genome.fa.s15.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  129  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41645225--41645574	81	4.3	80	78	7	307	19	17	21	41	1.90
41646188--41646234	24	1.9	24	86	4	67	25	34	0	40	1.56
41647673--41647779	26	4.1	26	86	4	144	40	24	18	16	1.91
41647924--41648275	27	13.1	27	81	4	304	19	17	21	41	1.91
41652928--41652956	15	1.9	15	100	0	58	31	6	27	34	1.83
41661659--41661689	15	2.1	15	93	0	53	80	0	3	16	0.83
41663822--41664012	51	3.8	51	79	8	237	31	28	16	23	1.96
41663820--41664004	101	1.8	102	91	3	311	31	28	16	23	1.96
41663817--41664042	101	2.2	101	84	6	296	30	29	15	24	1.96
41669049--41669133	31	2.6	32	76	14	86	56	7	0	36	1.27
41672190--41672214	11	2.3	11	100	0	50	32	0	40	28	1.57
41673381--41673493	25	4.5	25	73	6	70	32	20	19	27	1.97
41673381--41673504	50	2.5	49	81	7	135	33	19	20	26	1.97
41683682--41683920	58	4.1	58	87	5	322	40	14	24	20	1.90
41683682--41683949	29	9.2	29	82	6	283	40	14	23	21	1.90
41688546--41688611	33	2.0	33	100	0	132	27	24	6	42	1.78
41697063--41697346	146	1.9	148	85	3	394	42	13	16	27	1.86
41702536--41702614	37	2.1	37	90	0	122	25	31	18	24	1.98
41702733--41703089	47	7.6	47	93	1	588	29	29	8	32	1.87
41710672--41710731	22	2.7	23	81	2	77	55	3	3	38	1.33
41722375--41722605	67	3.5	67	80	2	268	36	14	21	27	1.92
41722772--41722822	19	2.7	20	74	20	54	58	5	23	11	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41723675--41723716	20	2.1	20	90	0	66	23	26	23	26	2.00
41729402--41729445	21	2.1	21	91	4	72	22	6	13	56	1.61
41729494--41729583	21	4.4	21	72	9	69	24	8	11	55	1.63
41736764--41736823	30	2.0	31	86	3	86	40	0	38	21	1.54
41758100--41758227	44	2.9	44	83	11	138	26	25	19	28	1.99
41758218--41758670	88	5.1	88	91	1	712	27	27	19	25	1.99
41758672--41758795	44	2.8	45	82	9	123	27	25	19	28	1.99
41758710--41758824	44	2.6	45	76	14	112	31	25	17	26	1.97
41758786--41759490	88	8.0	88	92	1	1112	27	27	19	25	1.99
41758097--41759237	568	2.0	567	98	0	2219	27	26	19	26	1.99
41758786--41759490	263	2.7	264	92	2	1132	27	27	19	25	1.99
41769268--41769308	3	13.3	3	84	5	55	60	2	0	36	1.10
41771881--41771940	28	2.2	28	87	3	86	26	5	6	61	1.42
41772670--41772704	18	2.0	18	88	5	54	37	2	0	60	1.12
41775892--41775942	21	2.5	21	77	3	59	74	3	11	9	1.19
41778169--41778206	9	4.2	9	89	0	58	84	0	5	10	0.77
41778321--41778369	12	4.1	12	78	0	53	65	8	0	26	1.20
41778980--41779023	21	2.2	20	87	4	61	75	0	11	13	1.06
41779147--41779185	17	2.3	17	86	8	53	82	2	0	15	0.79
41779955--41781212	89	14.1	89	90	1	1957	28	22	17	31	1.97
41782495--41782536	7	6.0	7	79	20	52	14	14	0	71	1.15
41782495--41782539	14	3.1	15	81	18	60	15	15	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41782495--41782536	21	2.0	21	90	0	66	14	14	0	71	1.15
41785411--41785506	31	3.1	31	95	3	174	31	9	13	45	1.75
41786051--41786165	27	4.2	28	71	19	100	67	12	17	2	1.33
41786099--41786158	23	2.7	23	87	5	88	66	10	21	1	1.30
41789214--41789309	31	3.1	31	95	3	174	31	9	13	45	1.75
41789990--41790031	19	2.2	19	83	8	50	40	9	21	28	1.84
41790474--41790507	16	2.1	16	100	0	68	41	23	17	17	1.90
41791965--41792041	32	2.3	33	82	12	104	54	2	6	36	1.40
41792028--41792089	9	7.0	9	75	3	63	79	0	4	16	0.90
41792855--41792898	21	2.2	20	87	4	61	75	0	11	13	1.06
41798653--41798727	36	2.1	36	82	0	87	49	8	18	24	1.74
41813903--41814099	108	1.8	106	89	4	306	32	20	16	29	1.95
41814365--41814398	4	8.5	4	100	0	68	73	0	0	26	0.83
41815997--41816065	33	2.1	33	97	0	129	47	2	14	34	1.59
41821492--41821605	41	2.9	39	91	8	173	43	2	15	37	1.61
41821495--41821605	35	3.0	35	85	14	168	45	2	16	36	1.62
41828139--41828190	24	2.2	24	89	0	77	50	9	3	36	1.54
41831395--41831446	24	2.2	24	89	0	77	50	9	3	36	1.54
41842338--41842401	22	2.9	22	100	0	128	35	4	32	26	1.77
41856959--41856998	20	2.0	20	85	0	53	52	5	10	32	1.56
41858439--41858524	25	3.4	25	69	6	73	34	24	20	19	1.96
41868228--41868264	3	12.3	3	100	0	74	67	32	0	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870169--41870230	30	2.1	30	81	6	72	40	3	8	48	1.49
41879623--41879784	45	3.6	45	77	4	175	27	12	24	35	1.91
41879634--41879796	90	1.8	88	85	2	227	26	14	25	33	1.94
41880109--41880167	29	2.0	29	96	0	109	38	5	20	35	1.75
41886011--41886052	22	2.0	20	86	9	57	64	2	7	26	1.32
41888949--41889047	50	2.0	50	85	0	135	26	22	30	21	1.99
41896653--41896749	48	2.0	48	97	0	185	30	7	16	45	1.74
41899572--41899623	26	1.9	27	84	7	70	25	3	3	67	1.25
41899907--41899996	30	3.0	30	80	9	103	45	13	5	35	1.67
41902621--41902684	28	2.3	28	97	0	119	50	9	9	31	1.66
41905663--41905944	91	3.0	91	85	6	341	45	3	3	48	1.36
41905785--41905845	28	2.2	28	85	5	81	45	0	3	50	1.17
41905703--41905845	44	3.2	43	69	20	121	46	2	3	48	1.31
41905885--41906417	120	4.4	120	97	0	978	42	2	5	50	1.38
41906010--41906051	15	2.9	15	82	10	52	47	0	0	52	1.00
41906130--41906181	15	3.6	15	80	12	56	44	0	1	53	1.11
41906250--41906301	15	3.6	15	80	12	56	44	0	1	53	1.11
41906379--41906420	15	2.7	16	82	14	52	45	0	2	52	1.13
41906370--41906411	15	2.9	15	82	10	52	47	0	0	52	1.00
41911409--41911455	23	2.0	23	100	0	94	40	4	4	51	1.41
41913643--41913667	11	2.3	11	100	0	50	32	0	28	40	1.57
41917269--41917337	34	2.0	34	97	0	129	44	15	8	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41918859--41919036	43	4.2	43	80	6	184	28	29	18	23	1.98
41918860--41919020	85	1.9	86	85	3	227	27	31	18	22	1.97
41923325--41923351	14	1.9	14	100	0	54	7	55	0	37	1.28
41924089--41924139	22	2.3	22	89	0	84	41	41	0	17	1.50
41924650--41924983	41	8.1	41	87	2	454	29	30	20	18	1.96
41934125--41934177	23	2.4	22	75	9	54	9	18	1	69	1.25
41934170--41934209	18	2.2	18	86	0	53	7	25	2	65	1.32
41937028--41937152	50	2.5	50	80	0	142	28	21	27	23	1.99
41938790--41938865	26	2.9	27	72	9	75	50	0	11	38	1.39
41939247--41939280	13	2.5	13	90	4	50	23	23	26	26	2.00
41939883--41939949	23	2.9	23	82	4	73	44	2	17	34	1.64
41940043--41940501	54	8.4	54	78	4	377	38	14	20	27	1.91
41940044--41940468	162	2.6	161	81	4	433	38	13	19	28	1.90
41945457--41945488	16	1.9	17	93	6	57	50	0	6	43	1.27
41946370--41946411	21	2.0	21	90	4	66	83	0	9	7	0.81
41946371--41946412	16	2.7	15	79	17	50	83	0	9	7	0.81
41946370--41946412	22	2.0	22	86	9	61	83	0	9	6	0.80
41955586--41955663	29	2.7	29	86	2	104	51	10	2	35	1.50
41955598--41955669	28	2.6	27	86	6	90	50	11	4	34	1.57
41956252--41956325	37	2.0	37	100	0	148	48	10	8	32	1.67
41961213--41961290	29	2.7	29	84	2	95	50	12	1	35	1.49
41961231--41961307	28	2.8	28	86	4	93	49	12	5	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41962999--41963094	33	3.2	33	64	27	84	44	14	9	31	1.77
41976657--41976713	7	8.1	7	96	0	96	40	0	31	28	1.57
41976660--41976763	14	7.4	14	80	4	102	38	0	29	31	1.58
41976657--41976763	21	5.1	21	78	4	108	39	0	29	30	1.57
41976660--41976763	7	14.9	7	86	0	91	38	0	29	31	1.58
41985425--41985456	14	2.3	14	100	0	64	6	15	46	31	1.71
41990551--41990582	14	2.3	14	100	0	64	6	15	46	31	1.71
41996533--41996813	95	3.0	94	87	2	375	24	17	22	35	1.95
41999735--41999805	26	2.7	26	86	6	90	33	9	28	28	1.89
42003770--42003951	96	1.9	96	83	4	240	29	12	14	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222