genome.fa.s15.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  191  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61057554--61057596	22	2.0	22	85	0	59	55	9	13	20	1.66
61059269--61059315	16	2.9	16	81	15	60	44	0	0	55	0.99
61071371--61071665	145	2.0	145	98	0	563	35	17	18	27	1.94
61086921--61087059	73	1.9	73	96	0	260	45	7	10	36	1.67
61089121--61089240	41	2.9	41	79	0	114	35	16	20	27	1.94
61096856--61096888	12	2.8	12	90	0	57	63	0	0	36	0.95
61096847--61096890	12	3.3	13	81	12	54	56	0	0	43	0.99
61114493--61114554	29	2.1	29	90	0	97	30	29	12	27	1.93
61120257--61121486	111	11.4	105	71	9	442	36	16	16	30	1.91
61120280--61120863	105	5.4	103	73	13	388	32	17	16	33	1.93
61120932--61121156	103	2.2	102	81	5	265	43	16	16	24	1.87
61121065--61121235	54	3.1	54	69	12	139	33	18	18	28	1.95
61120950--61121604	112	5.9	112	77	11	561	40	14	16	28	1.89
61121597--61121703	48	2.2	47	82	8	126	46	16	15	20	1.84
61121645--61122067	108	4.0	105	75	8	340	39	15	15	29	1.88
61121499--61121793	154	1.9	153	83	6	362	40	16	16	26	1.90
61125716--61125763	22	2.5	17	72	27	51	16	18	47	16	1.82
61127748--61127783	18	2.0	18	94	0	63	27	19	22	30	1.98
61128025--61128054	13	2.3	13	94	0	51	40	46	0	13	1.43
61130718--61130812	19	5.2	17	71	17	50	15	6	2	75	1.09
61130875--61130945	32	2.1	34	84	7	110	39	0	0	60	0.97
61130899--61130959	22	2.8	22	87	7	81	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61130907--61130975	22	3.1	21	84	10	84	44	0	0	55	0.99
61131026--61131066	21	2.0	21	85	9	57	34	0	2	63	1.08
61131351--61131397	19	2.4	19	89	3	67	55	0	8	36	1.31
61131365--61131408	19	2.3	19	92	4	70	45	0	6	47	1.29
61131407--61131461	19	2.8	20	83	5	85	60	0	3	36	1.15
61131906--61131988	41	2.0	42	90	2	132	34	7	4	53	1.50
61132057--61132203	73	2.0	73	89	0	222	52	3	2	41	1.32
61132796--61132838	20	2.1	20	83	12	52	37	4	4	53	1.43
61134423--61134501	30	2.6	30	89	0	113	29	26	15	29	1.96
61137888--61137917	13	2.3	13	100	0	60	53	0	0	46	1.00
61137875--61137920	19	2.4	18	78	7	56	58	0	0	41	0.98
61137907--61138174	36	7.5	34	74	15	206	52	2	2	42	1.26
61137960--61138006	21	2.2	22	92	3	78	53	2	2	42	1.25
61138018--61138093	14	5.5	14	68	14	59	53	1	1	43	1.17
61138106--61138150	21	2.1	21	88	8	65	62	0	2	35	1.08
61137897--61138164	110	2.5	110	74	13	268	52	2	2	42	1.26
61138128--61138174	11	4.1	12	78	10	53	59	0	0	40	0.97
61138214--61138258	9	5.0	9	84	10	56	73	4	0	22	1.01
61138278--61138323	19	2.3	20	75	17	51	71	2	8	17	1.21
61139436--61139518	43	1.9	43	85	4	114	10	9	6	73	1.24
61139530--61139577	18	2.7	18	80	9	53	12	10	2	75	1.14
61139486--61139599	40	2.9	38	81	12	115	12	8	5	73	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61140851--61140902	26	1.9	28	92	7	90	73	9	11	5	1.25
61140785--61140924	62	2.4	56	78	13	147	75	5	10	8	1.18
61145009--61145112	8	12.4	8	66	20	52	33	0	15	50	1.51
61145009--61145086	27	3.1	27	89	10	114	34	0	12	52	1.40
61144926--61145065	19	7.1	19	71	19	99	32	0	12	54	1.39
61145000--61145086	21	4.0	21	78	18	97	32	0	13	54	1.40
61145127--61145248	60	2.0	60	85	6	167	31	0	13	53	1.46
61145284--61145359	37	2.1	37	97	0	143	55	3	2	38	1.33
61145396--61145437	16	2.7	15	85	7	57	38	2	2	57	1.25
61145506--61145568	21	3.0	21	85	2	81	58	14	0	26	1.36
61145641--61145704	27	2.4	27	91	0	110	12	31	25	31	1.92
61160020--61160067	21	2.3	22	85	10	73	50	0	2	47	1.12
61163707--61163745	20	1.9	20	85	15	53	41	7	5	46	1.55
61164409--61164464	22	2.5	23	82	2	69	51	1	1	44	1.22
61164440--61164479	16	2.5	16	91	0	62	47	2	7	42	1.45
61164552--61164579	9	3.1	9	100	0	56	32	0	10	57	1.33
61164468--61164677	68	3.1	68	97	1	388	40	4	9	45	1.57
61164620--61164647	9	3.1	9	100	0	56	32	0	10	57	1.33
61164742--61164788	23	2.0	23	88	8	69	55	2	0	42	1.12
61165521--61165703	10	19.3	9	67	19	54	59	0	2	38	1.10
61165579--61165639	9	6.4	9	73	16	52	68	0	1	29	0.99
61165523--61165710	81	2.3	81	89	6	276	61	0	2	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61165520--61165662	11	13.9	11	68	25	82	59	0	2	38	1.09
61172196--61172278	43	1.9	43	97	0	157	38	9	26	25	1.86
61172654--61172704	25	2.0	25	100	0	102	41	19	15	23	1.90
61174435--61174487	19	2.6	21	82	11	58	22	1	24	50	1.59
61177392--61177446	16	3.7	15	77	20	53	34	0	0	65	0.93
61197221--61197262	19	2.2	19	87	8	59	28	0	9	61	1.27
61202916--61202997	30	2.7	31	77	7	87	58	17	3	20	1.53
61203293--61203350	25	2.2	27	90	6	93	48	6	5	39	1.52
61208052--61208276	113	2.0	111	93	1	387	36	16	12	35	1.86
61226046--61226143	50	2.0	50	87	2	144	48	11	8	31	1.68
61228383--61228413	9	3.4	9	90	0	53	25	12	22	38	1.90
61230177--61230239	24	2.7	23	85	2	81	44	19	11	25	1.83
61256199--61256279	40	2.0	40	92	7	137	37	1	0	61	1.04
61256166--61256220	17	3.4	17	70	14	53	43	1	0	54	1.10
61256244--61256292	11	4.3	12	75	19	52	40	0	0	59	0.98
61256253--61256292	21	1.9	21	94	0	71	40	0	0	60	0.97
61256252--61256299	21	2.2	20	82	13	60	35	0	4	60	1.16
61259354--61259402	11	4.2	12	80	14	50	65	0	0	34	0.93
61259363--61259403	8	5.2	8	86	13	59	65	0	0	34	0.93
61259358--61259403	16	2.9	16	84	15	60	67	0	0	32	0.91
61259359--61259404	11	3.9	11	81	13	56	67	0	0	32	0.91
61261189--61261546	176	2.0	180	91	3	591	41	14	13	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61261807--61261835	11	2.5	12	94	5	51	27	0	0	72	0.85
61261950--61261996	20	2.2	22	77	7	53	25	10	2	61	1.39
61264589--61264618	3	10.0	3	100	0	60	33	0	0	66	0.92
61265632--61265683	24	2.2	24	96	0	95	25	9	17	48	1.77
61266111--61266296	93	2.0	95	94	2	331	39	5	7	47	1.55
61266212--61266262	16	2.8	19	67	27	56	37	0	11	50	1.39
61273881--61274593	111	6.2	111	81	9	801	37	13	16	33	1.87
61274299--61274587	123	2.5	117	87	7	392	40	12	14	32	1.84
61274573--61274870	116	2.6	117	85	5	410	31	18	15	34	1.91
61276616--61276663	20	2.5	18	81	18	53	31	0	2	66	1.03
61280356--61280385	10	3.0	10	95	0	51	46	23	0	30	1.52
61281237--61281280	18	2.5	17	82	13	54	0	61	0	38	0.96
61283376--61283422	24	2.0	24	91	8	78	53	0	19	27	1.45
61285571--61285667	46	2.1	46	90	1	151	34	7	9	49	1.62
61297595--61297635	21	2.0	21	90	9	66	39	4	14	41	1.67
61309117--61309153	19	1.9	19	94	0	65	35	10	16	37	1.83
61313385--61313423	20	1.9	20	89	5	60	43	0	23	33	1.54
61313608--61313680	29	2.6	27	69	16	67	21	17	21	38	1.93
61315054--61315115	30	2.0	31	87	3	90	20	43	0	35	1.53
61315218--61315275	30	2.0	29	90	10	91	20	44	0	34	1.52
61316270--61316310	19	2.1	20	86	4	57	31	9	2	56	1.45
61317663--61317701	12	3.2	12	85	0	51	20	23	5	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61317954--61318142	50	3.7	50	79	4	198	23	28	21	26	1.99
61321306--61321341	15	2.4	15	90	0	54	30	25	8	36	1.85
61322692--61322750	30	2.0	30	90	6	93	20	44	0	35	1.52
61323745--61323785	19	2.1	20	86	4	57	31	9	2	56	1.45
61325133--61325171	12	3.2	12	85	0	51	20	23	5	51	1.67
61325424--61325612	50	3.7	50	79	4	198	23	28	21	26	1.99
61328776--61328811	15	2.4	15	90	0	54	30	25	8	36	1.85
61330644--61330669	9	2.9	9	100	0	52	23	0	0	76	0.78
61347724--61347756	16	2.0	17	88	5	50	21	0	3	75	0.93
61353458--61353563	41	2.5	43	89	4	162	31	26	14	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222