genome.fa.s15.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  118  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38133187--38133224	16	2.2	18	86	9	53	50	10	0	39	1.37
38137445--38137477	17	1.9	17	100	0	66	42	9	0	48	1.35
38141992--38142053	31	2.0	31	100	0	124	32	9	16	41	1.80
38148170--38148231	31	2.0	31	100	0	124	32	9	16	41	1.80
38151737--38151819	33	2.5	33	76	9	80	26	2	7	63	1.32
38151752--38151820	14	4.5	14	70	29	52	26	1	7	65	1.27
38154501--38154555	25	2.3	25	75	6	60	45	1	1	50	1.22
38154677--38154724	18	2.8	17	85	14	64	50	2	0	47	1.12
38154721--38154763	23	2.0	23	86	13	65	44	0	0	55	0.99
38154723--38154779	30	1.9	30	85	3	80	43	0	0	56	0.99
38156637--38156693	12	4.9	11	77	8	51	12	8	1	77	1.07
38156649--38156747	50	1.9	50	84	15	130	19	6	5	69	1.28
38156642--38156693	24	2.2	24	86	10	72	13	7	1	76	1.07
38156908--38156968	30	2.1	30	81	6	72	1	62	0	36	1.05
38156902--38156968	14	4.4	16	78	14	70	1	62	0	35	1.04
38156932--38157006	2	39.0	2	73	7	57	5	56	0	38	1.22
38161750--38161826	26	3.2	26	64	21	76	40	0	14	45	1.45
38161763--38161837	21	3.4	21	66	20	62	45	0	10	44	1.38
38161752--38161842	46	2.0	46	100	0	182	41	0	13	45	1.43
38170821--38170858	20	1.9	20	88	0	58	18	26	0	55	1.43
38188614--38188801	40	4.7	40	96	0	340	21	27	20	31	1.98
38209566--38209753	40	4.7	40	96	0	340	21	27	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38210899--38210958	29	1.9	33	83	12	83	36	20	3	40	1.69
38214709--38214811	33	3.1	34	71	5	102	44	0	13	41	1.44
38214720--38214837	34	3.5	33	79	7	123	34	0	17	47	1.48
38218615--38218645	16	1.9	16	93	0	53	29	12	25	32	1.93
38230215--38230242	14	2.0	14	100	0	56	35	7	0	57	1.26
38230690--38230727	19	2.0	19	85	10	51	21	42	0	36	1.53
38240777--38240806	13	2.3	13	100	0	60	80	0	13	6	0.91
38247609--38247655	24	1.9	25	83	12	62	31	21	2	44	1.64
38247867--38247976	57	1.9	56	87	1	157	30	18	5	46	1.71
38247867--38247996	57	2.3	57	84	5	156	27	17	6	47	1.73
38251627--38251802	56	3.1	56	99	0	343	45	9	22	22	1.80
38252977--38253147	79	2.2	79	84	6	213	28	19	26	25	1.99
38252934--38253114	40	4.6	40	80	4	179	26	20	26	25	1.99
38258918--38259093	56	3.1	56	97	1	327	46	9	22	22	1.80
38260224--38260407	79	2.3	81	83	8	218	25	22	27	25	2.00
38260224--38260407	40	4.7	40	83	4	214	25	22	27	25	2.00
38260277--38260440	79	2.1	78	83	7	199	26	21	26	25	1.99
38260235--38260440	39	5.2	39	77	11	163	26	21	26	25	2.00
38262382--38262410	14	2.0	15	93	6	51	6	34	0	58	1.25
38262708--38262758	21	2.6	19	77	17	59	23	33	5	37	1.79
38262708--38262766	21	3.1	18	75	17	57	28	33	5	32	1.79
38274438--38274480	21	2.0	21	95	0	77	25	18	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38275916--38275950	17	2.1	17	94	0	61	2	22	0	74	0.95
38277971--38278188	29	7.5	28	74	10	129	38	12	25	24	1.90
38278020--38278188	58	2.9	56	75	7	160	38	13	26	21	1.91
38278012--38278185	87	2.0	88	85	3	235	38	13	25	22	1.91
38278031--38278201	29	5.9	29	75	8	132	38	14	26	21	1.91
38280558--38280637	30	2.7	30	98	0	151	23	3	25	47	1.68
38286798--38286949	42	3.5	42	76	8	144	26	13	24	34	1.93
38286798--38286968	86	2.0	86	84	6	222	25	14	25	34	1.94
38286867--38286972	43	2.5	42	76	8	115	22	15	27	34	1.94
38290947--38291219	136	2.0	136	96	0	501	42	12	17	27	1.85
38291526--38291575	21	2.3	21	86	10	66	56	0	0	44	0.99
38300819--38300968	53	2.8	53	84	2	203	32	12	26	29	1.92
38301093--38301352	28	9.3	28	81	0	261	26	16	23	34	1.95
38304283--38304326	20	2.2	20	91	4	70	50	2	2	45	1.27
38304287--38304336	20	2.5	20	80	0	64	48	4	2	46	1.32
38307240--38307295	22	2.5	22	85	5	78	33	14	26	25	1.94
38308398--38308434	18	2.1	17	90	5	56	2	18	0	78	0.87
38315457--38315498	9	4.6	9	85	14	59	30	14	21	33	1.93
38315574--38315781	54	3.8	54	82	6	222	30	14	26	27	1.95
38316017--38316089	28	2.6	28	86	6	94	15	15	27	42	1.86
38330366--38330400	14	2.6	14	90	4	54	37	0	2	60	1.12
38330720--38330755	16	2.2	16	90	0	54	36	8	2	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38330977--38331010	16	2.1	16	100	0	68	17	11	14	55	1.68
38330854--38330988	67	2.0	67	97	0	252	12	9	14	63	1.51
38331342--38331662	109	3.0	109	87	1	468	31	15	18	34	1.92
38335380--38335464	40	2.2	40	83	10	104	49	2	3	44	1.32
38345523--38346175	322	2.0	324	95	0	1184	39	15	14	30	1.88
38346232--38346282	25	2.0	25	96	0	93	19	23	13	43	1.87
38348399--38348439	18	2.2	20	86	8	59	46	0	4	48	1.23
38348490--38348535	24	1.9	24	95	0	83	28	13	10	47	1.76
38348984--38349268	151	1.9	149	81	8	346	43	9	7	39	1.65
38349016--38349301	151	1.9	152	79	11	331	44	11	7	37	1.68
38363485--38363572	42	2.1	42	95	0	158	19	15	26	38	1.92
38364735--38364785	22	2.3	23	80	16	63	41	3	9	45	1.56
38366875--38366924	20	2.3	22	83	10	59	24	4	16	56	1.57
38385599--38385632	17	2.0	17	88	11	52	88	2	8	0	0.62
38386034--38386345	42	7.2	42	81	9	340	21	19	23	35	1.95
38386249--38386345	51	1.9	51	87	8	144	22	18	23	35	1.96
38387145--38387589	145	3.0	144	79	10	479	42	4	9	42	1.59
38388171--38388225	21	2.6	21	85	8	67	20	10	1	67	1.30
38390591--38390734	50	2.9	48	84	4	180	23	17	27	31	1.97
38390602--38390779	51	3.5	50	77	11	166	25	16	25	32	1.96
38390785--38390879	45	2.1	45	88	0	145	26	18	24	30	1.98
38398562--38398852	50	5.8	50	83	2	300	26	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38400868--38400937	27	2.6	27	81	4	70	25	25	14	34	1.94
38405252--38405299	22	2.2	21	81	3	51	43	33	8	14	1.75
38406164--38406283	56	2.1	56	98	0	231	45	9	23	22	1.81
38407410--38407594	40	4.7	40	80	7	191	24	22	28	24	2.00
38407463--38407627	79	2.1	79	82	6	192	26	21	27	24	1.99
38412272--38412372	49	2.1	49	90	0	157	27	25	6	39	1.81
38412748--38412814	30	2.2	30	86	0	98	17	29	25	26	1.98
38412782--38412806	13	1.9	13	100	0	50	8	24	32	36	1.84
38436609--38436642	6	5.7	6	92	0	50	17	23	0	58	1.38
38436609--38436643	18	1.9	18	94	0	61	17	22	0	60	1.37
38442086--38442155	27	2.6	27	95	2	113	31	28	12	27	1.93
38442086--38442183	28	3.5	28	90	2	135	31	28	13	26	1.94
38443929--38443976	24	2.0	24	84	8	62	45	0	14	39	1.45
38463406--38463505	39	2.6	40	87	4	143	38	3	9	50	1.49
38477714--38477914	50	4.0	50	87	8	264	26	21	30	21	1.98
38477714--38477914	105	2.0	99	84	8	262	26	21	30	21	1.98
38478570--38478946	29	13.0	29	82	1	362	37	20	15	26	1.93
38491854--38491901	18	2.6	18	86	3	60	58	0	0	41	0.98
38492507--38492536	14	2.1	14	93	0	51	16	43	0	40	1.48
38496231--38496257	14	1.9	14	100	0	54	37	18	7	37	1.79
38499655--38499701	19	2.4	20	92	7	87	48	14	10	25	1.76
38506573--38506615	9	4.7	9	86	13	61	53	0	11	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38506573--38506615	19	2.3	18	88	11	61	53	0	11	34	1.37
38509838--38510119	27	10.4	27	82	3	271	29	26	15	27	1.96
38509855--38510118	81	3.2	81	90	2	386	29	27	15	27	1.96
38510667--38510691	13	1.9	13	100	0	50	32	16	20	32	1.94
38517249--38517530	27	10.4	27	82	3	271	29	26	15	27	1.96
38517266--38517529	81	3.2	81	90	2	386	29	27	15	27	1.96
38518078--38518102	13	1.9	13	100	0	50	32	16	20	32	1.94
38528282--38528336	20	2.8	20	77	0	56	12	34	21	30	1.91
38533886--38534508	40	15.6	40	94	1	1072	24	27	19	27	1.99
38541718--38542302	40	14.6	40	94	0	1001	24	27	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222