genome.fa.s15.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  152  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49017339--49017371	14	2.4	14	90	5	50	66	9	9	15	1.43
49025773--49025820	16	3.1	15	90	6	69	64	2	2	31	1.16
49025769--49025820	8	6.5	8	82	8	61	65	1	1	30	1.14
49025768--49025824	24	2.4	24	79	5	71	64	1	3	29	1.20
49025931--49025984	23	2.5	22	75	13	60	57	5	5	31	1.45
49025947--49026032	25	3.7	24	79	10	81	55	5	6	31	1.50
49026021--49026085	28	2.5	25	82	7	67	61	3	4	30	1.31
49026051--49026180	22	5.5	23	66	18	63	58	2	3	35	1.29
49025962--49026180	25	9.0	25	73	12	127	57	3	5	33	1.39
49026042--49026095	13	4.2	13	73	17	51	64	0	3	31	1.11
49038798--49038833	12	3.0	12	95	0	63	41	5	25	27	1.77
49040403--49040450	16	3.1	15	90	6	69	64	2	2	31	1.16
49040399--49040450	8	6.5	8	82	8	61	65	1	1	30	1.14
49040398--49040454	24	2.4	24	79	5	71	64	1	3	29	1.20
49040563--49040616	23	2.5	22	75	13	60	57	5	5	31	1.45
49040579--49040664	25	3.7	24	79	10	81	55	5	6	31	1.50
49040688--49040821	25	5.6	25	71	11	93	58	2	3	35	1.28
49041304--49041468	60	2.8	60	89	1	233	22	3	47	26	1.67
49041304--49041466	30	5.4	29	86	2	200	22	3	47	26	1.67
49042149--49042311	46	3.6	46	77	6	179	26	3	19	49	1.65
49042149--49042261	44	2.5	45	81	5	140	28	4	19	47	1.68
49042307--49042413	29	3.7	28	83	3	117	27	17	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49042309--49042508	29	6.9	28	73	7	116	28	16	18	37	1.92
49044930--49044979	20	2.5	21	81	12	54	32	8	8	52	1.60
49049994--49050036	22	2.0	22	90	0	68	37	20	25	16	1.93
49051152--49051229	5	15.6	5	75	17	65	55	2	1	41	1.22
49051147--49051188	8	5.0	8	83	11	57	57	0	0	42	0.99
49051505--49051542	18	2.0	19	85	10	51	42	15	0	42	1.47
49068230--49068261	12	2.6	13	85	14	50	71	0	0	28	0.86
49068531--49068586	22	2.6	21	86	11	69	71	3	0	25	1.02
49068531--49068587	29	2.0	29	86	6	80	71	3	0	24	1.01
49068536--49068589	8	7.0	8	77	12	51	70	3	0	25	1.04
49069453--49069485	17	1.9	17	100	0	66	42	6	27	24	1.78
49069635--49069659	2	12.5	2	100	0	50	0	48	0	52	1.00
49072598--49072630	17	1.9	17	93	0	57	45	6	24	24	1.75
49072778--49072830	2	26.5	2	100	0	106	0	49	0	50	1.00
49074278--49074382	28	3.8	28	77	5	104	60	3	12	22	1.47
49074245--49074382	28	4.9	28	74	7	100	57	4	14	23	1.55
49074247--49074384	56	2.5	56	79	7	172	57	5	14	23	1.57
49075402--49075443	21	2.0	21	81	9	50	35	9	2	52	1.47
49077575--49077684	45	2.5	44	79	4	121	26	25	16	31	1.96
49079048--49079077	8	3.8	8	100	0	60	53	10	0	36	1.35
49082153--49082181	14	2.1	14	100	0	58	58	6	0	34	1.25
49085267--49085389	35	3.5	35	82	2	140	26	17	29	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49087168--49087242	11	6.8	11	71	24	52	52	2	2	42	1.29
49087189--49087242	18	3.0	18	75	8	56	50	3	3	42	1.38
49088374--49088426	21	2.5	21	78	0	61	28	22	28	20	1.99
49088416--49088470	23	2.4	23	87	0	83	36	21	18	23	1.95
49090454--49091002	280	2.0	271	87	4	796	24	20	18	36	1.94
49093880--49094106	96	2.4	92	91	2	287	32	8	30	28	1.87
49093880--49094106	47	4.8	47	92	2	364	32	8	30	28	1.87
49094225--49094303	37	2.1	37	90	0	122	24	18	31	25	1.98
49095900--49095931	15	2.1	15	94	0	55	68	9	6	15	1.36
49100158--49100200	21	2.0	21	95	0	77	27	37	18	16	1.92
49100708--49102009	4	324.8	4	87	1	1685	25	5	24	43	1.75
49105243--49105320	38	2.1	38	100	0	156	30	23	7	38	1.83
49116349--49116381	16	2.1	16	88	5	50	21	3	18	57	1.53
49117316--49117353	20	1.9	20	84	10	51	42	7	2	47	1.46
49122293--49122334	20	2.2	20	87	8	61	76	2	2	19	1.01
49134684--49134915	95	2.5	95	85	2	299	31	19	19	29	1.96
49145402--49145434	7	4.6	7	92	7	57	0	12	3	84	0.72
49145403--49145431	15	1.9	15	100	0	58	0	13	3	82	0.79
49148398--49148449	15	3.6	15	80	12	56	44	0	1	53	1.11
49148274--49148570	120	2.5	120	92	2	481	42	3	4	49	1.39
49148784--49148819	16	2.2	16	100	0	72	38	36	0	25	1.56
49156880--49156909	15	2.0	15	93	0	51	70	0	13	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49159402--49159427	5	5.2	5	100	0	52	23	19	19	38	1.93
49166244--49166280	19	1.9	19	94	0	65	27	21	24	27	1.99
49182347--49182397	23	2.2	23	89	6	77	41	19	9	29	1.84
49185556--49185589	9	3.7	9	88	4	50	23	0	8	67	1.18
49185621--49185659	17	2.2	18	86	9	53	28	2	2	66	1.18
49185732--49185790	30	2.0	30	96	0	109	22	22	28	27	1.99
49185878--49185932	13	3.9	13	82	17	74	40	45	0	14	1.45
49185868--49185932	30	2.1	31	94	2	114	40	43	0	16	1.49
49185913--49185990	38	2.0	39	95	2	140	51	28	2	17	1.59
49186122--49186196	37	2.0	37	92	0	123	36	5	14	44	1.68
49187954--49187986	17	1.9	17	88	11	50	42	6	12	39	1.67
49189214--49189244	15	2.1	15	100	0	62	22	32	6	38	1.80
49193748--49193779	5	6.4	5	96	0	55	0	18	3	78	0.89
49193748--49193821	15	5.1	15	80	12	59	0	25	6	67	1.15
49193766--49193821	17	3.5	17	79	18	75	0	28	8	62	1.25
49193766--49193823	30	1.9	30	96	0	107	0	29	8	62	1.25
49193771--49193823	13	3.8	13	81	18	63	0	30	9	60	1.28
49196086--49196284	41	5.0	40	70	17	130	43	1	4	51	1.27
49196109--49196156	18	2.8	18	74	22	50	43	0	0	56	0.99
49196255--49196299	15	2.8	16	83	10	56	48	0	0	51	1.00
49196256--49196296	16	2.6	16	88	7	57	46	0	0	53	1.00
49196413--49196517	44	2.5	40	73	15	104	31	28	4	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49196411--49196520	45	2.6	44	78	8	122	31	28	5	34	1.80
49196499--49196536	16	2.4	16	90	0	58	34	34	0	31	1.58
49196645--49196675	15	2.1	15	93	0	53	25	29	6	38	1.81
49199213--49199311	50	2.0	50	84	9	132	38	0	2	59	1.09
49199264--49199307	19	2.4	19	88	7	65	38	0	0	61	0.96
49204944--49204992	16	3.0	16	77	11	55	67	0	8	24	1.18
49222988--49223058	35	2.0	35	94	0	124	50	12	12	23	1.75
49227111--49227152	20	2.1	20	90	0	66	38	2	35	23	1.68
49238541--49238718	27	6.6	27	82	3	196	26	15	28	29	1.96
49238542--49238697	82	1.9	81	86	3	224	26	16	28	28	1.97
49238538--49238718	82	2.2	81	82	2	220	27	16	27	29	1.97
49241751--49241833	5	16.6	5	100	0	166	40	19	0	39	1.51
49244725--49245141	67	6.3	67	81	4	416	37	15	21	26	1.92
49244722--49245170	134	3.4	132	79	6	460	37	15	21	26	1.93
49254146--49254188	11	3.8	11	82	14	52	60	4	9	25	1.47
49254142--49254188	24	2.0	24	91	4	78	61	6	8	23	1.48
49254540--49254569	15	1.9	16	93	6	53	26	6	6	60	1.47
49259372--49259496	26	4.9	25	69	6	81	36	16	8	40	1.77
49264164--49264242	25	3.3	25	61	10	65	32	5	29	32	1.79
49264117--49264629	47	10.7	47	94	2	821	32	8	29	29	1.87
49264138--49264629	145	3.4	145	95	1	852	32	8	29	29	1.87
49264748--49264826	37	2.1	37	88	4	115	24	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49284669--49284856	61	3.1	61	67	17	165	43	2	5	47	1.41
49284604--49284891	120	2.4	120	90	2	470	43	1	4	49	1.34
49284613--49284795	59	3.1	58	67	17	149	42	2	3	51	1.32
49284670--49284853	59	3.1	59	65	21	139	43	2	5	47	1.42
49284837--49284871	18	2.0	17	88	5	52	45	0	0	54	0.99
49285018--49285122	44	2.5	40	76	15	113	31	29	4	34	1.78
49285016--49285124	45	2.6	44	81	8	129	31	29	5	33	1.80
49291104--49291243	40	3.6	39	73	11	126	22	23	17	35	1.95
49291144--49291428	36	7.7	36	64	15	123	23	23	19	32	1.97
49291101--49291439	76	4.5	75	83	5	400	24	23	19	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222