genome.fa.s15.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  108  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34381099--34381283	101	1.8	102	85	3	266	22	16	28	31	1.96
34381153--34381283	51	2.6	50	82	4	165	22	18	28	31	1.97
34381205--34381285	26	3.2	25	65	28	62	22	16	29	32	1.95
34381509--34381540	16	2.0	16	93	0	55	59	0	15	25	1.36
34383735--34383788	19	2.6	21	77	17	58	31	0	12	55	1.38
34387399--34387525	50	2.6	49	75	10	125	39	12	11	36	1.80
34405344--34405483	53	2.6	53	88	0	217	27	25	12	35	1.91
34407233--34407431	41	4.9	40	81	6	159	35	28	18	18	1.94
34407233--34407431	81	2.4	82	84	2	240	35	28	18	18	1.94
34407401--34407447	16	3.0	16	93	3	78	36	31	17	14	1.90
34407369--34407476	57	1.9	57	98	0	207	39	29	14	15	1.88
34407421--34407507	41	2.1	41	89	0	129	41	29	12	16	1.85
34407323--34407507	98	1.9	97	86	3	264	38	29	15	16	1.89
34407959--34408081	41	3.0	40	80	2	138	34	27	19	17	1.95
34408023--34408255	41	5.7	41	82	7	240	37	27	17	17	1.92
34407960--34408255	82	3.6	82	81	7	219	37	28	17	17	1.92
34410730--34410776	22	2.0	25	84	12	64	31	27	2	38	1.69
34417565--34417608	5	9.2	5	90	9	74	61	0	0	38	0.96
34417572--34417600	13	2.2	13	100	0	58	62	0	0	37	0.96
34417567--34417605	18	2.2	18	100	0	78	61	0	0	38	0.96
34417565--34417608	23	1.9	23	100	0	88	61	0	0	38	0.96
34422027--34422274	119	2.1	119	90	1	381	22	21	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34432666--34432711	21	2.2	21	88	0	65	4	26	2	67	1.21
34455227--34455257	14	2.3	13	94	5	53	90	3	6	0	0.55
34462022--34462083	18	3.3	19	74	12	56	30	1	1	66	1.11
34462016--34462055	18	2.2	18	86	4	53	32	0	0	67	0.91
34462089--34462132	21	2.0	21	82	4	52	29	4	2	63	1.26
34472208--34472564	40	8.9	40	86	3	477	43	26	15	14	1.86
34473125--34473169	20	2.2	20	88	0	63	28	15	11	44	1.81
34481993--34482068	20	3.8	20	73	0	71	35	19	34	10	1.86
34481990--34482081	40	2.3	41	79	9	109	33	19	34	11	1.89
34487986--34488182	101	2.0	101	93	0	340	29	11	25	33	1.91
34489912--34489953	21	2.0	20	82	13	50	47	11	7	33	1.68
34500712--34500789	29	2.7	28	84	11	104	25	15	30	28	1.96
34500742--34501243	174	2.9	174	98	0	959	29	14	25	30	1.95
34508441--34508518	29	2.7	28	84	11	104	25	15	30	28	1.96
34508471--34508970	172	2.9	174	97	1	950	29	14	25	30	1.95
34516145--34516222	29	2.7	28	84	11	104	25	15	30	28	1.96
34516175--34516676	174	2.9	174	98	0	968	29	14	25	30	1.95
34523881--34523958	29	2.7	28	84	11	104	25	15	30	28	1.96
34523911--34524412	174	2.9	174	98	0	950	29	14	24	30	1.95
34533706--34533760	27	2.0	27	100	0	110	49	18	3	29	1.64
34543903--34543957	27	2.0	27	100	0	110	49	18	3	29	1.64
34557821--34557886	27	2.4	27	82	0	78	33	19	16	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34560024--34560071	3	15.7	3	78	4	51	37	6	0	56	1.25
34560393--34560674	146	1.9	144	87	6	408	43	5	8	42	1.57
34570174--34570240	20	3.3	20	74	0	80	37	13	26	22	1.91
34576825--34576898	20	3.7	20	74	1	76	39	13	25	21	1.90
34589471--34589652	25	7.4	25	87	1	217	19	23	18	37	1.94
34589586--34589678	22	4.1	22	80	9	80	18	24	18	38	1.92
34590010--34590174	45	3.6	45	85	0	204	25	12	24	36	1.91
34591971--34592039	20	3.3	20	76	7	75	43	26	15	14	1.85
34592038--34592090	24	2.2	24	82	0	61	45	15	20	18	1.85
34593712--34593745	16	2.2	16	89	5	52	26	8	14	50	1.72
34597945--34598051	20	5.5	19	64	5	61	14	30	22	31	1.94
34597910--34598082	39	4.4	39	83	1	204	16	28	21	33	1.95
34597908--34598056	78	1.9	78	90	2	237	15	29	21	33	1.94
34597908--34598082	78	2.2	78	86	2	235	16	29	21	33	1.94
34610741--34610783	20	2.2	20	83	8	52	25	6	6	60	1.48
34645563--34645606	21	2.1	21	100	0	88	36	4	27	31	1.77
34646108--34646158	26	2.0	26	92	0	84	39	25	21	13	1.90
34646332--34646586	27	9.5	27	83	1	271	20	20	18	40	1.92
34656198--34656274	3	25.7	3	94	0	136	0	33	0	66	0.92
34657898--34657930	15	2.2	15	89	10	50	57	0	0	42	0.98
34657996--34658052	29	2.0	29	86	6	80	52	10	7	29	1.62
34666172--34666379	28	7.6	27	94	2	326	31	28	12	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34666172--34666379	55	3.8	55	92	1	344	31	28	12	26	1.93
34666172--34666379	111	1.9	110	94	1	371	31	28	12	26	1.93
34694138--34694314	27	6.5	27	83	3	203	27	15	27	29	1.96
34694139--34694294	82	1.9	81	88	3	233	26	15	28	29	1.96
34694135--34694314	82	2.2	81	83	3	227	27	15	27	30	1.96
34698051--34698097	17	2.8	16	84	9	58	34	29	19	17	1.94
34701976--34702023	2	24.0	2	95	0	87	52	0	47	0	1.00
34702853--34702903	14	3.5	15	86	10	79	7	33	0	58	1.27
34704535--34704600	32	2.1	32	94	5	116	31	6	22	39	1.79
34707109--34707183	27	2.7	28	73	19	75	41	20	14	24	1.89
34707078--34707183	55	1.9	55	94	0	185	42	17	14	25	1.87
34707082--34707172	27	3.3	27	69	14	78	39	20	13	26	1.89
34707324--34707404	26	3.1	26	90	0	117	22	20	20	35	1.96
34711052--34711114	32	2.0	32	100	0	126	38	11	19	31	1.86
34714955--34715003	24	2.0	24	100	0	98	38	12	24	24	1.90
34715708--34715804	32	3.0	32	100	0	194	37	12	18	31	1.88
34717218--34717336	3	40.3	3	88	1	170	1	1	30	66	1.11
34730516--34730778	40	6.6	40	88	3	325	26	27	20	24	1.99
34738439--34738701	40	6.6	40	88	3	325	26	27	20	24	1.99
34740707--34741019	47	6.7	47	93	0	509	29	29	7	33	1.86
34740707--34741277	141	4.2	140	84	10	822	29	28	8	33	1.87
34740993--34741041	16	3.4	16	68	26	54	34	28	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34740993--34741046	27	2.0	27	100	0	108	33	29	0	37	1.58
34740950--34741093	74	1.9	74	95	0	261	31	27	6	34	1.82
34741020--34741277	47	5.5	47	96	0	462	29	28	9	33	1.88
34740805--34741234	215	2.0	215	95	0	779	30	28	8	33	1.86
34740758--34741277	262	2.0	262	96	0	959	30	28	8	33	1.87
34752235--34752276	17	2.5	16	82	17	50	4	19	2	73	1.12
34757113--34757151	13	3.1	12	85	10	51	30	10	2	56	1.46
34757104--34757151	25	2.0	24	87	4	69	25	8	4	62	1.41
34757096--34757152	12	4.6	12	76	6	60	26	10	3	59	1.46
34757312--34757358	24	1.9	25	82	4	60	42	4	25	27	1.73
34765545--34765582	19	2.1	19	85	14	53	28	18	13	39	1.88
34772680--34772808	67	1.9	67	88	1	197	25	34	19	20	1.96
34772930--34773043	57	2.0	57	86	6	160	25	25	18	30	1.98
34776138--34776194	16	3.5	16	76	4	51	40	31	3	24	1.72
34776290--34776357	23	3.0	23	88	0	100	42	26	10	20	1.84
34777121--34777226	52	2.1	51	83	5	133	20	14	10	54	1.69
34777804--34777850	22	2.1	22	84	0	58	46	14	19	19	1.84
34777868--34778108	32	7.5	32	79	3	229	37	23	19	19	1.94
34777862--34778108	64	3.9	64	79	9	254	37	22	19	20	1.95
34777868--34778108	96	2.5	96	82	6	283	37	23	19	19	1.94
34778111--34778164	26	2.1	26	82	0	63	37	25	18	18	1.94
34778280--34778352	24	3.1	23	84	5	92	47	24	8	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34778431--34778630	27	7.5	26	86	8	251	25	26	16	32	1.96
34778415--34778602	81	2.3	80	89	2	288	26	26	17	30	1.97
34778415--34778630	80	2.7	81	85	5	287	25	25	17	31	1.97
34780080--34780344	40	6.7	40	85	3	302	27	27	20	24	1.99
34780082--34780344	80	3.3	80	87	2	334	26	27	20	24	1.99
34780276--34780353	40	1.9	41	82	10	97	26	28	21	23	1.99
34787626--34787890	40	6.7	40	85	3	302	27	27	20	24	1.99
34787628--34787890	80	3.3	80	87	2	334	26	27	20	24	1.99
34787822--34787899	40	1.9	41	82	10	97	26	28	21	23	1.99
34793243--34793273	12	2.7	11	90	9	53	74	0	3	22	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222