Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  96  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30077822--30078006
94
2.0
94
95
2
336
45
6
9
38
1.62
30077822--30078043
94
2.4
92
85
6
223
46
7
9
37
1.63
30086654--30086920
51
5.3
49
77
7
198
26
14
27
31
1.95
30086688--30086963
101
2.7
101
82
4
324
27
15
26
31
1.95
30092656--30093212
138
4.0
138
87
1
805
45
5
8
40
1.59
30093190--30093351
75
2.1
77
82
3
195
30
13
8
48
1.71
30100147--30100198
24
2.2
24
85
0
68
38
3
7
50
1.50
30105299--30105368
25
2.8
25
84
0
95
25
21
20
32
1.97
30109523--30109831
40
7.8
40
89
2
464
29
20
27
22
1.98
30118175--30118486
40
7.8
40
91
0
500
29
20
27
23
1.99
30132022--30132334
40
7.8
40
91
0
500
29
20
27
23
1.98
30135843--30136107
40
6.7
40
90
4
344
25
26
21
26
2.00
30142528--30142552
11
2.3
11
100
0
50
0
8
0
92
0.40
30148090--30148123
6
5.7
6
89
0
50
76
11
0
11
1.02
30148084--30148123
12
3.3
12
85
0
53
80
10
0
10
0.92
30148085--30148143
12
5.3
11
75
15
50
79
8
3
8
1.03
30149479--30149890
87
4.7
87
93
0
691
28
22
25
23
1.99
30149885--30150210
128
2.5
128
92
0
553
31
19
24
24
1.98
30156444--30156523
31
2.6
31
95
0
142
17
35
23
23
1.96
30157640--30157674
10
3.4
10
84
7
52
51
0
0
48
1.00
30158075--30158116
20
2.1
20
86
0
57
40
7
0
52
1.29
30158782--30158835
4
13.5
4
88
0
81
48
25
1
24
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30159268--30159300
2
16.5
2
100
0
66
51
0
48
0
1.00
30167413--30167485
33
2.2
33
82
0
83
27
21
23
27
1.99
30167586--30167653
26
2.6
26
76
6
75
35
23
19
22
1.96
30176060--30176110
17
3.1
17
74
23
54
7
25
0
66
1.18
30180618--30180664
20
2.5
20
80
10
55
2
19
2
76
0.99
30181237--30181401
50
3.3
49
77
3
177
21
18
23
35
1.95
30181242--30181430
100
1.9
100
86
4
274
23
19
22
33
1.97
30181450--30181872
44
9.3
44
70
15
206
26
21
18
33
1.97
30181477--30181742
139
1.9
141
89
2
419
27
20
19
32
1.97
30181664--30181788
42
2.9
42
84
4
153
27
20
20
32
1.97
30181528--30181902
184
2.0
182
89
2
563
26
20
18
33
1.96
30181980--30182422
87
5.1
87
89
0
663
23
24
22
29
1.99
30182225--30182361
45
3.2
42
64
17
100
23
21
25
29
1.99
30184561--30184620
27
2.2
26
80
8
66
8
5
11
75
1.19
30188949--30188975
11
2.5
11
100
0
54
37
11
33
18
1.86
30190228--30190260
6
5.5
6
100
0
66
84
0
0
15
0.61
30198901--30199247
173
2.0
173
94
0
613
30
20
11
37
1.88
30222296--30222325
15
1.9
16
93
6
53
50
10
0
40
1.36
30224397--30224647
28
8.9
28
83
2
263
24
16
20
38
1.92
30224408--30224692
84
3.4
83
80
7
193
25
17
21
36
1.94
30225888--30225931
22
2.0
23
86
4
63
11
18
2
68
1.30
30228877--30228908
16
2.0
16
93
0
55
25
15
0
59
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30230584--30230968
40
9.6
40
92
1
610
24
28
19
27
1.99
30234405--30234480
37
2.1
37
89
0
116
26
32
18
22
1.97
30234601--30235290
47
14.6
47
93
1
1128
29
30
8
31
1.87
30234601--30235290
190
3.6
190
94
0
1150
29
30
8
31
1.87
30238791--30238986
40
4.9
40
77
6
157
24
30
21
23
1.99
30238876--30239120
80
3.0
80
86
1
312
24
28
20
26
1.99
30238820--30239113
120
2.5
120
80
6
276
25
28
20
25
1.99
30238924--30239121
40
4.9
40
90
2
299
22
28
20
27
1.99
30239139--30239217
29
2.7
29
86
5
106
27
32
15
24
1.95
30239199--30239430
43
5.4
43
95
0
410
25
34
16
23
1.95
30241297--30241372
37
2.1
37
89
0
116
26
32
18
22
1.97
30241493--30242152
47
13.6
47
83
8
784
29
30
8
31
1.87
30241712--30241744
17
1.9
17
100
0
66
27
30
18
24
1.98
30241664--30241791
64
2.0
64
93
0
220
28
28
11
30
1.92
30241568--30242028
160
3.0
158
86
11
704
29
30
9
30
1.88
30241615--30241840
113
2.0
112
92
3
373
30
28
9
31
1.89
30295411--30295439
13
2.2
13
100
0
58
37
31
17
13
1.89
30295545--30295584
21
1.9
21
84
0
53
52
25
5
17
1.64
30297483--30297523
13
3.2
13
86
10
57
0
21
0
78
0.76
30300043--30300238
57
3.7
54
86
5
240
22
19
13
44
1.86
30300094--30300235
54
2.8
49
82
10
176
21
19
14
45
1.84
30303591--30303657
35
1.9
35
100
0
134
38
2
7
50
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30310656--30311093
47
9.2
47
89
3
651
31
8
30
29
1.87
30310656--30311078
96
4.4
96
94
0
706
30
8
30
29
1.87
30313325--30313391
28
2.4
28
84
0
80
28
19
25
26
1.99
30315918--30315949
15
2.1
15
94
0
55
68
9
6
15
1.36
30325892--30325934
11
3.8
11
80
17
52
32
2
0
65
1.06
30329450--30329474
9
2.8
9
100
0
50
68
0
0
32
0.90
30335232--30335309
36
2.1
37
95
2
140
37
3
1
57
1.25
30335493--30335547
21
2.5
22
82
8
67
56
5
1
36
1.33
30335539--30335587
17
2.8
17
78
3
53
61
0
0
38
0.96
30348550--30348610
9
6.8
9
96
0
95
22
9
27
39
1.86
30348770--30348794
12
2.1
12
100
0
50
16
24
36
24
1.94
30349551--30349581
6
5.2
6
92
0
53
16
16
3
64
1.42
30362115--30362594
230
2.1
223
80
7
529
38
10
12
39
1.77
30362818--30362864
20
2.3
20
77
0
58
61
2
2
34
1.20
30363624--30363656
12
2.6
13
85
9
50
48
0
0
51
1.00
30363781--30363827
6
7.8
6
83
7
60
53
0
0
46
1.00
30374677--30374860
52
3.3
53
74
18
169
41
4
3
50
1.40
30374750--30374866
62
1.9
59
83
11
148
41
4
5
49
1.44
30379920--30379984
32
2.0
32
91
5
105
27
7
12
52
1.66
30381855--30381891
18
2.1
18
89
0
56
10
0
16
72
1.10
30381920--30382003
41
2.0
42
88
6
127
33
11
2
52
1.51
30393398--30393443
19
2.4
21
82
17
64
63
6
0
30
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30394836--30394866
10
3.1
10
95
0
53
32
29
0
38
1.57
30398486--30398923
47
9.2
47
90
3
669
29
30
8
31
1.87
30398486--30398925
96
4.6
95
91
2
668
29
30
8
31
1.87
30398491--30398923
145
3.0
143
90
1
686
29
30
8
31
1.87
30405218--30405248
8
3.9
8
100
0
62
77
9
0
12
0.99
30407540--30407816
40
6.9
40
94
0
473
24
28
20
26
1.99
30416030--30416302
40
6.9
40
91
2
446
24
28
20
26
1.99
30424451--30424532
34
2.5
33
92
7
139
28
32
13
25
1.93
30424517--30424588
26
2.8
26
87
10
96
30
31
12
25
1.92
30432789--30433065
40
6.9
40
94
0
473
24
28
20
26
1.99
30441301--30441577
40
6.9
40
94
0
473
24
28
20
26
1.99
30443719--30443870
78
2.0
77
97
1
286
30
16
13
40
1.86
30464976--30465080
40
2.6
39
79
4
102
34
14
30
20
1.93
30476178--30476256
37
2.1
37
90
0
122
25
31
18
24
1.98
30476374--30476857
47
10.2
47
90
2
752
29
30
8
31
1.86
30476374--30476857
96
5.1
94
92
1
743
29
30
8
31
1.86
30483295--30483377
28
3.0
28
83
10
91
16
22
21
38
1.93
30483309--30483378
28
2.6
27
88
2
95
17
20
25
37
1.94
30489508--30489557
24
2.1
24
85
7
66
20
6
8
66
1.40
30491253--30491287
16
2.1
17
89
5
54
37
0
51
11
1.38
30499724--30499945
80
2.8
79
90
1
329
28
19
26
25
1.99
30499728--30499917
40
4.8
40
95
0
335
28
20
26
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30507807--30508000
40
4.9
40
94
0
336
28
20
26
24
1.99
30512475--30512509
16
2.1
17
89
5
54
37
0
51
11
1.38
30520590--30520664
38
1.9
39
94
2
134
29
0
40
30
1.57
30533913--30534096
40
4.6
40
81
6
214
25
27
22
25
2.00
30533913--30534095
79
2.3
81
82
7
214
25
27
21
25
1.99
30547941--30547965
12
2.1
12
100
0
50
60
0
0
40
0.97
30555263--30555354
35
2.7
35
77
3
107
17
26
16
40
1.90
30560164--30560193
9
3.3
9
90
0
51
46
13
10
30
1.75
30560275--30560327
20
2.7
20
88
2
81
54
7
3
33
1.46
30560569--30560614
23
2.0
23
82
0
56
34
6
6
52
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222