genome.fa.s15.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  116  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37423062--37423224	42	3.9	42	86	1	193	26	19	22	31	1.98
37430170--37430205	17	2.1	17	89	5	54	19	2	11	66	1.35
37430745--37430770	11	2.4	11	100	0	52	7	7	0	84	0.77
37431977--37432016	18	2.2	18	100	0	80	30	5	15	50	1.65
37444420--37444583	58	2.8	57	81	12	176	43	1	2	52	1.25
37464043--37464158	54	2.1	54	83	0	142	29	25	24	20	1.99
37469163--37469324	43	3.8	41	76	10	146	21	18	29	30	1.97
37475874--37475918	21	2.1	22	83	4	56	57	0	4	37	1.19
37476652--37476693	21	2.0	21	85	0	57	16	14	40	28	1.88
37477838--37477979	50	2.8	50	85	5	180	23	18	27	30	1.98
37477976--37478068	45	2.1	45	89	0	141	26	20	21	31	1.98
37479671--37479764	47	2.0	47	97	0	179	28	10	18	42	1.83
37491727--37491911	40	4.7	40	80	6	198	25	25	23	24	2.00
37491727--37491911	79	2.3	82	80	7	202	25	25	23	24	2.00
37493039--37493158	56	2.1	56	98	0	231	22	23	9	45	1.81
37496419--37496452	16	2.1	17	88	5	52	38	11	0	50	1.39
37496927--37497002	38	2.0	39	92	2	127	39	9	9	42	1.69
37505028--37505118	38	2.4	39	84	3	130	32	9	10	46	1.72
37511399--37511438	6	6.7	6	100	0	80	0	15	15	70	1.18
37512940--37512983	23	1.9	23	81	9	54	34	11	9	45	1.72
37513164--37513209	19	2.4	19	92	0	74	30	34	2	32	1.70
37513280--37513351	36	1.9	38	86	8	103	30	8	5	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37522704--37522738	19	1.9	17	88	11	52	65	11	2	20	1.37
37522720--37522762	22	2.0	22	85	0	59	60	6	2	30	1.35
37523145--37523220	31	2.4	33	82	10	95	60	0	2	36	1.11
37523213--37523255	16	2.6	17	81	7	52	60	0	0	39	0.97
37524154--37524243	31	3.0	31	71	11	87	45	5	14	34	1.68
37524725--37524781	30	1.9	29	89	3	87	15	35	26	22	1.94
37527930--37527955	13	2.0	13	100	0	52	23	0	0	76	0.78
37528059--37528124	19	3.3	21	75	16	61	62	1	0	36	1.05
37528037--37528124	38	2.3	40	83	11	105	57	2	0	39	1.11
37536370--37536404	18	1.9	18	88	0	52	17	28	40	14	1.88
37539225--37539544	110	2.9	110	82	2	385	31	26	17	25	1.97
37539591--37539667	40	1.9	40	89	5	120	42	28	15	12	1.84
37539636--37539723	25	3.6	24	80	4	77	45	27	13	13	1.81
37539646--37539723	25	3.2	25	81	1	86	44	26	14	14	1.83
37544734--37544795	17	3.6	17	76	6	54	30	16	27	25	1.96
37546373--37546472	38	2.6	39	83	1	121	50	7	3	40	1.45
37549709--37549769	31	2.0	31	100	0	122	47	13	9	29	1.74
37549983--37550028	24	1.9	24	86	0	65	43	15	10	30	1.81
37551449--37551626	27	6.6	27	79	3	115	28	28	16	26	1.97
37551449--37551626	54	3.3	55	80	10	204	28	28	16	26	1.97
37551470--37551625	82	1.9	81	85	3	215	28	28	16	26	1.97
37567861--37567921	29	2.1	28	81	3	68	27	11	16	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37568201--37568425	123	1.8	123	94	0	396	29	16	21	32	1.95
37569891--37570115	123	1.8	123	94	0	396	29	16	21	32	1.95
37573225--37573267	10	4.5	10	82	11	63	48	2	6	41	1.43
37573289--37573323	18	1.9	18	94	0	61	51	2	8	37	1.47
37573251--37573377	55	2.3	56	87	6	179	45	5	9	39	1.60
37573375--37573721	29	13.2	29	73	19	236	26	0	27	45	1.56
37573414--37573501	18	5.4	17	71	18	71	28	1	25	45	1.61
37573385--37573850	47	9.1	47	72	19	346	27	0	26	45	1.57
37573432--37573897	82	5.9	81	79	15	548	27	0	26	45	1.58
37573375--37573721	98	3.3	99	76	18	350	26	0	27	45	1.56
37573716--37573879	29	5.8	29	74	23	154	26	0	27	45	1.58
37573856--37573904	18	2.7	18	93	0	80	26	2	22	48	1.61
37573900--37573963	26	2.5	26	82	7	87	37	10	3	48	1.54
37573900--37573968	25	2.7	25	82	6	86	39	10	4	46	1.58
37575056--37575080	7	3.6	7	100	0	50	60	12	0	28	1.32
37576230--37576313	29	3.1	29	62	22	74	41	0	28	29	1.56
37576207--37576316	51	2.2	51	96	0	202	41	0	29	29	1.56
37576291--37576341	22	2.3	22	87	12	86	39	0	31	29	1.57
37578575--37578612	17	2.2	17	100	0	76	26	28	5	39	1.78
37586977--37587009	17	1.9	17	93	0	57	42	9	27	21	1.83
37591701--37591733	17	1.9	17	100	0	66	42	9	30	18	1.81
37602180--37602235	28	2.0	28	100	0	112	32	28	10	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37603522--37603563	20	2.1	20	86	0	57	47	0	7	45	1.30
37608602--37608632	15	2.1	15	93	0	53	29	9	19	41	1.83
37608949--37609238	50	5.7	50	82	3	314	21	28	22	27	1.99
37612656--37612686	15	2.1	15	100	0	62	29	6	19	45	1.75
37613003--37613292	50	5.7	50	80	3	287	22	27	22	27	1.99
37618130--37618168	19	2.1	19	95	0	69	43	10	2	43	1.52
37622821--37623550	47	15.3	47	92	2	1136	30	29	8	31	1.86
37622821--37623550	96	7.6	96	93	1	1193	30	29	8	31	1.86
37622821--37623550	190	3.8	190	93	1	1203	30	29	8	31	1.86
37626084--37626128	22	2.0	22	100	0	90	31	8	31	28	1.88
37626694--37626797	52	2.0	52	98	0	199	35	11	25	26	1.90
37627165--37627190	12	2.2	12	100	0	52	38	23	7	30	1.83
37629533--37629652	61	2.0	61	91	0	195	21	27	30	20	1.98
37629799--37630023	123	1.8	123	92	1	380	30	16	21	32	1.95
37633133--37633157	10	2.5	10	100	0	50	48	0	8	44	1.32
37633219--37633259	18	2.3	18	95	0	73	29	0	21	48	1.50
37633236--37633723	29	15.9	29	75	15	387	28	0	26	45	1.57
37633219--37633347	58	2.5	47	74	23	141	29	0	24	45	1.58
37633237--37633722	58	8.4	57	74	20	429	28	0	25	45	1.57
37633323--37633788	47	9.5	47	70	22	234	28	0	25	45	1.55
37633312--37633417	23	4.5	23	72	20	85	30	0	24	45	1.54
37633413--37633461	8	6.4	8	83	4	57	16	2	34	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37633413--37633458	7	6.3	7	89	2	56	15	2	36	45	1.58
37633352--37633508	18	8.4	18	69	18	97	26	0	25	47	1.57
37633565--37633592	6	4.7	6	100	0	56	14	0	50	35	1.43
37633536--37633621	41	2.1	41	95	0	154	25	0	32	41	1.56
37633285--37633723	99	4.6	97	80	13	461	27	0	26	45	1.56
37633483--37633770	128	2.2	131	90	3	456	29	0	26	44	1.55
37633699--37633813	18	6.8	18	84	13	172	28	0	22	48	1.51
37633709--37633806	29	3.0	32	81	17	121	30	0	21	47	1.51
37633809--37633872	25	2.5	26	87	2	103	37	12	1	48	1.51
37636071--37636133	28	2.2	30	91	5	103	63	1	0	34	1.04
37636071--37636133	29	2.2	29	94	5	110	63	1	0	34	1.04
37636134--37636245	50	2.2	51	91	3	190	41	0	28	28	1.62
37636217--37636264	22	2.2	22	100	0	96	39	0	31	29	1.57
37636850--37636901	21	2.4	21	87	3	68	34	13	13	38	1.84
37636863--37636906	21	2.1	21	100	0	88	27	18	13	40	1.88
37638897--37638929	17	1.9	17	100	0	66	42	9	30	18	1.81
37643176--37643208	17	1.9	17	100	0	66	42	9	30	18	1.81
37648977--37649027	27	1.9	26	84	11	68	21	9	13	54	1.67
37661093--37661712	44	13.2	44	65	18	207	33	18	20	28	1.96
37661093--37661763	142	4.7	142	92	0	1081	33	18	20	28	1.96
37661683--37661785	44	2.4	44	76	13	108	30	19	20	30	1.97
37661683--37661853	85	2.0	85	86	4	238	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37665788--37665954	85	2.0	85	82	4	203	23	25	30	20	1.98
37667768--37667822	19	2.6	19	81	16	56	43	14	7	34	1.73
37674517--37674575	22	2.6	22	79	10	57	40	18	6	33	1.77
37679282--37679433	27	5.6	27	93	3	241	26	13	28	30	1.94
37679282--37679433	55	2.8	55	94	0	259	26	13	28	30	1.94
37701575--37701622	24	2.0	24	87	0	69	27	16	27	29	1.97
37714647--37714684	15	2.5	15	86	0	58	28	15	13	42	1.85
37719456--37719484	13	2.2	13	100	0	58	34	41	0	24	1.55
37719397--37719548	81	1.9	81	95	0	277	32	23	6	37	1.80
37729811--37729949	68	2.0	68	100	0	278	36	24	4	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222