genome.fa.s15.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  163  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52112794--52113021	91	2.5	91	88	8	313	41	1	11	44	1.51
52112881--52113047	57	2.9	57	98	0	325	41	1	11	46	1.48
52112794--52113038	74	3.4	73	78	16	285	41	1	12	44	1.51
52115169--52115605	84	5.1	84	91	3	694	29	19	18	31	1.96
52115169--52115605	172	2.6	172	93	1	747	29	19	18	31	1.96
52118125--52118379	112	2.3	112	93	0	420	27	27	17	28	1.98
52118326--52118459	40	3.3	40	90	1	196	20	30	16	32	1.95
52118730--52118764	18	1.9	18	88	11	54	62	5	0	31	1.18
52120241--52120618	44	8.6	44	73	7	169	29	24	18	28	1.98
52120224--52120766	218	2.5	217	88	0	791	28	24	18	28	1.98
52120735--52121254	128	4.0	128	92	1	844	25	24	19	30	1.98
52120759--52121251	257	1.9	257	95	0	896	25	24	18	30	1.98
52122630--52122674	15	2.9	15	90	9	65	13	8	0	77	0.98
52122628--52122672	22	2.0	23	91	4	74	15	6	0	77	0.96
52125591--52125641	25	2.0	25	100	0	102	23	23	21	31	1.98
52129851--52130037	90	2.1	90	87	2	268	49	11	17	20	1.78
52135186--52135283	49	2.0	49	91	0	160	40	14	10	34	1.79
52138422--52138828	124	3.3	124	90	1	602	33	17	19	29	1.95
52141417--52141452	14	2.6	14	95	0	63	36	16	25	22	1.94
52142398--52142440	18	2.4	18	92	0	68	44	6	27	20	1.77
52144240--52144264	11	2.3	11	100	0	50	48	8	28	16	1.74
52144275--52144337	11	5.7	12	78	17	66	42	1	31	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52144277--52144337	22	2.8	22	85	9	81	42	1	32	22	1.64
52144275--52144337	33	1.9	33	87	12	94	42	1	31	23	1.64
52144296--52144349	22	2.4	22	84	3	63	48	1	27	22	1.61
52145021--52145097	30	2.6	29	80	10	84	49	2	1	46	1.23
52163131--52163160	13	2.3	13	94	0	51	43	3	0	53	1.17
52165351--52165403	23	2.2	24	86	3	72	35	3	7	52	1.48
52190836--52190906	24	3.0	24	93	0	115	38	16	5	39	1.73
52191053--52191116	30	2.1	30	85	5	83	37	20	26	15	1.92
52196674--52196773	17	5.5	17	67	13	65	33	3	13	51	1.56
52196670--52196782	37	3.1	37	92	0	181	34	3	14	47	1.61
52196692--52196756	20	3.4	19	71	14	62	33	4	15	46	1.66
52196781--52196820	9	4.4	9	90	0	62	25	7	27	40	1.82
52197771--52197832	25	2.4	27	81	13	76	40	0	1	58	1.08
52203129--52203351	10	22.9	9	66	19	69	34	4	2	58	1.32
52206019--52206074	16	3.6	16	76	16	64	46	1	0	51	1.11
52206156--52206212	15	3.5	15	71	17	51	49	1	1	47	1.22
52211697--52211807	37	3.0	37	93	1	188	25	22	15	36	1.93
52211771--52211940	46	3.6	46	84	9	214	30	21	12	34	1.91
52215977--52216015	14	2.8	14	88	0	60	41	30	2	25	1.69
52216963--52217007	18	2.3	20	85	7	58	13	13	0	73	1.10
52222700--52222780	20	4.1	20	69	22	53	18	24	18	38	1.93
52228435--52228472	8	4.8	8	84	9	51	34	2	0	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52228444--52228473	9	3.4	9	95	4	53	30	0	0	70	0.88
52228528--52228591	19	3.2	19	72	14	58	39	4	0	56	1.20
52231094--52231295	109	1.9	109	93	2	352	33	19	17	29	1.95
52231884--52231934	22	2.3	22	93	0	84	50	0	9	39	1.35
52231886--52231944	22	2.8	21	85	10	68	52	1	8	37	1.42
52233580--52233696	44	2.7	44	76	11	123	23	23	24	28	2.00
52233987--52234213	44	5.2	44	65	12	160	27	23	21	27	1.99
52233848--52234263	88	4.8	88	89	1	556	25	21	22	30	1.99
52234031--52234257	44	5.2	44	64	14	117	25	22	22	28	1.99
52235337--52235383	21	2.2	21	84	0	58	27	38	8	25	1.85
52238518--52238566	19	2.5	20	80	6	57	40	12	20	26	1.87
52239948--52240149	109	1.9	109	93	2	352	33	19	17	29	1.95
52240740--52240790	22	2.3	22	93	0	84	50	0	9	39	1.35
52240742--52240800	22	2.8	21	85	10	68	52	1	8	37	1.42
52242412--52242447	14	2.6	14	86	0	54	61	0	0	38	0.96
52242925--52242951	14	1.9	14	100	0	54	44	0	3	51	1.19
52244102--52244144	2	21.5	2	100	0	86	51	0	48	0	1.00
52246279--52246320	21	2.0	21	86	9	59	50	0	4	45	1.23
52255377--52255485	41	2.6	41	88	1	155	26	21	29	22	1.99
52258064--52258126	25	2.6	24	82	5	81	19	26	19	34	1.95
52258271--52258387	24	4.8	23	72	8	90	17	25	23	33	1.96
52258271--52258380	49	2.2	49	87	3	150	18	26	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52264614--52264676	25	2.6	24	75	5	63	19	26	19	34	1.95
52264776--52264899	24	4.9	25	66	15	60	15	23	21	39	1.91
52269428--52269504	35	2.1	36	92	4	129	25	9	14	50	1.72
52282963--52283000	14	2.7	14	91	0	58	78	2	10	7	1.04
52286695--52286914	84	2.6	86	82	5	247	35	15	18	30	1.92
52289090--52289139	19	2.5	20	77	6	57	52	0	8	40	1.31
52291554--52291602	24	2.0	24	100	0	98	28	16	20	34	1.94
52312561--52312640	29	2.6	32	75	13	96	36	3	0	60	1.15
52314357--52314550	104	1.9	105	81	3	239	19	31	26	22	1.97
52323447--52323492	23	2.0	23	82	0	56	30	13	32	23	1.93
52323965--52323994	16	1.9	15	93	6	51	23	0	10	66	1.21
52324125--52324348	113	2.0	113	95	0	403	35	12	13	37	1.83
52328188--52328329	57	2.5	57	83	4	198	45	1	2	50	1.25
52329664--52329695	11	2.9	11	95	0	55	34	34	0	31	1.58
52331522--52331564	18	2.4	18	88	0	59	18	30	9	41	1.82
52331801--52331828	14	2.0	14	100	0	56	28	0	7	64	1.20
52331767--52331815	9	5.3	9	81	13	64	28	0	8	63	1.23
52331808--52332056	49	5.1	49	96	0	419	42	3	8	46	1.50
52335264--52335549	124	2.3	124	88	1	430	29	19	18	32	1.96
52335736--52335774	12	3.2	12	88	3	51	38	38	0	23	1.55
52336574--52336624	19	2.5	20	82	14	61	52	0	1	45	1.12
52338105--52338143	21	1.9	19	85	10	51	35	10	0	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52339466--52339497	3	10.7	3	93	0	55	28	0	0	71	0.86
52342218--52342263	23	2.0	23	86	0	65	54	0	4	41	1.20
52342588--52342614	3	9.0	3	100	0	54	66	0	0	33	0.92
52343864--52343902	16	2.4	17	87	8	55	2	0	15	82	0.79
52343864--52343902	20	2.0	20	94	0	69	2	0	15	82	0.79
52344190--52344266	37	2.1	38	95	2	138	35	5	22	37	1.76
52345992--52346032	20	2.0	20	95	0	73	43	46	0	9	1.36
52349675--52349727	20	2.4	23	79	20	60	62	3	3	30	1.30
52350817--52350858	19	2.3	18	84	12	50	7	0	11	80	0.88
52351934--52351988	20	2.8	20	88	0	83	25	29	16	29	1.97
52352326--52352649	45	7.2	45	98	0	621	37	15	21	26	1.93
52353269--52353412	68	2.2	66	96	2	261	50	15	20	13	1.77
52366479--52366569	42	2.2	42	89	0	146	23	26	34	16	1.95
52366479--52366587	42	2.6	42	86	2	139	21	26	34	17	1.95
52369469--52369512	20	2.2	20	87	0	61	43	40	0	15	1.47
52391766--52391830	21	3.1	22	81	14	77	38	9	16	35	1.81
52391766--52391821	19	2.8	19	94	5	94	37	10	16	35	1.83
52391865--52391929	16	4.1	16	95	0	121	38	6	35	20	1.77
52395501--52395576	36	2.1	36	80	11	84	38	9	1	51	1.42
52395669--52395711	23	1.9	22	90	4	68	32	6	4	55	1.47
52400622--52400650	12	2.4	12	100	0	58	41	6	31	20	1.79
52411864--52411977	29	3.9	29	78	15	103	34	21	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52411876--52412024	28	5.2	28	85	3	165	36	20	14	27	1.92
52414479--52414536	22	2.6	22	72	0	62	36	17	20	25	1.94
52420378--52420565	41	4.5	41	77	10	177	34	24	17	24	1.96
52420364--52420525	84	1.9	85	91	3	265	35	24	18	22	1.96
52421384--52421420	17	2.3	17	90	9	60	54	24	0	21	1.45
52423410--52423490	42	1.9	42	85	5	110	30	22	14	32	1.94
52426206--52426479	41	6.6	40	76	9	244	34	24	16	24	1.95
52426201--52426438	84	2.8	84	91	2	397	34	26	16	22	1.95
52426206--52426459	125	2.0	126	80	8	279	35	24	16	23	1.95
52429085--52429347	53	4.9	52	84	3	301	25	23	14	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222