genome.fa.s15.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  105  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33509524--33509982	47	9.8	47	93	0	722	28	30	8	32	1.87
33513366--33513504	40	3.5	38	76	7	125	24	26	23	25	2.00
33513808--33513886	29	2.7	29	84	9	99	26	32	16	24	1.96
33513868--33513970	43	2.4	43	100	0	206	26	35	15	22	1.94
33515980--33516391	47	8.8	47	91	1	612	28	30	8	32	1.87
33524374--33524444	36	2.0	35	83	8	90	39	22	9	28	1.86
33525867--33526037	60	2.8	59	75	5	182	39	15	25	19	1.91
33525902--33526013	30	3.7	30	85	0	134	41	14	26	17	1.88
33529439--33529481	3	14.7	3	85	4	52	32	6	0	60	1.23
33535708--33535857	54	2.8	54	89	2	230	20	17	19	43	1.88
33535708--33535868	81	2.0	81	87	4	236	20	16	19	43	1.88
33535709--33535876	27	6.2	27	85	6	198	21	16	18	44	1.87
33543254--33543554	47	6.4	47	92	0	485	31	8	30	28	1.88
33543673--33543751	37	2.1	37	88	4	115	25	18	30	25	1.98
33548112--33548185	27	2.8	27	83	6	89	31	22	27	18	1.98
33548264--33548333	24	2.9	24	80	0	86	47	21	2	28	1.65
33548399--33548950	27	20.5	27	84	1	633	20	18	20	40	1.92
33550956--33551016	13	4.7	13	83	0	86	29	9	26	34	1.88
33554055--33554097	19	2.3	19	87	0	68	27	2	2	67	1.15
33554713--33554875	59	2.8	57	80	10	186	42	1	3	52	1.27
33568607--33568661	24	2.2	26	81	12	71	45	0	1	52	1.11
33568799--33568893	45	2.1	45	88	1	138	32	27	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33568874--33568925	16	3.2	16	94	0	86	34	36	0	28	1.58
33569104--33569129	12	2.2	12	100	0	52	38	23	7	30	1.83
33569427--33569475	15	3.4	15	71	21	50	55	4	2	38	1.31
33569399--33569480	28	2.8	28	80	14	76	50	7	1	41	1.38
33572015--33572062	24	2.0	24	95	0	87	43	18	12	25	1.85
33572766--33572793	8	3.5	8	100	0	56	75	0	0	25	0.81
33572948--33572999	20	2.6	19	72	19	52	44	0	5	50	1.26
33573013--33573063	14	3.9	14	70	19	56	41	1	0	56	1.10
33573013--33573061	8	6.4	8	74	25	52	38	2	0	59	1.09
33573016--33573061	24	1.9	24	95	0	83	39	2	0	58	1.10
33579748--33580193	126	3.5	126	85	4	510	35	25	16	22	1.94
33579794--33580193	42	9.6	41	80	8	396	36	25	16	22	1.94
33592357--33592744	49	8.1	49	87	4	567	31	9	30	28	1.88
33592357--33592744	96	4.0	96	96	0	632	31	9	30	28	1.88
33594770--33594958	43	4.4	43	95	0	351	23	14	34	26	1.94
33594940--33595013	29	2.6	29	89	4	105	25	16	32	25	1.96
33595324--33595584	40	6.5	40	79	8	239	25	22	26	24	2.00
33595324--33595582	120	2.2	120	80	8	294	25	23	26	24	2.00
33598610--33598837	40	5.7	40	94	0	348	30	20	26	22	1.98
33602963--33603398	49	9.1	49	88	4	656	31	8	30	28	1.88
33602966--33603398	96	4.5	97	93	2	648	31	9	30	28	1.88
33602963--33603396	240	1.8	238	90	1	706	31	8	30	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33606540--33606564	12	2.1	12	100	0	50	16	8	40	36	1.77
33609179--33609220	12	3.5	12	75	12	50	64	2	9	23	1.35
33609173--33609224	24	2.2	24	100	0	104	61	5	7	25	1.45
33610900--33610945	23	2.0	23	87	4	67	63	2	0	34	1.07
33616423--33616694	40	6.8	40	93	0	454	30	20	27	22	1.98
33624347--33624396	25	2.0	25	96	0	91	28	30	8	34	1.86
33626413--33626459	24	2.0	23	84	8	60	57	0	0	42	0.98
33626476--33626541	32	2.1	31	91	2	105	62	1	0	36	1.05
33626466--33626556	25	3.4	25	80	19	119	57	1	0	41	1.06
33626724--33626812	46	2.0	46	80	8	103	39	16	5	38	1.73
33634539--33634591	6	8.8	6	78	0	61	20	0	3	75	0.96
33634545--33634591	18	2.6	18	86	6	69	21	0	4	74	0.99
33640155--33640211	6	9.7	6	78	17	57	24	0	3	71	1.01
33640155--33640211	11	4.8	12	78	16	57	24	0	3	71	1.01
33640166--33640205	19	2.1	19	86	9	55	25	0	2	72	0.97
33640161--33640212	25	2.1	24	89	10	79	25	0	1	73	0.94
33640155--33640233	12	6.8	11	75	12	61	22	0	5	72	1.04
33644959--33645003	22	2.1	21	84	12	56	48	4	8	37	1.55
33648859--33648891	13	2.5	13	95	0	57	24	21	0	54	1.45
33648885--33648941	13	4.5	13	77	2	53	31	22	3	42	1.71
33648984--33649044	25	2.4	25	83	0	86	32	24	18	24	1.97
33652953--33652986	17	2.0	17	88	11	52	38	0	47	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33655966--33656061	48	2.0	48	100	0	192	39	16	12	31	1.86
33666235--33666278	23	1.9	22	82	17	54	36	25	0	38	1.56
33666422--33666608	51	3.7	51	77	6	209	32	27	16	23	1.96
33667623--33667659	18	2.1	18	100	0	74	43	0	5	51	1.24
33669855--33670121	40	6.7	40	94	0	446	30	20	26	21	1.98
33669854--33670121	119	2.2	120	93	0	457	30	20	26	21	1.98
33673288--33673344	26	2.2	26	83	3	69	29	19	15	35	1.93
33686144--33686172	8	3.6	8	100	0	58	24	0	0	75	0.80
33688531--33688836	27	11.4	27	75	12	173	36	19	20	23	1.95
33689112--33689346	96	2.4	96	82	2	285	22	22	21	34	1.97
33689108--33689363	32	8.0	32	82	3	241	21	21	20	35	1.96
33689368--33689422	22	2.5	22	73	5	58	21	23	12	41	1.88
33693436--33693573	42	3.3	42	82	3	145	32	19	18	29	1.95
33695681--33695736	21	2.8	19	89	10	94	37	10	16	35	1.83
33695681--33695759	19	3.7	22	80	14	78	36	8	16	37	1.80
33696604--33696636	16	2.1	16	88	11	50	42	9	9	39	1.68
33702243--33702301	16	3.8	16	77	4	59	27	20	8	44	1.80
33706006--33706037	8	4.0	8	91	0	55	21	0	0	78	0.76
33715632--33715677	18	2.6	18	82	0	56	6	21	4	67	1.32
33717656--33717707	27	1.9	27	96	0	95	21	23	15	40	1.91
33719744--33719778	18	1.9	18	88	11	54	22	20	0	57	1.41
33719766--33719850	18	4.6	18	67	5	53	9	20	3	67	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33720986--33721019	17	2.0	17	94	0	59	44	14	11	29	1.81
33721654--33721703	20	2.4	21	77	12	59	30	24	14	32	1.94
33722051--33722102	27	1.9	27	96	0	95	44	15	19	21	1.87
33722760--33722814	21	2.4	22	76	14	58	25	16	16	41	1.88
33727504--33727555	22	2.3	23	81	12	65	40	25	9	25	1.85
33729556--33729649	48	2.0	48	85	4	127	39	19	4	37	1.71
33730016--33730154	54	2.6	54	96	0	260	22	26	19	31	1.98
33731625--33732125	138	3.7	138	91	2	805	40	7	5	46	1.55
33732268--33732292	12	2.1	12	100	0	50	60	16	0	24	1.36
33736863--33736905	20	2.2	20	91	0	68	30	9	16	44	1.79
33739994--33740026	10	2.9	12	82	17	52	51	33	0	15	1.43
33740687--33740731	15	2.9	15	90	3	63	28	26	2	42	1.67
33752297--33752340	12	3.7	12	93	0	70	18	4	4	72	1.19
33757086--33757353	40	6.7	40	95	0	455	30	20	26	21	1.98
33760000--33760071	15	4.7	15	82	5	81	29	23	5	41	1.77
33761179--33761206	11	2.5	11	100	0	56	60	0	0	39	0.97
33761199--33761235	5	7.4	5	100	0	74	40	0	0	59	0.97
33762581--33762682	45	2.3	45	85	0	141	20	16	19	43	1.88
33762662--33762696	6	5.8	6	86	0	52	17	22	17	42	1.88
33769438--33769497	22	2.7	22	68	2	57	60	5	15	20	1.53
33769869--33769940	29	2.5	29	88	0	108	52	0	31	15	1.43
33772850--33772899	26	1.9	26	84	8	66	30	6	6	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33773258--33773325	16	4.2	16	98	0	127	26	0	35	38	1.57
33773561--33773595	18	2.0	17	88	5	52	54	0	0	45	0.99
33773455--33773762	157	2.0	157	96	0	562	44	3	4	47	1.40
33773698--33774014	120	2.7	120	98	0	618	50	6	0	42	1.32
33778647--33778676	2	15.0	2	100	0	60	50	0	50	0	1.00
33782364--33782467	49	2.1	49	90	0	163	32	8	10	48	1.68
33785413--33785665	41	6.1	41	93	0	398	28	20	26	23	1.99
33793296--33793497	41	4.9	41	96	0	359	27	21	27	23	1.99
33794787--33794829	21	2.0	21	86	8	61	37	2	6	53	1.41
33794794--33794974	99	1.8	100	91	4	303	41	1	6	50	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222