genome.fa.s15.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  126  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40898296--40898417	46	2.7	46	94	0	208	21	18	27	32	1.97
40901872--40902063	98	2.0	97	87	1	276	38	19	14	28	1.91
40905376--40905418	23	2.0	22	86	9	61	41	39	9	9	1.69
40909081--40909112	11	2.9	11	90	0	55	65	0	0	34	0.93
40909221--40909271	13	3.9	13	77	10	59	60	1	0	37	1.08
40910819--40910852	16	2.1	16	100	0	68	35	17	17	29	1.93
40913353--40913507	51	3.0	51	93	0	265	35	27	8	28	1.86
40913611--40913723	33	3.4	32	74	4	100	22	47	3	26	1.67
40920199--40920275	22	3.4	22	67	19	68	35	2	25	36	1.70
40920194--40920288	46	2.1	46	100	0	190	33	2	23	41	1.66
40924716--40924810	46	2.1	46	97	0	181	33	2	22	42	1.65
40924742--40924813	22	3.2	22	61	7	54	31	1	22	44	1.61
40925258--40925594	171	2.0	170	84	2	444	44	19	10	25	1.83
40932659--40932718	16	3.8	16	93	0	102	28	0	31	40	1.57
40932659--40932726	32	2.1	32	91	5	111	29	0	30	39	1.57
40932659--40932726	16	4.2	16	83	7	84	29	0	30	39	1.57
40932856--40933165	157	2.0	157	94	0	548	43	3	5	47	1.42
40932919--40933168	76	3.1	81	63	24	186	46	4	3	45	1.39
40932902--40933223	157	2.0	155	81	5	349	46	4	4	44	1.44
40934044--40934073	13	2.3	13	100	0	60	60	13	6	20	1.55
40937058--40937316	114	2.3	115	81	4	290	27	19	23	29	1.98
40937510--40937625	55	2.2	53	84	9	146	18	0	33	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40937510--40937653	7	21.0	7	74	8	75	19	0	32	47	1.55
40938366--40938450	40	2.1	41	86	4	120	50	11	15	22	1.76
40940116--40940167	25	2.2	24	86	10	72	44	17	0	38	1.49
40940678--40941135	220	2.0	229	88	5	682	31	6	10	51	1.62
40941154--40941211	19	3.1	19	85	5	91	44	12	3	39	1.58
40941151--40941499	9	36.2	9	67	18	125	44	16	1	36	1.57
40941248--40941489	40	6.3	38	72	17	164	45	18	0	35	1.53
40941313--40941535	58	3.8	58	85	5	299	46	18	0	34	1.53
40941427--40941467	21	2.0	21	90	0	64	43	12	0	43	1.41
40941345--40941536	61	3.1	61	78	14	200	45	19	0	34	1.54
40943244--40943279	12	3.0	12	95	0	63	33	5	25	36	1.79
40943265--40943308	18	2.4	18	96	0	79	43	2	25	29	1.67
40944202--40944255	16	3.4	16	86	0	81	35	3	35	25	1.74
40944234--40944324	45	2.0	44	87	2	128	31	5	28	34	1.80
40944476--40944655	51	3.2	51	66	24	135	50	5	1	43	1.31
40944598--40944639	15	2.9	15	82	10	52	52	0	0	47	1.00
40944472--40944884	120	3.4	120	95	0	729	49	5	1	43	1.36
40944708--40944759	15	3.6	15	80	12	56	53	1	0	44	1.11
40944866--40945033	47	3.7	46	71	12	139	47	3	3	45	1.37
40944881--40945107	91	2.5	91	85	5	289	47	3	3	45	1.37
40944925--40945073	44	3.3	42	69	22	106	48	2	2	45	1.30
40948169--40948244	33	2.3	33	95	0	134	36	5	14	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40948287--40948373	37	2.4	37	94	0	147	35	8	14	41	1.76
40949540--40949679	69	2.0	69	90	0	217	41	24	7	26	1.82
40951037--40951159	36	3.3	36	86	4	147	54	13	26	5	1.60
40953209--40953258	26	1.9	26	88	8	75	26	14	18	42	1.87
40954615--40954755	43	3.3	42	87	7	196	21	13	28	36	1.92
40958930--40959006	19	4.0	19	74	1	73	22	20	19	37	1.94
40959932--40960014	28	3.0	28	80	7	105	44	15	8	31	1.76
40960349--40960375	14	1.9	14	100	0	54	29	14	25	29	1.95
40963129--40963294	55	3.0	54	79	10	185	26	9	24	39	1.86
40969058--40969116	25	2.3	26	80	8	68	74	3	3	18	1.10
40969176--40969211	16	2.2	16	100	0	72	66	16	11	5	1.40
40972322--40972410	28	3.2	28	90	0	142	31	22	23	22	1.98
40972731--40972850	56	2.1	56	100	0	240	45	9	22	22	1.80
40975498--40975619	22	5.3	22	63	21	61	25	28	11	34	1.91
40975470--40975726	47	5.4	47	87	3	347	26	29	9	33	1.88
40978498--40978722	40	5.7	40	86	5	296	24	22	28	25	2.00
40978498--40978755	119	2.2	119	81	6	283	25	22	27	24	2.00
40986440--40986664	40	5.7	40	84	5	278	24	21	28	25	1.99
40986440--40986697	119	2.2	119	80	6	274	25	21	27	25	1.99
40988126--40988212	26	3.3	26	82	7	104	33	18	25	22	1.97
40988162--40988220	27	2.2	27	82	8	68	33	20	22	23	1.97
40988408--40988747	80	4.2	81	80	7	329	20	15	23	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40988405--40988747	27	12.8	27	79	4	275	20	15	23	40	1.90
40988515--40988747	53	4.4	53	81	4	202	20	14	24	40	1.90
40989436--40989482	24	1.9	24	86	4	67	25	34	0	40	1.56
40990886--40991078	105	1.9	100	80	5	224	30	23	12	33	1.92
40998221--40998284	18	3.5	17	73	14	56	40	6	18	34	1.76
41006248--41006287	21	1.9	21	90	10	64	25	22	25	27	2.00
41006246--41006293	21	2.3	21	78	7	62	20	27	25	27	1.99
41006399--41006451	21	2.5	21	84	6	63	15	26	28	30	1.96
41009234--41009319	30	2.9	30	84	5	111	26	9	38	25	1.86
41009206--41009319	60	1.9	60	83	3	149	28	8	35	28	1.87
41011535--41011581	21	2.2	21	88	11	78	19	21	29	29	1.97
41026148--41026313	22	7.5	22	74	8	140	31	18	26	23	1.97
41026148--41026313	44	3.8	44	85	4	210	31	18	26	23	1.97
41026149--41026290	66	2.1	67	80	3	162	31	17	27	23	1.97
41037711--41037754	19	2.3	20	84	7	56	52	4	6	36	1.49
41037721--41037759	20	2.0	19	90	5	60	53	2	2	41	1.28
41037749--41037796	26	1.9	26	87	8	73	47	2	4	45	1.33
41038767--41038905	40	3.6	38	76	11	138	25	17	25	30	1.97
41039257--41039313	18	3.2	19	75	12	66	33	5	7	54	1.50
41045159--41045211	27	2.0	27	85	7	74	41	15	13	30	1.85
41045169--41045240	27	2.7	27	82	2	92	33	18	18	30	1.94
41055690--41056004	156	2.0	156	89	0	486	31	26	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41060675--41060730	16	3.5	16	85	0	76	30	28	7	33	1.84
41068326--41068425	37	2.7	35	84	4	110	32	9	7	52	1.60
41071099--41071189	44	2.1	44	87	4	130	48	10	13	27	1.75
41083769--41083838	30	2.3	30	95	0	122	51	7	1	40	1.38
41083915--41083950	19	1.9	19	88	5	56	50	8	5	36	1.56
41085125--41085179	21	2.5	23	76	11	69	12	18	27	41	1.86
41085138--41085184	21	2.2	21	88	0	67	17	21	29	31	1.96
41097072--41097133	26	2.4	26	91	0	97	40	14	11	33	1.82
41103893--41103952	27	2.2	27	93	0	102	38	18	23	20	1.93
41104379--41105965	533	3.0	533	94	0	2724	35	15	22	26	1.94
41110428--41110505	38	2.1	38	92	0	129	24	21	16	37	1.94
41125489--41125576	39	2.3	39	97	0	167	18	2	52	27	1.57
41125489--41125616	45	3.0	44	85	8	158	19	3	51	25	1.61
41125489--41125616	39	3.1	39	78	12	139	19	3	51	25	1.61
41128157--41128359	82	2.5	82	90	1	318	28	6	16	49	1.70
41129699--41129909	115	1.9	112	89	5	325	46	16	9	27	1.78
41130370--41130408	17	2.2	18	86	9	53	28	2	2	66	1.18
41132573--41132610	17	2.4	16	79	12	51	76	0	0	23	0.79
41132552--41132612	27	2.3	26	83	13	79	72	0	1	26	0.94
41132949--41133040	16	5.4	16	72	12	67	32	4	1	61	1.22
41132961--41133041	18	4.7	17	70	8	56	32	4	1	61	1.25
41133130--41133173	19	2.4	19	84	3	54	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41135417--41135631	109	2.0	108	84	2	279	32	21	14	31	1.93
41140679--41140718	17	2.4	17	86	0	53	25	17	10	47	1.78
41141148--41141310	55	3.0	54	82	3	184	22	22	30	25	1.99
41143372--41143402	16	1.9	16	100	0	62	58	19	0	22	1.40
41143682--41143782	25	4.0	25	80	0	103	29	22	22	24	1.99
41155677--41156419	370	2.0	370	85	3	1012	35	14	18	31	1.91
41157026--41157086	26	2.4	25	86	2	77	45	13	9	31	1.75
41158374--41158457	26	3.2	26	75	6	80	32	33	14	20	1.92
41160222--41160312	27	3.4	27	85	8	114	19	16	20	42	1.89
41162629--41162697	31	2.3	31	82	12	81	47	17	8	26	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222