genome.fa.s15.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  165  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52848266--52848463	27	7.3	27	77	3	166	20	16	18	44	1.87
52848306--52848464	81	2.0	81	83	2	203	22	14	18	45	1.85
52850963--52851004	12	3.5	12	83	0	57	66	2	21	9	1.32
52850989--52851031	20	2.1	20	86	4	59	60	2	27	9	1.40
52852202--52852238	14	2.6	14	86	0	56	37	0	45	16	1.47
52856713--52856751	5	7.6	5	82	5	51	41	17	0	41	1.50
52857023--52857061	19	2.1	19	100	0	78	38	20	5	35	1.75
52857518--52857550	13	2.4	14	90	5	50	39	12	6	42	1.67
52859040--52859071	15	2.1	15	100	0	64	62	6	6	25	1.42
52861272--52861333	31	2.0	31	90	0	97	40	11	24	24	1.87
52861448--52861477	7	4.4	7	95	4	53	43	0	0	56	0.99
52861992--52862034	22	2.0	21	86	4	59	4	41	2	51	1.35
52861992--52862043	21	2.4	22	83	3	61	5	38	1	53	1.36
52862878--52862916	19	2.0	19	85	5	51	82	0	7	10	0.86
52867589--52867642	27	2.0	27	85	0	72	31	22	5	40	1.77
52879995--52880023	11	2.6	11	100	0	58	51	0	0	48	1.00
52880066--52880091	11	2.4	11	100	0	52	53	0	7	38	1.30
52882876--52882927	21	2.4	22	83	3	61	53	1	38	5	1.36
52890791--52890898	44	2.4	43	78	6	117	28	19	19	32	1.96
52890917--52891712	51	15.9	51	81	6	831	28	24	17	29	1.97
52890827--52891180	194	1.8	194	88	2	550	27	22	18	31	1.98
52895575--52895621	19	2.5	20	86	6	62	44	8	19	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52897468--52897501	17	1.9	18	88	5	52	58	20	2	17	1.51
52899667--52899731	29	2.2	29	86	0	94	10	35	27	26	1.90
52903542--52903663	59	2.1	59	100	0	244	18	26	21	34	1.96
52905235--52905275	21	1.9	22	85	5	57	43	29	0	26	1.55
52907768--52907810	22	2.1	20	83	12	52	53	9	11	25	1.67
52908749--52908987	41	5.9	41	78	3	187	15	23	27	33	1.95
52908749--52908968	81	2.7	81	79	8	223	14	22	27	35	1.93
52917223--52917445	39	5.7	40	87	8	275	23	26	22	26	2.00
52917217--52917445	79	2.9	80	85	9	276	23	27	22	27	1.99
52925186--52925447	39	6.7	40	88	7	337	24	27	22	25	2.00
52926525--52926549	13	1.9	13	100	0	50	0	8	4	88	0.64
52928774--52928849	12	6.4	12	82	14	104	57	7	9	25	1.56
52930187--52930219	13	2.5	13	95	0	57	39	18	30	12	1.87
52937361--52937533	46	3.7	46	78	10	190	21	20	27	29	1.98
52937358--52937528	93	1.8	93	91	0	279	21	21	28	28	1.98
52937758--52937795	19	2.0	20	85	15	53	36	0	23	39	1.55
52938865--52938957	39	2.4	39	90	0	141	22	29	23	24	1.99
52946604--52946714	39	2.9	38	84	2	141	23	28	22	25	1.99
52954376--52954465	39	2.3	39	90	0	135	21	27	24	26	1.99
52957591--52957661	33	2.2	33	79	5	81	25	26	22	25	2.00
52963144--52963299	45	3.6	44	76	14	173	30	28	17	23	1.97
52971070--52971119	10	4.8	10	80	9	55	60	12	0	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52971906--52971958	26	2.0	26	85	0	70	45	5	11	37	1.64
52984106--52984167	32	1.9	32	93	0	106	12	27	9	50	1.72
52992985--52993027	17	2.4	18	84	3	61	41	0	6	51	1.29
52993366--52993472	25	4.3	25	77	9	103	25	23	19	31	1.98
52995609--52995871	47	5.6	47	90	1	391	28	29	8	33	1.86
52995609--52995871	96	2.8	96	91	2	399	28	29	8	33	1.86
52995611--52995871	143	1.8	141	91	1	405	28	29	8	33	1.87
53001900--53002028	57	2.3	56	84	1	168	34	17	16	32	1.92
53005967--53006142	46	3.8	46	75	14	182	21	21	28	29	1.98
53005965--53006135	93	1.8	93	91	2	281	21	21	28	28	1.99
53010548--53010593	25	1.9	24	82	8	58	41	15	13	30	1.85
53020934--53021156	39	5.7	40	87	8	275	23	26	22	26	2.00
53020928--53021156	79	2.9	80	85	9	276	23	27	22	27	1.99
53028906--53029167	39	6.7	40	89	7	337	23	27	23	26	2.00
53033427--53033465	14	2.9	14	96	3	71	20	0	12	66	1.24
53033946--53033998	21	2.5	21	84	9	72	39	1	1	56	1.21
53034071--53034170	12	9.1	11	76	15	82	48	12	2	38	1.52
53034069--53034223	21	7.2	21	68	18	95	48	14	1	34	1.56
53034092--53034162	23	3.2	23	73	15	85	49	8	2	39	1.48
53034071--53034223	44	3.5	45	89	7	221	48	14	1	35	1.55
53034109--53034170	32	1.9	32	90	6	99	46	11	1	40	1.49
53034159--53034240	20	4.4	19	66	20	57	48	18	2	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53037466--53037514	21	2.3	21	89	0	71	42	20	34	2	1.64
53037947--53038038	42	2.2	42	86	5	123	26	22	22	28	1.99
53037960--53038187	43	5.4	42	81	9	225	26	22	19	31	1.98
53038004--53038187	85	2.2	86	84	6	241	26	21	19	32	1.97
53038570--53038632	30	2.1	30	93	0	108	22	3	17	57	1.54
53040725--53040939	41	5.2	41	90	2	324	30	24	20	25	1.98
53041842--53041871	2	15.0	2	92	0	51	46	0	3	50	1.18
53042588--53042639	21	2.5	22	78	9	63	46	5	0	48	1.26
53045056--53045189	33	4.2	33	79	12	172	8	18	11	60	1.57
53046261--53046316	21	2.6	22	91	2	87	21	12	25	41	1.88
53051357--53051391	18	2.0	17	88	5	52	45	0	0	54	0.99
53051266--53051648	120	3.2	120	99	0	748	43	2	5	48	1.39
53051477--53051511	18	2.0	17	88	5	52	45	0	0	54	0.99
53051597--53051631	18	2.0	17	88	5	52	45	0	0	54	0.99
53054910--53054975	33	2.0	33	100	0	132	36	6	21	36	1.78
53057036--53057079	22	2.0	21	87	12	63	38	13	9	38	1.77
53057423--53057484	24	2.6	23	75	12	63	51	1	0	46	1.10
53057663--53057700	13	2.9	13	88	0	58	36	26	10	26	1.89
53058495--53059061	126	4.5	125	86	4	752	30	16	22	30	1.96
53058531--53059061	250	2.1	250	88	3	793	29	16	23	30	1.97
53062189--53062304	21	5.5	22	74	13	73	25	0	26	47	1.58
53062183--53062821	43	15.0	43	79	7	626	25	0	27	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53062183--53062852	22	30.0	22	79	8	626	24	0	27	46	1.57
53062183--53062821	65	10.0	64	79	8	594	25	0	27	46	1.56
53064261--53064298	20	1.9	20	84	10	51	55	7	2	34	1.43
53065300--53065338	20	2.0	20	85	10	53	53	7	2	35	1.43
53066294--53066353	11	5.4	11	79	2	66	43	5	33	18	1.72
53066286--53066353	22	3.0	22	82	4	82	44	4	30	20	1.71
53066531--53066607	40	1.9	40	89	0	118	25	29	23	20	1.99
53067481--53068594	93	12.0	94	89	4	934	38	17	16	27	1.91
53067529--53068583	70	15.2	69	74	12	735	38	17	16	27	1.91
53067797--53067834	20	1.9	20	94	0	67	47	13	13	26	1.79
53067898--53068280	163	2.4	163	94	2	664	38	17	16	27	1.91
53067898--53068346	163	2.8	163	87	8	630	38	17	16	27	1.91
53068061--53068597	93	5.8	93	95	0	950	38	16	16	27	1.90
53069288--53069385	28	3.5	28	85	2	126	29	25	13	31	1.93
53075727--53075764	20	1.9	20	94	0	67	47	13	13	26	1.79
53075667--53076024	93	3.9	93	94	2	589	38	17	16	27	1.92
53075805--53076187	163	2.3	163	93	2	592	39	17	16	26	1.91
53075801--53076527	93	7.8	92	92	2	886	39	16	16	28	1.90
53075747--53076280	256	2.1	256	96	0	987	38	17	16	27	1.91
53077220--53077345	28	4.5	28	87	2	164	30	24	14	30	1.94
53078687--53078749	27	2.3	27	80	0	72	19	39	28	12	1.88
53078800--53079007	30	7.2	28	70	22	105	68	0	30	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53078800--53079008	10	19.8	10	66	20	79	68	0	30	0	0.97
53078926--53079010	33	2.5	33	76	17	86	67	1	30	1	1.06
53078850--53079014	42	3.8	42	79	11	122	67	0	30	0	0.99
53079352--53080106	158	4.9	151	73	15	662	49	7	11	30	1.68
53079386--53080105	160	4.6	150	71	17	499	49	7	12	30	1.67
53079345--53080105	309	2.4	313	90	4	1214	49	7	11	30	1.67
53090485--53090547	29	2.2	29	82	5	74	53	11	6	28	1.60
53094499--53094531	3	11.0	3	100	0	66	33	0	0	66	0.92
53100575--53100751	46	3.8	46	85	1	230	29	22	9	38	1.85
53110598--53110638	21	2.0	21	81	18	50	21	26	19	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222