genome.fa.s15.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  147  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47459853--47460019	25	6.7	25	78	2	147	19	28	19	32	1.96
47459853--47460019	50	3.3	50	79	3	165	19	28	19	32	1.96
47459853--47460030	75	2.4	76	80	7	186	19	27	19	33	1.96
47459959--47460055	25	3.9	25	80	8	92	22	27	18	30	1.97
47464527--47464564	18	2.0	20	90	10	62	57	0	2	39	1.12
47464554--47464597	21	2.0	24	86	13	67	52	4	2	40	1.34
47464907--47464973	34	2.0	34	88	2	100	40	7	1	50	1.39
47469907--47470000	47	2.0	47	95	0	170	46	8	10	34	1.69
47470865--47470913	16	3.1	15	77	11	53	79	0	14	6	0.91
47478593--47478715	34	3.6	33	81	4	120	30	8	16	45	1.76
47480553--47480592	18	2.2	19	91	8	66	32	0	2	65	1.06
47483672--47483722	17	3.0	17	80	5	50	54	3	5	35	1.43
47483859--47483952	41	2.3	41	73	12	95	45	0	3	51	1.17
47487957--47487986	11	2.7	11	94	0	51	13	26	53	6	1.64
47488558--47488627	30	2.4	29	81	6	90	44	10	0	45	1.37
47489947--47490045	49	2.0	49	100	0	198	15	14	12	58	1.63
47490981--47491034	24	2.2	25	83	3	65	25	20	7	46	1.77
47493753--47493802	7	6.9	7	80	17	57	84	2	6	8	0.86
47494250--47494294	5	7.8	6	83	11	51	82	2	15	0	0.77
47494250--47494294	12	3.9	12	75	18	51	82	2	15	0	0.77
47494251--47494293	17	2.6	18	82	14	56	81	2	16	0	0.79
47495467--47495788	45	7.2	45	83	6	411	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495481--47495877	90	4.4	90	85	3	498	27	18	24	29	1.98
47495467--47495788	135	2.4	135	87	2	466	27	17	24	30	1.97
47495962--47496259	50	6.0	50	74	4	260	34	21	17	26	1.96
47495962--47496244	100	2.8	100	87	0	413	34	22	17	25	1.96
47496378--47496485	45	2.4	45	85	1	137	25	21	27	25	1.99
47498275--47498344	30	2.4	29	79	6	81	42	10	0	47	1.37
47498278--47498363	28	3.0	27	78	11	66	39	11	0	48	1.40
47504654--47504697	9	4.8	9	81	15	54	75	0	25	0	0.81
47504654--47504696	15	3.0	15	83	13	63	76	0	23	0	0.78
47505795--47505836	19	2.3	18	83	4	57	57	0	21	21	1.41
47508215--47508505	21	14.0	21	71	5	178	16	21	16	46	1.84
47508224--47508486	42	6.3	41	84	3	283	15	20	16	47	1.83
47508225--47508486	84	3.1	83	84	4	337	16	20	16	47	1.83
47510680--47510723	24	1.9	24	86	9	65	40	18	6	34	1.77
47510740--47510809	35	2.0	35	91	0	113	32	25	7	34	1.83
47515294--47515364	35	2.0	35	88	0	106	30	23	9	35	1.88
47524171--47524207	16	2.2	17	86	13	51	78	18	0	2	0.87
47527950--47528038	38	2.3	38	90	0	133	35	31	20	12	1.89
47527921--47528018	22	4.7	22	73	14	100	35	31	18	14	1.91
47529771--47529805	18	1.9	18	88	0	52	34	8	37	20	1.83
47533055--47533104	24	2.1	24	84	0	64	10	36	10	44	1.72
47536522--47536569	19	2.7	17	78	15	53	62	0	2	35	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47536520--47536564	19	2.3	20	81	11	58	60	0	2	37	1.09
47536550--47536641	39	2.4	38	81	3	94	58	1	3	36	1.21
47536772--47536963	9	20.2	9	65	22	56	30	4	2	62	1.27
47536836--47536896	19	3.3	19	73	17	65	32	4	0	62	1.17
47536777--47536947	9	17.5	10	66	19	60	29	4	2	63	1.27
47536819--47536883	27	2.4	27	84	7	78	30	6	1	61	1.29
47536928--47536984	18	3.1	18	73	12	53	42	0	0	57	0.98
47536929--47536981	26	2.0	28	85	7	74	43	0	0	56	0.99
47536928--47537019	36	2.6	36	74	10	89	35	1	1	61	1.10
47537167--47537207	19	2.2	19	86	0	55	31	0	4	63	1.15
47537270--47537309	20	2.0	20	90	0	62	27	12	12	47	1.77
47537743--47537770	13	2.2	13	100	0	56	32	0	14	53	1.41
47539149--47539174	12	2.2	12	100	0	52	46	15	7	30	1.74
47539880--47539937	18	3.2	18	72	0	62	41	5	37	15	1.70
47541459--47541486	6	4.7	6	100	0	56	0	14	0	85	0.59
47549809--47549868	29	2.1	29	87	9	88	66	1	0	31	1.01
47554590--47554636	20	2.3	20	89	7	69	51	4	19	25	1.65
47554600--47554639	20	2.0	20	100	0	80	45	5	20	30	1.72
47555219--47555292	31	2.4	31	75	11	78	63	5	0	31	1.17
47556211--47556278	31	2.2	30	80	10	75	39	10	7	42	1.67
47556231--47556291	31	2.0	31	90	0	95	39	8	6	45	1.60
47558909--47558963	3	18.0	3	88	3	83	30	1	1	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47560776--47560845	23	2.9	24	76	6	61	25	12	7	54	1.63
47560809--47560849	12	3.4	12	79	0	55	31	7	4	56	1.48
47561608--47561634	2	13.5	2	100	0	54	51	0	0	48	1.00
47571935--47572088	35	4.5	34	86	2	200	37	16	24	20	1.93
47571935--47572088	69	2.2	69	94	0	272	37	16	24	20	1.93
47586436--47586551	53	2.2	54	85	4	155	45	21	14	18	1.85
47586419--47586551	27	5.0	26	87	3	149	45	22	14	17	1.84
47586502--47586584	27	3.1	26	83	10	87	38	16	16	27	1.91
47588159--47588198	20	2.0	21	90	5	64	67	2	22	7	1.28
47588184--47588217	9	3.4	10	88	12	52	79	0	20	0	0.73
47588164--47588217	20	2.8	20	86	8	67	75	1	20	1	0.98
47591385--47591423	20	1.9	20	84	5	51	51	2	15	30	1.57
47591919--47592087	86	2.0	86	98	0	329	42	26	1	29	1.66
47594941--47594965	2	12.5	2	100	0	50	48	0	0	52	1.00
47594987--47595030	23	1.9	23	100	0	88	38	4	27	29	1.76
47595157--47595245	30	3.0	29	78	4	106	32	15	17	33	1.92
47600101--47600129	14	2.1	14	100	0	58	65	6	0	27	1.18
47605020--47605435	27	15.4	27	84	1	492	43	21	16	18	1.88
47605835--47605899	29	2.2	30	86	10	89	26	12	15	46	1.81
47605899--47605970	34	2.1	35	82	5	85	26	20	22	30	1.98
47607559--47607592	3	11.3	3	93	0	59	35	0	29	35	1.58
47608425--47608532	50	2.3	47	75	12	105	29	13	9	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47610854--47610905	13	3.9	14	90	9	58	71	0	7	21	1.11
47610844--47610889	19	2.5	18	82	6	56	67	0	4	28	1.10
47610840--47610891	23	2.3	23	83	9	63	67	0	5	26	1.13
47610862--47610908	13	3.5	13	91	8	69	74	0	8	17	1.05
47615004--47615056	20	2.7	20	84	0	79	24	41	24	9	1.84
47615825--47615885	5	11.4	5	84	10	77	42	1	0	55	1.09
47619559--47619595	13	2.9	13	96	4	67	24	27	8	40	1.83
47620041--47620118	39	2.0	39	92	0	129	51	8	8	30	1.64
47622691--47622728	20	1.9	20	100	0	76	39	21	31	7	1.82
47628371--47628412	17	2.3	18	80	16	50	30	9	9	50	1.67
47647863--47647889	9	3.0	9	100	0	54	33	22	0	44	1.53
47652333--47652357	11	2.3	11	100	0	50	36	0	16	48	1.46
47661231--47661443	104	2.0	104	100	0	426	33	13	24	29	1.93
47664457--47664602	43	3.4	43	81	3	125	28	17	21	32	1.96
47678406--47678572	82	2.0	82	94	0	289	35	20	11	32	1.88
47678825--47678881	16	3.6	16	92	0	87	42	7	22	28	1.80
47678865--47678953	44	2.0	45	85	10	121	31	5	25	37	1.79
47679056--47679211	58	2.7	59	80	7	167	50	3	1	44	1.28
47679124--47679162	10	3.9	10	82	0	51	53	0	0	46	1.00
47679124--47679174	20	2.4	22	90	9	88	50	1	0	47	1.12
47679180--47679236	20	2.6	23	76	21	59	50	7	1	40	1.40
47679421--47679459	14	2.8	14	80	0	51	41	12	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47683076--47683549	110	4.4	108	80	12	494	48	8	6	36	1.60
47688434--47688475	20	2.0	22	86	9	61	26	19	30	23	1.98
47689182--47689221	19	2.0	19	85	9	53	47	5	0	47	1.24
47689984--47690034	24	2.0	24	81	11	57	60	0	7	31	1.25
47690853--47690886	15	2.3	15	89	0	50	50	11	2	35	1.54
47706180--47706242	30	2.1	30	96	0	117	23	3	15	57	1.53
47706324--47706361	18	2.1	18	85	9	51	21	0	13	65	1.26
47707695--47707815	47	2.6	44	81	7	143	39	6	15	38	1.74
47707731--47707925	108	1.8	107	83	4	257	37	6	16	38	1.75
47707851--47708055	47	4.2	49	79	7	231	38	6	15	39	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222