genome.fa.s15.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  22  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6835152--6835185	16	2.1	17	88	5	52	50	0	23	26	1.50
6835525--6835557	15	2.2	15	94	0	57	39	12	3	45	1.57
6839120--6840646	94	16.3	94	80	5	1310	33	18	19	29	1.95
6839515--6839657	50	3.1	43	71	19	108	33	16	19	30	1.94
6839467--6839613	50	3.1	50	72	20	141	34	17	20	28	1.95
6842468--6842513	23	2.0	23	83	8	58	17	10	0	71	1.13
6842558--6842617	3	19.7	3	77	16	61	30	0	5	65	1.14
6845242--6845300	29	2.0	31	83	6	77	30	8	5	55	1.51
6851982--6852025	21	2.1	21	83	8	54	36	0	2	61	1.09
6857052--6857087	6	5.7	6	87	12	54	80	0	19	0	0.71
6857460--6857492	7	4.9	7	92	3	50	81	0	3	15	0.80
6859426--6859690	103	2.6	104	91	0	424	29	30	20	19	1.97
6860018--6860082	30	2.2	29	81	8	76	30	27	6	35	1.81
6860025--6860082	30	1.9	30	85	0	80	31	24	6	37	1.82
6866897--6867161	103	2.6	104	91	0	424	29	30	20	19	1.97
6867489--6867553	30	2.2	29	81	8	76	30	27	6	35	1.81
6867496--6867553	30	1.9	30	85	0	80	31	24	6	37	1.82
6868889--6869480	87	6.8	87	95	0	1033	29	22	23	24	1.99
6868889--6869480	260	2.3	261	95	0	1053	29	22	23	24	1.99
6869699--6869815	44	2.7	44	97	0	216	28	21	27	23	1.99
6869659--6869854	44	4.5	44	82	2	146	31	22	23	21	1.99
6869742--6869903	87	1.9	87	84	0	216	33	19	22	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6869659--6869902	131	1.9	131	81	1	301	31	20	23	23	1.98
6870644--6870702	24	2.3	26	75	18	63	8	13	3	74	1.17
6874585--6874649	21	3.0	22	82	12	66	64	4	1	29	1.22
6876057--6877176	44	25.2	44	72	7	643	29	22	17	30	1.97
6876067--6877174	133	8.3	132	82	4	843	29	23	17	30	1.97
6876057--6876498	226	2.0	221	84	4	573	29	23	16	30	1.96
6876057--6877173	89	12.6	88	78	5	811	29	22	17	30	1.97
6876057--6877176	177	6.3	176	75	6	831	29	22	17	30	1.97
6878445--6878486	16	2.8	16	85	7	52	14	14	0	71	1.15
6883678--6883742	21	3.0	22	82	12	66	64	4	1	29	1.22
6885403--6885429	7	3.9	7	100	0	54	25	0	0	74	0.83
6898820--6898854	17	2.1	17	100	0	70	17	22	5	54	1.64
6906437--6906471	1	35.0	1	100	0	70	0	0	0	100	0.00
6923485--6923922	44	9.9	45	78	4	383	26	15	27	30	1.96
6923480--6923922	132	3.3	132	91	0	688	26	16	26	30	1.96
6923938--6924087	45	3.2	45	67	18	124	28	19	22	29	1.98
6923905--6924093	97	2.0	95	94	2	333	29	19	22	29	1.98
6942092--6943072	92	10.7	92	94	0	1712	22	27	13	36	1.92
6948007--6948058	24	2.2	24	89	0	77	55	9	1	32	1.43
6949976--6950027	24	2.2	24	89	0	77	55	9	1	32	1.43
6952313--6952342	6	4.8	6	95	4	51	13	3	0	83	0.77
6953900--6953981	42	2.0	42	85	0	110	29	31	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6954747--6954828	42	2.0	42	85	0	110	28	31	17	23	1.96
6954747--6954840	42	2.2	42	82	0	107	27	30	18	23	1.97
6955593--6955674	42	2.0	42	85	0	110	28	31	17	23	1.96
6955593--6955686	42	2.2	42	82	0	107	27	30	18	23	1.97
6953690--6961313	847	9.0	847	99	0	15189	37	21	13	27	1.91
6956439--6956520	42	2.0	42	85	0	110	28	31	17	23	1.96
6956439--6956532	42	2.2	42	82	0	107	27	30	18	23	1.97
6957286--6957367	42	2.0	42	85	0	110	28	31	17	23	1.96
6957286--6957379	42	2.2	42	82	0	107	27	30	18	23	1.97
6958133--6958214	42	2.0	42	85	0	110	28	31	17	23	1.96
6958133--6958226	42	2.2	42	82	0	107	27	30	18	23	1.97
6958980--6959061	42	2.0	42	85	0	110	28	31	17	23	1.96
6958980--6959073	42	2.2	42	82	0	107	27	30	18	23	1.97
6959827--6959908	42	2.0	42	85	0	110	28	31	17	23	1.96
6959827--6959920	42	2.2	42	82	0	107	27	30	18	23	1.97
6960674--6960755	42	2.0	42	85	0	110	28	31	17	23	1.96
6960674--6960767	42	2.2	42	82	0	107	27	30	18	23	1.97
6961880--6961910	14	2.1	15	94	5	55	45	35	6	12	1.68
6962571--6962622	3	17.3	3	95	0	95	32	0	1	65	1.04
6962678--6962716	12	3.2	12	82	7	51	25	5	0	69	1.09
6965020--6965078	18	3.3	18	80	15	68	62	10	0	27	1.27
6978291--6978328	15	2.4	16	91	8	69	13	13	5	68	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6983964--6984010	16	2.9	16	72	15	51	29	0	2	68	1.02
6984112--6984355	120	2.0	121	84	4	319	29	23	15	31	1.96
6987597--6987870	89	3.1	89	92	0	442	21	24	27	27	1.99
6987614--6987863	44	5.6	44	77	5	270	20	25	27	26	1.99
6994660--6994690	16	1.9	16	100	0	62	19	19	6	54	1.65
6995060--6995094	2	17.5	2	100	0	70	51	0	48	0	1.00
6995239--6995323	25	3.0	30	85	11	108	25	22	7	44	1.78
6996116--6996168	25	2.0	25	85	7	70	52	24	0	22	1.47
6996151--6996204	26	2.1	26	83	13	76	42	37	0	20	1.52
6996863--6996941	29	2.8	28	75	17	74	29	22	8	39	1.84
6996888--6996953	29	2.3	29	84	5	80	34	22	7	34	1.83
6997480--6997519	16	2.5	16	91	0	62	57	0	35	7	1.27
6997517--6997563	16	3.1	15	82	11	51	63	0	34	2	1.06
6997663--6997709	12	3.9	12	76	18	53	72	0	27	0	0.85
6997649--6997712	11	5.5	11	74	17	58	75	0	25	0	0.81
6997938--6997971	14	2.4	14	90	5	50	79	0	20	0	0.73
6997933--6997975	15	2.6	17	82	10	63	79	0	20	0	0.74
6998451--6998695	18	13.6	17	71	13	143	33	14	10	41	1.81
6998456--6998520	20	3.3	20	75	18	73	41	9	9	40	1.69
6998456--6998534	19	4.2	19	73	19	67	40	10	10	39	1.73
6998440--6998700	35	7.3	34	71	16	127	35	14	10	39	1.81
6998526--6998584	16	3.5	16	76	15	57	33	16	8	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6998452--6998660	39	5.7	39	75	12	115	34	14	9	41	1.78
6998475--6998672	57	3.6	57	75	15	159	33	15	10	40	1.81
6998766--6998855	20	4.7	19	72	18	80	37	12	11	38	1.78
6998786--6998873	35	2.4	36	85	10	110	36	11	9	43	1.72
6998745--6998892	18	8.2	18	68	18	85	37	9	10	43	1.71
6998798--6998890	35	2.6	34	83	9	107	37	10	8	43	1.70
7019817--7019892	38	2.0	38	92	0	125	27	14	7	50	1.71
7021571--7021604	3	11.3	3	87	0	50	64	2	2	29	1.22
7024393--7024504	42	2.7	40	86	10	145	33	1	0	65	1.03
7024393--7024478	41	2.1	41	93	4	147	30	2	0	67	1.03
7029769--7029827	27	2.2	27	84	6	75	22	15	23	38	1.92
7032639--7032669	9	3.4	9	90	0	53	25	12	22	38	1.90
7032722--7032758	9	4.1	9	92	0	65	45	13	10	29	1.77
7032972--7033031	30	2.0	31	83	9	79	20	38	0	41	1.52
7035576--7035932	109	3.3	109	93	0	633	29	15	19	35	1.93
7059508--7059604	38	2.6	37	85	6	115	30	1	0	68	0.97
7059528--7059586	13	4.4	15	77	18	60	33	0	0	66	0.92
7059508--7059604	36	2.6	38	83	9	110	30	1	0	68	0.97
7059512--7059615	47	2.3	45	79	15	115	27	0	0	71	0.93
7064503--7064561	27	2.2	27	84	6	75	22	15	23	38	1.92
7067328--7067358	9	3.4	9	90	0	53	25	12	22	38	1.90
7067412--7067448	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7067658--7067717	30	2.0	31	83	9	79	20	38	0	41	1.52
7070255--7070608	108	3.3	108	93	1	620	29	15	19	35	1.93
7084555--7084581	2	13.5	2	100	0	54	0	0	48	51	1.00
7085140--7085171	3	10.7	3	93	0	55	68	3	0	28	1.04
7089725--7089757	2	16.5	2	100	0	66	0	0	48	51	1.00
7090092--7090732	50	12.8	50	72	9	466	32	25	19	22	1.97
7090083--7090732	100	6.5	100	87	0	879	32	25	19	22	1.97
7090752--7091047	44	6.9	44	69	12	184	31	20	19	28	1.97
7090752--7091039	129	2.2	129	93	0	477	30	21	19	28	1.97
7092601--7092628	3	9.3	3	100	0	56	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222