genome.fa.s15.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  98  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30927347--30927484	29	4.8	29	74	8	131	18	0	34	46	1.55
30927284--30927488	7	28.7	7	71	10	103	19	1	31	47	1.59
30927397--30927487	36	2.5	37	83	3	114	17	0	31	50	1.46
30928138--30928200	20	3.1	20	77	11	74	50	0	4	44	1.23
30928141--30928200	10	5.8	10	78	11	59	48	0	5	46	1.24
30929029--30929058	13	2.3	13	94	0	51	23	16	20	40	1.91
30929523--30929553	13	2.5	12	90	10	53	35	22	6	35	1.80
30929523--30929587	26	2.5	25	75	2	58	41	21	7	29	1.81
30932819--30933058	43	5.6	43	83	4	254	24	16	26	32	1.96
30932880--30933058	85	2.1	87	87	2	254	25	18	26	29	1.98
30932880--30933078	85	2.3	86	82	1	220	27	19	25	28	1.98
30933225--30933269	20	2.2	20	100	0	90	51	4	24	20	1.66
30934763--30934938	9	18.8	9	68	23	89	32	1	2	63	1.17
30934825--30934874	21	2.4	22	84	15	63	42	0	2	56	1.11
30934845--30934937	28	3.3	27	76	13	89	38	2	1	58	1.17
30934837--30934937	19	5.3	18	75	18	82	37	1	0	59	1.15
30935511--30935566	22	2.5	22	91	0	94	51	5	3	39	1.42
30942053--30942124	37	1.9	37	100	0	144	30	19	19	30	1.96
30942622--30942699	27	2.8	26	76	5	66	32	29	19	19	1.96
30947304--30947482	85	2.1	85	98	0	349	37	8	27	26	1.85
30948685--30949475	47	16.7	47	91	2	1246	32	10	30	26	1.90
30949347--30949468	22	5.3	22	62	21	61	33	11	29	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30951367--30951515	27	5.5	27	84	4	149	28	28	15	26	1.96
30951367--30951515	55	2.7	53	81	8	156	28	28	15	26	1.96
30963875--30963913	18	2.2	18	100	0	78	25	28	5	41	1.77
30964180--30964499	28	11.4	28	80	5	317	35	22	16	25	1.95
30979965--30980053	38	2.3	39	81	13	103	31	20	23	24	1.98
30982730--30982818	38	2.3	39	81	13	103	31	20	23	24	1.98
30985674--30985726	27	2.0	27	96	0	97	33	22	15	28	1.94
30987164--30987204	21	2.0	21	90	4	66	14	24	34	26	1.94
30987170--30987212	20	2.1	21	83	12	54	23	20	32	23	1.98
30987619--30987671	15	3.4	16	82	7	65	30	13	15	41	1.85
30987811--30987850	18	2.2	19	86	4	55	30	15	2	52	1.55
30994406--30994630	119	1.9	120	82	8	289	25	26	21	26	2.00
30994406--30994630	40	5.7	40	82	8	262	25	26	21	26	2.00
31006288--31006324	18	2.0	19	89	5	58	51	0	43	5	1.24
31007196--31007257	22	2.8	22	69	13	56	12	3	46	37	1.58
31008882--31008978	35	2.8	35	80	0	113	40	14	17	27	1.89
31013017--31013083	31	2.1	32	81	13	77	26	11	29	31	1.92
31015099--31015366	40	6.7	40	95	0	455	21	26	20	30	1.98
31026646--31026689	22	2.0	22	90	0	70	22	36	4	36	1.75
31027498--31027531	16	2.1	17	88	5	52	50	0	5	44	1.26
31029195--31029263	35	1.9	37	85	8	99	27	0	7	65	1.19
31029609--31029644	18	1.9	19	94	5	65	52	0	2	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31029693--31029718	13	2.0	13	100	0	52	69	0	7	23	1.14
31029949--31030057	10	11.4	10	70	15	61	28	4	0	66	1.18
31029935--31030041	29	3.8	28	79	7	99	30	4	0	63	1.21
31029898--31030045	57	2.5	58	76	10	149	31	6	1	60	1.31
31029960--31030057	39	2.5	40	80	6	110	28	5	1	65	1.20
31029970--31030057	19	4.5	19	84	7	97	28	4	1	65	1.19
31030100--31030139	20	2.0	20	95	0	71	47	5	0	47	1.24
31030142--31030344	89	2.3	87	81	9	241	32	8	21	37	1.84
31031670--31031753	32	2.6	33	71	5	82	44	4	2	48	1.36
31034878--31034921	22	2.0	22	86	0	61	43	2	0	54	1.12
31036698--31036741	22	2.0	22	95	0	79	43	18	20	18	1.89
31038144--31038203	23	2.6	22	69	7	57	66	8	10	15	1.43
31045158--31045190	16	2.1	16	94	0	57	21	0	0	78	0.75
31045470--31045496	3	9.0	3	100	0	54	66	0	0	33	0.92
31045989--31046017	13	2.2	13	100	0	58	48	13	0	37	1.43
31048154--31048194	19	2.2	19	86	0	55	24	34	26	14	1.94
31050148--31050256	33	3.3	33	89	5	175	42	33	9	15	1.79
31056055--31056287	114	2.0	114	94	0	403	30	21	15	33	1.93
31057226--31057274	25	1.9	27	84	12	68	34	12	16	36	1.86
31061396--31061451	25	2.4	22	78	16	67	23	12	48	16	1.80
31061402--31061455	25	2.2	25	93	0	90	22	12	48	16	1.80
31062952--31063090	27	5.2	26	87	5	172	39	16	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31062952--31063090	54	2.6	54	86	3	192	39	16	15	28	1.89
31067484--31067517	17	1.9	18	88	5	52	26	11	8	52	1.67
31076331--31076538	27	7.7	27	85	6	237	20	18	18	42	1.89
31076331--31076538	54	3.9	54	87	5	278	20	18	18	42	1.89
31083334--31083534	27	7.5	27	82	1	226	17	18	19	44	1.87
31083334--31083534	54	3.8	54	87	2	271	17	18	19	44	1.87
31083334--31083530	107	1.8	107	90	0	313	17	17	19	45	1.85
31091064--31091100	18	2.1	18	100	0	74	27	10	32	29	1.90
31092693--31092819	20	6.3	20	74	4	121	11	31	21	36	1.88
31092696--31092814	60	2.0	60	83	3	150	10	32	21	35	1.87
31095055--31095240	50	3.7	50	81	7	202	27	22	26	23	2.00
31098074--31098128	25	2.2	25	80	6	67	20	34	12	32	1.90
31100979--31101007	14	2.1	14	100	0	58	58	0	6	34	1.25
31109819--31109874	25	2.2	25	83	0	76	44	16	17	21	1.86
31109830--31109878	25	2.0	25	95	0	89	40	18	18	22	1.91
31110783--31111118	50	6.6	50	79	6	286	25	27	18	28	1.98
31110782--31111164	50	7.6	50	79	5	254	25	27	18	28	1.98
31115203--31115320	49	2.4	49	78	7	123	29	19	27	23	1.98
31115532--31115570	20	2.0	20	90	10	62	56	5	23	15	1.59
31118917--31119061	50	2.9	50	86	2	193	28	20	28	22	1.99
31119025--31119159	49	2.8	49	88	0	198	34	19	20	25	1.96
31119349--31119388	20	2.0	20	90	9	64	55	5	25	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31126605--31126733	49	2.6	51	79	6	147	27	21	29	20	1.98
31126990--31127028	20	2.0	20	90	10	62	56	5	23	15	1.59
31129952--31130128	54	3.3	54	89	1	248	40	15	12	31	1.85
31130017--31130109	19	5.1	19	68	12	68	44	16	11	27	1.82
31134937--31135044	25	4.3	25	87	0	153	25	28	14	31	1.95
31143575--31143655	41	2.0	41	100	0	162	32	17	2	48	1.60
31151537--31151574	18	2.2	18	85	4	51	10	23	47	18	1.79
31159937--31159984	22	2.2	21	82	14	53	50	4	10	35	1.56
31166465--31166818	40	8.8	40	93	2	582	23	28	21	26	1.99
31166465--31166818	122	2.9	122	94	2	615	23	28	21	26	1.99
31166465--31166818	82	4.4	80	95	1	582	23	28	21	26	1.99
31175043--31175396	40	8.8	40	93	2	582	23	28	21	26	1.99
31175043--31175396	122	2.9	122	94	2	615	23	28	21	26	1.99
31175043--31175396	82	4.4	80	95	1	582	23	28	21	26	1.99
31177871--31177945	23	3.3	23	90	0	114	14	20	24	41	1.89
31184772--31184849	20	3.9	20	77	9	79	14	29	15	41	1.86
31191942--31192040	24	4.1	24	85	0	135	42	25	16	16	1.88
31194873--31194936	34	1.9	33	84	6	85	20	23	23	32	1.98
31194974--31195016	23	1.9	23	90	4	70	25	51	4	18	1.66
31195222--31195396	27	6.5	27	80	2	190	36	14	15	33	1.88
31195222--31195394	54	3.2	54	89	0	256	36	14	15	33	1.88
31195489--31195562	23	3.4	21	82	8	60	22	31	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31195497--31195571	23	3.3	23	90	0	114	22	30	29	17	1.97
31196450--31196502	26	2.0	26	81	0	61	32	18	30	18	1.96
31196994--31197358	27	13.6	27	80	4	353	22	21	19	36	1.95
31196990--31197281	134	2.2	133	82	6	340	22	21	19	35	1.96
31196974--31197334	161	2.3	159	81	5	415	22	22	19	35	1.96
31205133--31205195	28	2.2	28	82	0	72	33	23	22	20	1.97
31205141--31205197	28	2.0	28	86	0	78	31	24	24	19	1.98
31205350--31205412	22	2.8	22	76	11	67	42	17	22	17	1.89
31205404--31205669	32	8.4	31	73	5	151	38	20	19	21	1.94
31205405--31205669	64	4.2	63	75	8	198	38	20	19	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222