genome.fa.s15.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  103  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32677906--32677949	18	2.4	18	88	3	61	54	0	2	43	1.12
32679545--32679574	10	3.0	10	90	0	51	20	6	0	73	1.05
32687414--32687473	30	2.0	30	90	6	95	35	8	10	46	1.67
32689135--32689605	236	2.0	235	92	0	789	29	17	12	39	1.87
32689676--32689714	10	3.7	10	80	12	51	74	5	2	17	1.12
32689675--32689715	11	3.7	11	86	0	64	75	4	2	17	1.08
32689756--32689796	14	2.8	15	85	7	57	63	2	17	17	1.42
32694133--32694193	25	2.4	25	81	10	72	39	3	0	57	1.15
32698207--32698388	28	6.5	28	92	1	285	27	12	26	33	1.92
32700269--32700299	14	2.2	14	100	0	62	35	6	0	58	1.24
32705101--32705957	426	2.0	426	99	0	1705	25	16	17	39	1.90
32714438--32714794	40	8.9	40	95	0	633	24	28	20	26	1.99
32719184--32719317	40	3.4	39	72	7	117	33	16	23	26	1.95
32719212--32719337	40	3.2	40	76	6	121	39	18	19	23	1.92
32719371--32719488	41	2.9	41	88	1	184	20	16	34	28	1.94
32719573--32719627	25	2.2	26	78	9	62	61	7	9	21	1.50
32720141--32720175	8	4.5	8	92	3	54	11	0	42	45	1.40
32719882--32720604	283	2.5	284	86	8	922	28	2	26	42	1.67
32720370--32720450	21	3.8	21	71	11	67	27	0	33	39	1.57
32720442--32720480	7	5.4	7	81	6	51	17	2	46	33	1.62
32720438--32720480	15	2.9	15	86	3	61	18	2	46	32	1.62
32720389--32720513	14	8.7	15	76	10	66	27	0	36	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32720092--32720646	303	1.8	298	82	5	715	29	1	26	41	1.66
32721307--32721496	98	1.9	97	87	3	274	45	9	10	34	1.71
32723158--32723207	24	2.1	24	100	0	100	30	4	16	50	1.63
32725455--32725763	43	7.3	43	80	3	311	25	18	27	28	1.98
32725455--32725780	85	3.8	84	78	4	314	26	18	27	27	1.98
32736440--32736479	19	2.2	18	90	4	62	50	2	2	45	1.28
32736931--32737317	42	9.2	42	84	1	463	36	22	18	22	1.95
32736931--32737317	209	1.8	209	85	2	544	36	22	18	22	1.95
32737725--32737749	10	2.5	10	100	0	50	0	0	16	84	0.63
32760564--32760717	80	1.9	79	85	6	213	27	27	18	25	1.98
32760587--32760765	40	4.5	40	86	5	220	27	27	20	24	1.99
32781972--32782070	23	4.3	23	93	0	162	33	25	20	21	1.97
32784038--32784071	17	2.0	17	100	0	68	23	17	11	47	1.81
32784213--32784357	50	2.9	50	83	4	159	31	18	22	26	1.97
32784254--32784341	25	3.5	25	79	11	99	32	18	23	25	1.97
32784253--32784364	25	4.5	24	76	13	93	33	20	22	23	1.97
32784260--32784373	50	2.3	50	85	0	147	31	21	23	22	1.98
32785604--32785708	43	2.5	42	80	12	115	20	21	23	33	1.97
32786494--32786545	25	2.1	25	100	0	104	36	19	19	25	1.95
32791966--32792076	56	2.0	56	98	0	213	35	18	10	36	1.85
32794275--32794360	27	3.2	26	90	3	127	43	20	11	24	1.85
32797616--32797688	29	2.5	29	95	0	128	45	13	9	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32803971--32804017	24	1.9	25	83	12	62	48	12	19	19	1.80
32808276--32808373	48	2.0	48	88	0	142	52	4	3	40	1.36
32808770--32808820	24	2.1	25	85	3	68	37	5	1	54	1.36
32812306--32812337	15	2.1	15	94	0	55	68	9	6	15	1.36
32812471--32812531	27	2.3	27	80	8	63	54	9	4	31	1.55
32813972--32814218	50	4.9	49	79	5	199	23	27	21	27	1.99
32818530--32818568	20	2.0	20	90	5	62	30	28	7	33	1.85
32822079--32822144	25	2.7	24	72	4	60	39	15	27	18	1.90
32826821--32826849	13	2.1	14	93	6	51	27	20	20	31	1.98
32828834--32828885	5	10.4	5	85	0	68	19	0	55	25	1.43
32828971--32829011	2	20.5	2	94	0	73	48	2	48	0	1.14
32831373--32831399	14	1.9	14	100	0	54	55	0	7	37	1.28
32835851--32835892	20	2.2	20	95	4	77	35	0	0	64	0.94
32836102--32836140	15	2.3	18	75	25	57	15	30	5	48	1.66
32836108--32836136	15	1.9	15	100	0	58	20	20	6	51	1.70
32845703--32845774	27	2.7	27	82	0	90	13	20	23	41	1.88
32845702--32845800	27	3.7	27	78	5	85	16	21	22	40	1.91
32847216--32847309	24	3.9	24	88	0	143	29	25	22	22	1.99
32850974--32850998	12	2.1	12	100	0	50	24	24	16	36	1.94
32851940--32852009	24	2.9	24	84	0	95	31	18	24	25	1.98
32852303--32852362	28	2.1	28	82	11	70	45	20	5	30	1.72
32860255--32860789	138	3.8	138	79	9	589	45	5	8	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32860427--32860716	148	1.9	150	84	5	392	47	4	8	39	1.56
32868855--32868920	25	2.6	25	87	0	96	27	22	21	28	1.99
32886505--32886703	48	4.1	47	80	5	202	28	21	27	22	1.99
32887773--32887968	43	4.6	43	88	1	295	24	29	18	27	1.98
32888367--32888409	21	2.0	21	86	0	59	2	44	18	34	1.63
32888317--32888479	87	1.9	87	92	0	272	14	25	18	41	1.88
32888372--32888417	21	2.2	21	88	0	65	2	39	19	39	1.64
32889551--32889579	14	2.1	14	100	0	58	48	0	20	31	1.50
32897869--32897930	23	2.7	23	87	0	88	37	27	6	29	1.82
32906904--32906936	5	6.6	5	92	0	57	78	0	3	18	0.87
32908473--32908520	22	2.3	22	85	7	64	60	8	4	27	1.44
32923946--32924014	35	2.0	35	91	0	111	30	7	30	31	1.84
32924866--32924891	13	2.0	13	100	0	52	53	0	0	46	1.00
32933647--32933705	30	2.0	30	90	3	93	52	11	5	30	1.59
32949289--32949440	27	5.6	27	93	3	241	30	28	13	26	1.94
32949289--32949440	55	2.8	55	94	0	259	30	28	13	26	1.94
32952077--32952105	14	2.0	15	93	6	51	75	17	0	6	1.01
32969788--32969832	23	2.0	23	81	0	54	22	0	15	62	1.33
32970120--32970195	36	2.1	36	80	11	84	38	9	1	51	1.42
32970291--32970334	23	2.0	22	90	4	70	34	6	2	56	1.38
32976029--32976290	39	6.7	40	88	7	328	24	27	22	25	2.00
32979679--32979719	20	2.0	21	86	13	59	58	0	7	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32980695--32980746	21	2.5	20	84	9	59	21	11	11	55	1.66
32981128--32981334	27	7.7	27	82	3	238	42	17	12	27	1.86
32981126--32981362	27	8.8	27	74	9	144	42	17	12	27	1.85
32981126--32981376	54	4.6	54	79	7	244	42	17	12	27	1.85
32981126--32981362	81	2.9	79	84	3	278	42	17	12	27	1.85
32981152--32981376	27	8.3	28	76	9	168	42	17	12	27	1.86
32988516--32988544	13	2.1	14	93	6	51	51	20	6	20	1.70
32990420--32990453	17	1.9	18	94	5	61	20	11	8	58	1.59
32991409--32991447	15	2.4	16	83	12	53	61	2	7	28	1.37
32993304--32993514	44	4.6	44	66	20	108	27	21	18	32	1.97
32993285--32993704	142	3.0	142	95	0	732	27	22	17	32	1.96
32993485--32993704	44	4.8	44	68	16	140	29	22	17	30	1.97
33008317--33008364	20	2.4	20	85	0	60	16	10	35	37	1.83
33011872--33011900	8	3.6	8	100	0	58	86	0	13	0	0.58
33015117--33015165	10	4.9	10	78	9	55	28	16	30	24	1.96
33015109--33015165	20	2.9	19	87	7	87	29	17	29	22	1.97
33020578--33020607	15	2.0	15	93	0	51	43	36	6	13	1.70
33024763--33024828	25	2.6	25	92	0	105	28	21	15	34	1.93
33033200--33033249	20	2.5	20	96	0	91	26	18	30	26	1.98
33033213--33033255	20	2.2	20	91	0	68	27	23	23	25	2.00
33035739--33035784	24	1.9	24	95	0	83	30	13	19	36	1.90
33040955--33041030	38	2.0	39	94	2	136	44	21	7	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33041323--33041356	17	1.9	18	88	5	52	41	17	5	35	1.74
33045276--33045330	28	2.0	28	100	0	110	43	7	14	34	1.73
33048513--33048550	19	2.0	19	100	0	76	47	15	10	26	1.78
33049031--33049117	39	2.3	38	84	6	113	50	8	3	37	1.49
33064057--33064324	137	2.0	137	87	1	394	18	22	26	32	1.97
33070001--33070185	79	2.3	81	83	7	227	24	22	27	24	2.00
33070002--33070185	40	4.6	40	82	9	207	25	22	27	24	2.00
33070054--33070218	79	2.1	79	83	6	201	26	21	27	24	1.99
33072197--33072254	16	3.6	16	75	9	55	20	15	12	51	1.75
33073869--33074093	40	5.7	40	86	5	296	25	28	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222