Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  39  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11566012--11566065
6
8.7
6
86
8
63
14
5
11
68
1.37
11566031--11566086
6
8.4
7
85
14
59
8
0
14
76
1.00
11566018--11566065
13
3.8
13
88
2
71
14
4
12
68
1.34
11566031--11566091
13
4.7
13
83
15
56
8
0
13
78
0.95
11571154--11571187
16
2.1
16
88
0
50
64
0
5
29
1.17
11578449--11578482
13
2.6
13
85
0
50
76
2
0
20
0.92
11606702--11606771
28
2.4
28
83
7
86
38
11
7
42
1.68
11608077--11608124
24
2.0
24
88
8
71
77
2
8
12
1.08
11609361--11609385
8
3.1
8
100
0
50
48
0
0
52
1.00
11629963--11629998
6
6.0
6
100
0
72
0
0
66
33
0.92
11629964--11630007
18
2.4
18
92
0
70
2
0
65
31
1.05
11636962--11637045
41
2.0
41
100
0
168
33
16
16
33
1.92
11646215--11646242
3
9.3
3
100
0
56
0
35
0
64
0.94
11657073--11657097
10
2.5
10
100
0
50
20
24
8
48
1.76
11658288--11658326
20
2.0
20
84
0
51
69
2
2
25
1.14
11660648--11660678
12
2.6
12
89
0
53
29
0
0
70
0.87
11661284--11661340
19
3.1
19
76
2
53
38
5
3
52
1.41
11661294--11661347
19
2.8
20
78
10
60
35
5
1
57
1.33
11661580--11661659
31
2.6
30
82
11
92
35
2
11
51
1.51
11661613--11661676
31
2.1
31
82
11
78
34
3
14
48
1.59
11667612--11667664
26
2.0
26
81
0
61
22
16
1
58
1.48
11671557--11671581
3
8.3
3
100
0
50
32
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11678863--11678905
22
2.0
22
86
4
61
53
11
0
34
1.37
11682535--11683158
312
2.0
312
99
0
1230
36
19
14
30
1.91
11683470--11683507
13
2.7
14
84
8
51
63
13
7
15
1.51
11684440--11684472
17
1.9
17
93
0
57
42
36
0
21
1.53
11686410--11686443
16
2.1
17
94
5
61
11
5
8
73
1.24
11688667--11688791
42
3.0
41
85
9
164
28
16
24
30
1.96
11688667--11688826
84
1.9
84
81
12
195
29
15
24
31
1.95
11688674--11688826
42
3.7
41
82
8
134
29
15
24
31
1.95
11694658--11694771
43
2.7
43
80
1
140
31
21
18
28
1.97
11697199--11697245
24
2.0
24
83
8
60
68
8
8
14
1.39
11697871--11697945
19
3.8
19
87
6
114
36
18
10
34
1.86
11699737--11699796
3
19.7
3
93
3
102
65
1
1
31
1.13
11699975--11700046
36
2.0
36
84
10
94
45
2
12
38
1.56
11702302--11702835
107
5.0
107
88
2
734
37
17
14
30
1.90
11702890--11702920
15
2.1
15
93
0
53
64
6
9
19
1.45
11702971--11703016
16
2.7
17
80
16
51
71
6
0
21
1.08
11703036--11703093
27
2.1
30
81
18
72
68
5
5
20
1.28
11714837--11715052
101
2.1
101
91
0
342
43
1
3
50
1.28
11715113--11715172
18
3.5
16
82
14
59
38
0
3
58
1.15
11715118--11715170
18
3.0
17
91
5
79
41
0
1
56
1.10
11715329--11715438
44
2.6
40
76
17
114
36
30
3
29
1.75
11715341--11715433
44
2.1
46
89
4
145
37
29
4
29
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11715341--11715447
46
2.4
44
85
6
126
39
29
4
26
1.76
11716323--11716487
63
2.6
63
100
0
330
41
19
7
32
1.79
11718317--11718433
60
2.0
60
87
0
171
27
17
23
31
1.97
11727438--11727949
109
4.7
108
91
2
787
34
20
16
29
1.94
11728106--11728176
29
2.8
24
80
19
97
66
7
7
19
1.39
11728120--11728170
18
3.2
18
65
35
53
62
7
7
21
1.48
11728114--11728177
29
2.2
30
97
2
121
67
6
6
20
1.35
11728456--11728563
3
35.7
3
88
5
155
62
0
4
33
1.16
11728614--11728654
19
2.1
20
95
4
75
51
4
21
21
1.67
11729348--11729372
7
3.6
7
100
0
50
76
0
0
24
0.80
11729577--11729627
20
2.5
20
87
0
66
11
19
49
19
1.79
11729970--11730549
50
11.7
50
70
10
314
21
20
24
32
1.97
11729943--11730564
100
6.3
99
85
2
748
22
19
24
33
1.97
11739617--11739879
40
6.6
40
94
0
445
22
28
21
26
1.99
11741436--11741466
15
2.0
16
93
6
55
9
12
0
77
0.99
11742569--11742601
17
1.9
17
88
11
50
39
3
0
57
1.14
11742731--11742783
16
3.3
16
71
10
54
35
11
1
50
1.49
11742867--11742911
19
2.3
19
84
7
54
35
4
2
57
1.31
11754997--11755245
43
5.7
44
75
7
204
28
22
23
25
1.99
11755003--11755246
133
1.8
132
82
4
312
28
22
23
25
1.99
11755085--11755449
199
1.8
204
92
3
623
27
21
23
27
1.99
11757021--11757053
17
1.9
17
88
11
50
39
3
0
57
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11774614--11774903
44
6.6
44
73
8
193
27
22
23
26
1.99
11774660--11774903
90
2.8
87
76
7
222
28
22
23
25
1.99
11774655--11774904
134
1.9
133
81
4
306
28
22
23
25
2.00
11774743--11775113
205
1.8
205
92
0
634
26
20
24
28
1.99
11776759--11776791
17
1.9
17
88
11
50
39
3
0
57
1.14
11776787--11776847
26
2.4
25
78
8
61
36
9
4
49
1.58
11776924--11776976
16
3.3
16
71
10
54
35
11
1
50
1.49
11777897--11778235
107
3.1
109
90
1
511
34
18
15
32
1.92
11778707--11778783
3
25.7
3
86
5
84
58
0
6
35
1.24
11779516--11779551
16
2.2
17
90
5
56
86
0
0
13
0.58
11779753--11779797
20
2.2
20
84
0
54
11
17
48
22
1.78
11779857--11779897
18
2.3
17
84
12
55
2
2
17
78
0.98
11785946--11786018
32
2.2
34
85
7
105
36
0
4
58
1.17
11785985--11786061
27
2.8
27
83
14
95
27
0
6
66
1.16
11785932--11786250
19
17.3
18
66
20
94
33
0
3
62
1.19
11785932--11786270
10
36.6
9
68
19
157
32
1
3
61
1.23
11785979--11786071
27
3.4
27
74
15
91
29
0
5
65
1.14
11786067--11786135
26
2.5
27
81
6
68
31
1
5
60
1.29
11786204--11786250
16
3.0
15
79
11
58
34
2
0
63
1.06
11786632--11786704
26
2.7
27
68
14
62
52
2
0
45
1.15
11786659--11786708
21
2.3
20
83
12
64
54
0
0
46
1.00
11786659--11786708
22
2.3
21
81
18
59
54
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11788776--11788825
19
2.6
19
84
9
57
52
6
4
38
1.45
11788835--11788873
21
1.9
21
85
15
55
71
2
0
25
0.98
11791486--11791511
6
4.3
6
100
0
52
15
46
19
19
1.85
11797730--11797764
5
6.8
5
93
6
61
17
2
0
80
0.84
11809811--11809875
29
2.2
31
81
10
73
40
16
10
32
1.84
11818232--11818273
21
2.0
21
95
0
75
28
14
26
30
1.95
11820232--11820395
87
1.9
86
87
1
238
37
17
16
29
1.91
11820382--11820442
30
2.0
30
100
0
122
39
16
9
34
1.82
11821612--11821672
30
2.0
30
100
0
122
32
3
19
44
1.67
11827797--11827852
30
2.0
27
86
13
78
41
0
5
53
1.24
11834242--11834286
15
3.1
15
84
12
58
33
2
0
64
1.06
11838901--11838969
22
2.9
24
65
12
61
24
8
17
49
1.75
11839604--11839682
21
3.8
21
80
6
79
11
16
37
34
1.85
11841346--11841400
15
3.7
15
82
0
56
43
30
5
20
1.74
11841951--11841994
16
2.7
16
78
3
52
61
20
2
15
1.45
11842362--11842402
21
2.0
21
90
9
66
29
26
17
26
1.97
11842437--11842502
31
2.2
31
81
8
73
19
7
21
51
1.71
11843113--11843161
22
2.2
22
85
0
62
16
12
12
59
1.62
11846653--11846689
16
2.4
16
86
13
51
40
2
0
56
1.13
11846653--11846696
15
2.8
16
83
12
56
43
4
0
52
1.22
11847212--11847262
20
2.6
19
84
6
66
50
1
1
45
1.24
11856268--11856308
7
5.6
7
83
11
55
29
2
24
43
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11858902--11858961
28
2.2
27
84
3
75
48
1
1
48
1.21
11860822--11860859
19
2.0
19
89
0
58
39
21
15
23
1.92
11869355--11869595
50
4.7
50
85
5
268
22
28
21
26
1.99
11899675--11899915
50
4.7
52
83
9
271
26
21
29
22
1.99
11904508--11904555
17
2.7
19
74
25
52
62
0
4
33
1.14
11912378--11912422
21
2.1
21
84
12
56
24
17
0
57
1.40
11919954--11920006
21
2.7
19
86
11
79
37
16
11
33
1.85
11920779--11921535
88
8.6
88
84
2
878
21
25
25
27
1.99
11926863--11926980
51
2.3
50
77
9
116
56
6
5
30
1.49
11927236--11927275
3
13.3
3
89
10
64
65
0
0
35
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222