68751914	149	2.4	147	84	5	459	34	19	15	30	1.93
68751914--68752088	70	2.5	70	85	2	219	33	22	14	29	1.94
68755813--68756061	50	4.8	50	84	4	275	20	28	24	26	1.99
68755812--68756061	100	2.4	104	86	6	348	20	28	24	26	1.99
68756156--68756187	13	2.5	13	94	0	55	56	12	0	31	1.37
68756401--68756458	30	1.9	30	85	0	80	31	22	3	43	1.70
68764947--68764973	11	2.5	11	100	0	54	55	7	0	37	1.28
68770870--68770930	30	2.1	30	84	3	79	39	0	40	19	1.52
68775939--68775978	21	1.9	21	84	0	53	37	5	10	47	1.59
68784495--68784531	18	2.1	18	94	0	65	67	24	0	8	1.17
68784507--68784535	15	1.9	15	100	0	58	68	24	0	6	1.13
68788035--68788095	30	2.0	30	83	3	77	40	11	4	42	1.62
68788555--68788613	31	1.9	31	92	0	100	25	20	10	44	1.83
68795951--68796014	34	1.9	34	90	3	103	28	37	26	7	1.84
68796026--68796146	21	5.3	22	68	16	68	58	0	1	39	1.08
68796040--68796154	11	11.1	11	69	21	70	58	0	1	40	1.08
68796040--68796171	71	1.9	70	90	6	205	60	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68796046--68796129	39	2.2	39	91	4	134	64	0	1	34	1.02
68796086--68796161	33	2.4	32	93	4	127	61	0	1	36	1.04
68797112--68797186	38	2.0	38	89	0	114	53	12	6	28	1.63
68807452--68807561	31	3.6	32	72	13	86	23	8	15	52	1.69
68819069--68819095	10	2.7	10	100	0	54	29	0	0	70	0.88
68819474--68819533	30	2.0	31	87	6	88	50	15	5	30	1.65
68823544--68823595	23	2.3	22	93	3	86	46	0	1	51	1.12
68844321--68844384	31	2.1	31	84	0	83	17	14	15	53	1.74
68848001--68848031	3	10.3	3	100	0	62	32	0	0	67	0.91
68848202--68848241	19	2.0	21	85	9	57	30	2	0	67	1.04
68853316--68853364	25	1.9	25	84	12	64	36	10	4	48	1.56
68865535--68865883	177	2.0	174	94	1	617	40	18	16	24	1.90
68877513--68877902	195	2.0	192	91	1	627	42	18	15	23	1.88
68886875--68886912	20	1.9	20	94	0	67	31	0	18	50	1.47
68891704--68891817	39	3.1	39	92	7	186	28	39	5	26	1.78
68893964--68894015	25	2.1	25	88	0	77	63	15	5	15	1.48
68897609--68897677	23	3.2	23	82	17	94	31	26	20	21	1.98
68897911--68897949	18	2.2	17	86	13	53	46	20	0	33	1.51
68910436--68910483	24	2.1	23	85	11	64	64	12	8	14	1.49
68913001--68913039	18	2.2	18	86	4	53	48	2	0	48	1.15
68927540--68927586	19	2.5	19	96	0	85	19	14	4	61	1.49
68933176--68933246	33	2.2	33	97	0	133	45	0	5	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68936493--68936533	22	2.0	20	85	9	55	48	2	12	36	1.54
68939802--68939878	29	2.5	30	81	8	93	31	5	12	50	1.63
68945088--68945115	9	3.1	9	100	0	56	57	10	0	32	1.33
68945058--68945267	68	3.1	68	96	1	379	45	9	5	40	1.58
68945156--68945183	9	3.1	9	100	0	56	57	10	0	32	1.33
68945256--68945297	16	2.6	16	92	0	66	42	7	2	47	1.43
68945271--68945332	23	2.8	23	80	4	65	46	1	1	50	1.20
68952429--68952501	29	2.5	30	84	2	94	41	15	10	32	1.82
68962149--68962220	35	2.1	34	84	10	92	48	0	0	51	1.00
68963647--68963683	18	2.0	19	89	5	58	24	5	5	64	1.36
68963916--68963951	18	2.0	18	88	0	54	33	13	13	38	1.85
68967236--68967267	3	10.7	3	93	0	55	37	0	0	62	0.95
68986318--68986378	32	1.9	32	96	0	113	32	18	11	37	1.86
69001961--69001992	2	15.5	2	93	6	55	50	3	0	46	1.17
69002124--69002373	81	3.1	81	88	0	374	34	16	21	27	1.95
69002068--69002373	162	1.9	164	86	5	438	34	17	21	26	1.95
69017160--69017243	25	3.4	25	84	0	105	21	26	19	33	1.97
69018835--69018877	21	2.0	21	86	4	59	72	2	11	13	1.22
69022226--69022331	54	2.0	54	96	0	194	39	15	9	35	1.79
69022325--69022381	29	2.0	29	96	0	105	35	15	10	38	1.82
69028006--69028030	11	2.3	11	100	0	50	76	0	0	24	0.80
69031043--69031079	17	2.2	17	100	0	74	59	10	13	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69032063--69032135	28	2.5	29	84	8	87	63	2	0	34	1.09
69032203--69032267	21	3.0	21	82	12	71	23	7	3	66	1.32
69032437--69032541	50	2.1	50	87	0	147	42	6	10	40	1.65
69036513--69036549	9	4.1	9	89	0	56	48	10	10	29	1.72
69037030--69037092	12	5.2	12	72	16	58	36	0	0	63	0.95
69037029--69037092	9	7.2	9	72	20	55	35	0	0	64	0.94
69038437--69038499	29	2.2	30	91	5	103	61	0	0	38	0.96
69038596--69038713	10	12.7	10	72	18	60	30	2	0	66	1.11
69038609--69038717	9	12.2	8	75	15	58	30	2	0	66	1.12
69038598--69038712	19	5.7	19	70	17	72	30	2	0	66	1.11
69038628--69038696	17	4.0	18	75	14	56	33	2	0	63	1.09
69042293--69042341	25	2.0	25	84	8	64	46	8	12	32	1.71
69045125--69045235	55	2.0	55	96	0	204	45	14	10	29	1.79
69048045--69048078	18	1.9	18	88	5	52	29	0	5	64	1.17
69048579--69048607	5	5.8	5	100	0	58	79	0	0	20	0.74
69056195--69056242	23	2.0	24	92	4	80	60	16	8	14	1.57
69069461--69069513	24	2.2	25	86	3	72	45	0	3	50	1.19
69069492--69069563	20	3.7	19	87	7	92	36	1	6	55	1.35
69069456--69069562	39	2.6	41	84	14	123	38	0	5	55	1.30
69070367--69070406	16	2.6	16	92	4	64	62	2	2	32	1.22
69070367--69070406	8	5.1	8	84	6	55	62	2	2	32	1.22
69070562--69070610	25	2.0	25	87	0	71	51	4	8	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69070650--69070779	23	5.6	25	71	14	82	57	2	4	35	1.32
69071306--69071424	30	4.0	30	95	0	211	20	3	49	26	1.64
69072284--69072346	14	4.5	14	82	7	74	60	4	14	20	1.52
69072211--69072435	117	1.9	117	84	3	301	43	16	17	22	1.87
69072644--69072694	14	3.6	14	77	12	50	64	3	11	19	1.41
69072506--69072752	106	2.4	102	83	6	291	40	17	15	26	1.89
69072711--69072918	76	2.8	75	87	2	303	32	21	15	29	1.95
69072674--69072915	76	3.2	74	84	5	299	34	20	16	28	1.94
69072905--69072932	14	2.0	14	100	0	56	57	7	21	14	1.61
69072914--69073082	73	2.3	74	83	2	214	36	18	17	27	1.94
69073062--69073111	14	3.6	14	86	7	66	66	4	10	20	1.38
69073091--69073332	78	3.2	75	86	5	325	37	19	16	26	1.93
69073091--69073496	71	5.3	71	76	16	318	36	18	16	28	1.92
69073213--69073565	155	2.2	156	83	8	441	34	18	16	30	1.93
69073621--69073813	72	2.6	73	81	8	223	34	21	14	29	1.93
69073621--69074191	74	7.5	73	73	12	413	33	21	15	28	1.95
69082515--69082554	16	2.6	16	92	4	64	62	2	2	32	1.22
69082515--69082554	8	5.1	8	84	6	55	62	2	2	32	1.22
69082708--69082772	25	2.8	24	83	6	80	52	6	7	33	1.55
69082795--69082928	25	5.6	25	68	15	77	57	2	4	35	1.34
69083409--69083571	30	5.4	30	88	1	213	21	3	48	26	1.67
69090593--69090663	33	2.2	33	80	14	76	36	36	12	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69094227--69094272	4	12.0	4	86	9	69	50	26	0	23	1.50
69094230--69094266	18	2.1	18	94	0	65	51	24	0	24	1.49
69094227--69094270	22	2.0	22	95	0	79	50	25	0	25	1.50
69095940--69095979	21	1.9	21	89	0	62	10	7	12	70	1.35
69104505--69104561	29	1.9	30	86	10	82	42	14	8	35	1.76
69108475--69108500	8	3.2	8	100	0	52	23	11	11	53	1.69
69108727--69108759	16	2.1	16	88	11	50	48	0	9	42	1.35
69112280--69112584	86	3.6	83	80	6	330	34	5	26	33	1.79
69112627--69112674	24	2.0	24	100	0	96	33	4	25	37	1.75
69115104--69115192	4	22.8	4	83	4	119	44	29	2	23	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222