Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  159  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51240256--51240337
24
3.4
24
81
6
103
43
1
35
19
1.59
51243179--51243207
12
2.4
12
100
0
58
58
10
10
20
1.60
51255143--51255206
28
2.5
26
82
14
71
17
15
3
64
1.42
51259922--51260379
87
5.4
87
76
11
455
28
22
23
25
1.99
51260009--51260549
127
4.3
127
95
0
965
27
21
23
26
1.99
51260009--51260549
255
2.1
254
95
0
965
27
21
23
26
1.99
51262957--51262986
3
10.0
3
100
0
60
66
0
0
33
0.92
51267082--51267145
25
2.6
25
85
5
85
25
15
6
53
1.65
51269184--51269327
44
3.3
44
87
1
191
31
15
25
27
1.95
51269553--51269734
50
3.7
49
73
11
172
32
19
23
24
1.97
51269559--51269770
100
2.1
99
85
6
277
34
18
20
25
1.96
51269862--51270479
44
14.5
43
71
12
391
30
22
21
26
1.98
51269767--51270504
125
5.8
129
89
2
1070
31
21
21
26
1.98
51271856--51271886
3
10.3
3
100
0
62
32
0
0
67
0.91
51271996--51272070
28
2.6
28
77
12
73
32
5
1
61
1.27
51274375--51274442
33
2.0
34
86
8
95
48
14
7
29
1.71
51275843--51275867
2
12.5
2
100
0
50
52
0
0
48
1.00
51276394--51276425
16
1.9
17
93
6
57
62
0
0
37
0.95
51285905--51285954
17
2.9
18
79
8
59
18
2
4
76
1.04
51285917--51285989
21
3.5
20
78
12
58
15
0
8
76
1.00
51289075--51289115
5
7.6
5
84
15
55
41
53
0
4
1.22
51289219--51289285
9
7.4
9
77
12
66
28
10
20
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51289219--51289285
18
3.7
18
88
6
82
28
10
20
40
1.86
51289219--51289285
27
2.5
27
85
4
82
28
10
20
40
1.86
51291608--51291680
31
2.4
29
81
4
83
24
10
15
49
1.76
51292090--51292130
17
2.6
16
82
14
50
75
0
7
17
1.02
51292082--51292134
26
2.1
25
82
10
63
75
0
5
18
0.99
51292390--51292424
16
2.2
16
100
0
70
37
0
5
57
1.23
51304232--51304261
15
2.0
15
93
0
51
30
6
20
43
1.77
51306948--51307053
38
2.8
38
84
8
130
29
9
4
56
1.51
51310193--51310233
21
2.0
21
85
0
55
19
0
34
46
1.50
51310371--51310409
15
2.5
16
84
16
55
61
0
2
35
1.10
51313368--51313536
20
8.6
20
71
13
120
47
6
5
40
1.52
51313379--51313570
57
3.3
57
89
2
276
46
6
5
41
1.52
51313460--51313698
94
2.6
91
79
10
265
44
7
5
42
1.55
51313552--51313767
57
3.6
58
74
14
188
43
9
4
42
1.55
51313609--51313714
37
3.1
35
75
23
116
45
11
2
40
1.55
51313547--51313782
124
1.9
124
85
6
327
44
9
4
41
1.57
51313804--51314135
9
39.3
9
66
18
153
45
20
2
31
1.64
51313801--51313928
26
4.9
26
79
5
159
44
20
0
34
1.57
51313781--51313948
79
2.1
79
96
0
309
44
21
0
33
1.57
51313844--51313881
16
2.4
16
90
0
58
44
23
0
31
1.54
51313917--51313947
16
1.9
16
93
0
53
32
22
0
45
1.53
51313993--51314131
16
9.0
16
65
19
71
47
20
2
29
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51313967--51314131
41
4.0
41
79
3
154
48
20
3
28
1.64
51314008--51314063
25
2.2
25
90
0
85
44
21
3
30
1.69
51314052--51314143
25
3.7
25
80
2
87
46
18
2
32
1.61
51316998--51317310
43
7.3
42
85
5
389
19
17
31
30
1.95
51316998--51317310
86
3.6
86
88
3
443
19
17
31
30
1.95
51320384--51320430
3
15.7
3
100
0
94
68
0
31
0
0.90
51322710--51322740
14
2.2
14
100
0
62
29
29
12
29
1.94
51324005--51324061
6
9.5
6
75
7
53
75
8
1
14
1.11
51332727--51332805
21
3.6
21
72
11
68
21
7
8
62
1.50
51340885--51340923
20
2.0
20
85
10
53
43
12
7
35
1.72
51344198--51344238
19
2.2
19
91
8
66
12
9
0
78
0.98
51344217--51344282
27
2.3
29
82
12
82
13
6
6
74
1.20
51352205--51352270
27
2.4
27
89
0
105
34
18
10
36
1.85
51352551--51352614
34
1.9
32
93
6
110
32
23
21
21
1.98
51359679--51359855
27
6.6
27
93
3
254
31
19
15
33
1.93
51362085--51362137
24
2.1
26
86
10
74
52
5
0
41
1.25
51363536--51364241
353
2.0
353
99
0
1394
31
19
21
27
1.98
51367170--51367266
9
10.2
9
72
12
61
32
0
0
67
0.91
51367174--51367257
30
2.8
30
85
7
100
34
0
0
65
0.93
51367176--51367256
29
2.8
27
83
12
99
34
0
0
65
0.93
51367224--51367289
11
6.4
11
75
21
54
37
1
0
60
1.06
51367194--51367298
39
2.6
40
89
6
158
37
0
0
61
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51367167--51367298
39
3.4
38
81
13
144
34
0
0
64
0.99
51367708--51367806
49
2.0
49
90
5
157
30
13
18
38
1.88
51370325--51370405
27
3.0
27
74
13
76
28
23
7
40
1.81
51370364--51370442
27
3.0
26
73
12
79
22
22
10
44
1.83
51371190--51371219
15
1.9
16
93
6
53
56
3
0
40
1.16
51371876--51371948
30
2.4
30
74
0
74
34
6
15
43
1.73
51375520--51375560
20
2.0
20
90
0
64
34
19
14
31
1.92
51378393--51378486
34
2.8
34
87
6
131
39
0
17
43
1.49
51378580--51378972
126
3.1
126
86
1
504
36
16
16
30
1.92
51382489--51382538
18
2.8
18
96
0
91
48
6
22
24
1.73
51385662--51385700
20
1.9
21
84
5
53
66
2
2
28
1.18
51385632--51385706
30
2.4
31
74
12
73
65
2
2
29
1.20
51387244--51387315
27
2.7
26
77
14
67
56
1
5
36
1.31
51388197--51388221
7
3.6
7
100
0
50
88
0
12
0
0.53
51389345--51389380
16
2.2
16
90
0
54
58
0
2
38
1.13
51389907--51389949
20
2.0
22
86
13
63
58
4
0
37
1.19
51395291--51395371
38
2.1
38
83
0
99
44
23
14
17
1.86
51395025--51395858
339
2.4
338
89
4
1266
43
15
12
28
1.83
51397210--51397387
27
6.6
27
84
3
205
29
28
15
26
1.96
51397231--51397386
82
1.9
81
88
3
233
29
28
15
26
1.96
51405177--51405354
27
6.6
27
84
3
205
29
28
15
26
1.96
51405198--51405353
82
1.9
81
88
3
233
29
28
15
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51413107--51413284
27
6.6
27
84
3
205
29
28
15
26
1.96
51413128--51413283
82
1.9
81
88
3
233
29
28
15
26
1.96
51425122--51425181
28
2.1
28
81
6
68
18
20
38
23
1.93
51428736--51428800
14
4.4
14
84
9
85
66
0
10
23
1.23
51428744--51428801
8
7.8
8
79
14
70
68
0
8
22
1.16
51428736--51428801
22
3.0
22
81
16
82
66
0
10
22
1.22
51428744--51428803
30
2.0
30
96
0
111
68
0
8
23
1.16
51437140--51437191
21
2.4
21
78
15
61
59
1
5
32
1.32
51456735--51456928
103
1.9
101
84
6
257
30
17
24
27
1.97
51458306--51458333
9
3.1
9
100
0
56
46
32
0
21
1.52
51458997--51459061
21
3.1
21
84
2
87
33
24
24
16
1.96
51460245--51460282
3
12.7
3
100
0
76
65
0
0
34
0.93
51460417--51460458
11
3.5
11
82
17
57
54
2
0
42
1.13
51460416--51460451
14
2.6
14
90
0
63
55
2
0
41
1.14
51466474--51466538
21
3.1
21
84
2
87
33
24
24
16
1.96
51467723--51467757
3
11.7
3
93
0
61
62
2
0
34
1.10
51467892--51467933
11
3.5
11
82
17
57
54
2
0
42
1.13
51467891--51467926
14
2.6
14
90
0
63
55
2
0
41
1.14
51469874--51469976
30
3.5
30
83
1
118
36
20
2
39
1.68
51470310--51470350
20
2.0
21
85
9
57
70
0
26
2
0.99
51470339--51470382
23
2.0
21
86
8
61
70
0
29
0
0.88
51470333--51470385
19
2.8
19
80
5
63
69
0
30
0
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51470468--51470507
21
2.0
19
90
9
62
70
0
30
0
0.88
51470469--51470509
18
2.5
17
85
14
59
73
0
26
0
0.84
51470472--51470576
46
2.3
45
79
12
110
74
0
22
2
0.95
51470516--51470570
9
5.6
10
73
18
53
76
0
21
1
0.88
51470517--51470570
27
2.0
27
85
7
74
77
0
20
1
0.86
51470529--51470570
13
3.2
13
83
6
57
80
0
19
0
0.70
51470469--51470552
18
4.5
17
71
21
53
72
0
25
2
0.96
51471130--51471177
24
2.0
25
84
12
64
25
0
4
70
1.04
51480801--51480932
50
2.6
50
76
7
133
30
22
28
18
1.98
51480865--51480995
49
2.6
50
83
3
149
29
21
25
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222