genome.fa.s15.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  153  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49291101--49291427	149	2.2	149	83	7	403	24	23	18	33	1.97
49294983--49295334	41	8.7	40	81	5	345	24	21	22	31	1.98
49295734--49295766	14	2.3	15	94	5	59	30	0	33	36	1.58
49298080--49298116	17	2.2	17	95	0	65	29	13	24	32	1.93
49300219--49300365	43	3.4	44	82	3	167	24	18	25	31	1.97
49300533--49300565	17	1.9	17	93	0	57	48	0	0	51	1.00
49300542--49300584	20	2.2	20	82	0	50	51	2	0	46	1.13
49300650--49300687	10	3.7	10	86	6	58	42	0	0	57	0.98
49301606--49301657	16	3.0	16	81	13	59	48	0	26	25	1.52
49302698--49302757	20	3.0	20	73	11	59	61	1	1	35	1.16
49302698--49302748	21	2.5	21	80	3	59	62	0	1	35	1.06
49304405--49304599	92	2.1	92	98	0	372	29	11	16	42	1.83
49306218--49306259	21	2.0	21	85	0	57	33	0	23	42	1.55
49306622--49306678	25	2.3	25	84	6	71	17	29	17	35	1.93
49306695--49306754	23	2.5	24	94	2	104	18	20	23	38	1.93
49306694--49306773	23	3.3	24	85	3	81	20	21	21	37	1.94
49306760--49306834	25	3.0	25	75	9	71	25	28	18	28	1.98
49326169--49326258	46	2.0	46	84	0	117	43	7	5	43	1.56
49326355--49326485	64	2.0	64	97	0	244	36	6	3	52	1.46
49326377--49326479	32	3.2	32	64	10	84	33	8	2	55	1.46
49328082--49328280	68	3.0	67	75	17	227	42	3	5	49	1.42
49328155--49328288	58	2.3	59	82	8	148	44	2	5	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49340855--49340926	18	3.9	18	74	16	67	55	0	2	41	1.14
49340855--49340926	19	3.8	18	73	8	63	55	0	2	41	1.14
49341623--49341694	10	7.4	10	71	22	64	44	0	1	54	1.08
49341624--49341692	16	4.4	16	73	8	61	46	0	1	52	1.09
49341623--49341694	21	3.7	20	74	22	64	44	0	1	54	1.08
49341616--49341678	26	2.5	25	76	19	76	42	0	1	55	1.09
49341581--49341699	58	2.1	56	86	7	161	44	0	2	52	1.14
49342860--49342921	17	3.3	19	80	14	58	67	1	0	30	1.00
49342980--49343030	26	2.1	23	85	10	66	45	5	0	49	1.26
49343963--49343992	16	1.9	16	93	6	53	26	0	26	46	1.53
49343977--49344216	98	2.5	96	79	9	215	39	2	17	40	1.63
49344248--49344793	125	4.3	126	89	1	810	32	18	21	27	1.96
49344248--49344793	251	2.2	251	88	1	826	32	18	21	27	1.96
49347842--49347922	38	2.1	38	97	0	153	46	8	1	43	1.42
49348235--49348286	21	2.5	22	90	6	81	7	19	36	36	1.80
49348528--49348570	18	2.4	18	92	0	68	44	11	27	16	1.82
49350367--49350423	29	2.0	29	92	0	96	54	3	1	40	1.28
49350420--49350483	33	1.9	33	84	12	87	46	0	28	25	1.53
49350420--49350486	11	6.2	10	81	14	71	47	0	28	23	1.52
49350423--49350487	22	3.0	21	86	10	87	47	0	29	23	1.52
49357554--49357599	14	3.3	14	77	20	51	43	0	8	47	1.34
49358920--49358952	11	2.8	12	90	9	50	27	0	6	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49363150--49363201	25	2.1	24	82	3	59	19	28	21	30	1.97
49370075--49370138	33	1.9	34	83	3	85	48	12	6	32	1.66
49371329--49371515	92	2.0	92	91	2	304	49	15	15	19	1.79
49371794--49371823	15	2.0	15	93	0	51	10	6	10	73	1.25
49373374--49373423	25	2.0	25	81	11	59	52	0	2	46	1.12
49373445--49373482	20	1.9	20	100	0	76	42	2	10	44	1.52
49376137--49376170	13	2.7	13	90	4	52	55	0	2	41	1.15
49378596--49378645	13	3.9	12	77	12	55	38	26	2	34	1.68
49380335--49380376	13	3.4	13	74	12	52	78	0	21	0	0.75
49385382--49385419	19	2.0	19	94	0	67	65	0	13	21	1.26
49386381--49386433	19	2.7	19	80	8	63	32	13	0	54	1.39
49386433--49386468	10	3.5	10	88	7	54	38	0	0	61	0.96
49386434--49386468	11	3.3	11	88	8	54	37	0	0	62	0.95
49386435--49386525	9	9.7	9	73	19	62	35	1	3	60	1.20
49386465--49386507	20	2.3	19	84	15	54	30	2	4	62	1.28
49386399--49386507	47	2.3	46	80	9	114	33	4	1	59	1.28
49389560--49390471	457	2.0	452	92	2	1533	28	10	14	45	1.79
49395008--49395056	20	2.5	20	87	9	66	48	20	4	26	1.67
49398317--49398360	16	2.8	16	77	16	56	38	2	0	59	1.10
49404612--49404664	16	3.2	16	94	5	97	24	0	37	37	1.56
49404889--49404934	15	2.9	16	84	12	51	50	0	0	50	1.00
49404900--49404934	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49404848--49405415	120	4.8	116	83	8	528	51	3	2	42	1.33
49405020--49405175	18	8.0	18	66	25	77	53	1	1	42	1.23
49405205--49405248	21	2.1	21	83	8	54	56	6	0	36	1.26
49405377--49405408	17	1.9	16	93	6	55	56	0	3	40	1.15
49405377--49405415	17	2.4	17	86	4	53	56	2	2	38	1.27
49405539--49405617	25	3.3	25	79	16	112	40	7	17	34	1.78
49415506--49415554	22	2.4	19	80	12	62	34	0	2	63	1.06
49416740--49416780	16	2.6	16	88	0	55	46	2	0	51	1.14
49416753--49416792	16	2.5	16	91	0	62	45	0	0	55	0.99
49425507--49425825	117	2.8	114	83	4	376	24	4	17	53	1.61
49426681--49426730	17	3.2	16	75	25	54	50	0	0	50	1.00
49429183--49429210	14	2.0	14	100	0	56	64	0	7	28	1.20
49430310--49430363	18	2.9	17	76	13	54	29	18	9	42	1.81
49436945--49436993	18	2.7	18	81	12	55	38	14	0	46	1.44
49452514--49452902	47	8.1	47	86	5	526	30	12	30	26	1.93
49452712--49452786	23	3.2	23	62	23	57	29	10	32	28	1.90
49452514--49452902	94	4.0	98	89	4	587	30	12	30	26	1.93
49452876--49452966	46	2.0	46	84	0	119	32	9	31	25	1.89
49452514--49452951	147	3.0	140	82	8	470	31	12	30	26	1.92
49453113--49453257	37	3.9	37	92	0	227	24	17	30	27	1.97
49454040--49454222	40	4.6	40	89	0	276	22	22	28	25	1.99
49454399--49454449	25	2.0	25	84	0	66	27	11	31	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49454434--49454542	57	1.9	57	88	1	164	23	19	28	28	1.98
49458267--49458657	47	8.1	47	85	6	503	30	12	30	26	1.92
49458467--49458541	23	3.2	23	62	23	57	29	10	32	28	1.90
49458267--49458657	94	4.0	98	87	5	564	30	12	30	26	1.92
49458631--49458721	46	2.0	46	82	0	110	32	8	31	26	1.87
49458267--49458706	149	3.0	140	81	9	447	31	12	30	26	1.92
49458868--49459012	37	3.9	37	94	0	245	24	18	31	26	1.98
49461358--49461488	61	2.1	61	81	2	156	35	8	16	40	1.78
49461604--49461656	25	2.1	25	92	0	88	35	16	20	26	1.94
49461629--49461761	41	3.2	41	93	0	221	32	18	18	31	1.94
49464671--49464695	11	2.3	11	100	0	50	48	0	8	44	1.32
49468316--49468446	64	2.0	64	95	0	235	51	3	7	36	1.48
49468322--49468424	32	3.2	32	64	10	84	54	2	9	33	1.48
49468546--49468618	20	3.3	20	66	20	56	42	6	2	47	1.44
49468538--49468644	46	2.3	46	91	0	169	42	7	3	45	1.50
49470472--49470502	3	10.3	3	100	0	62	32	0	0	67	0.91
49477856--49478024	40	4.2	40	89	2	234	24	18	28	27	1.98
49477800--49478024	80	2.8	80	80	6	242	24	20	27	27	1.99
49477801--49478024	40	5.6	40	80	9	219	25	20	27	26	1.99
49477880--49478057	80	2.2	80	83	5	211	25	20	28	25	1.99
49479332--49479389	24	2.4	24	97	0	107	3	29	36	31	1.74
49485612--49485836	40	5.7	40	84	5	278	24	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49485612--49485869	80	3.2	80	81	7	224	25	20	27	25	1.99
49485612--49485869	119	2.2	119	79	6	265	25	20	27	25	1.99
49491918--49492026	7	15.6	7	87	3	114	28	20	1	49	1.59
49491929--49492026	35	2.8	36	84	4	128	27	19	2	51	1.58
49491918--49492026	42	2.6	42	88	0	155	28	20	1	49	1.59
49519797--49519834	7	5.4	7	93	0	67	26	13	26	34	1.93
49525388--49525425	5	7.6	5	100	0	76	81	0	0	18	0.69
49531204--49531262	23	2.6	23	91	0	91	27	38	20	13	1.90
49535001--49535066	29	2.2	30	91	2	116	21	24	15	39	1.91
49536593--49536626	17	2.1	17	88	5	52	41	32	5	20	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222