genome.fa.s15.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  115  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37096472--37096521	15	3.1	15	85	8	64	42	0	14	44	1.44
37096490--37096527	18	2.1	18	90	0	58	47	0	13	39	1.42
37096781--37096816	17	2.0	18	89	10	56	8	5	19	66	1.38
37096819--37096879	27	2.3	27	94	0	104	47	0	9	42	1.36
37100364--37100498	29	4.5	31	72	13	93	42	17	14	24	1.87
37100424--37100502	31	2.6	30	82	7	90	44	17	16	21	1.87
37100590--37100632	19	2.3	19	95	0	77	46	16	9	27	1.77
37109806--37109869	25	2.5	24	80	14	67	32	23	17	26	1.96
37123777--37123827	16	3.2	16	80	5	59	25	27	7	39	1.83
37128441--37128565	45	2.8	45	88	0	187	26	20	10	42	1.84
37131852--37132559	353	2.0	354	93	0	1211	33	12	23	30	1.92
37140652--37140698	24	1.9	25	83	12	62	48	2	10	38	1.50
37140992--37141045	17	3.1	17	80	15	65	35	1	0	62	1.06
37142282--37142309	6	4.7	6	100	0	56	17	46	0	35	1.49
37155613--37155807	88	2.2	85	80	12	223	39	21	8	31	1.82
37155658--37155837	88	2.0	88	89	4	274	35	21	9	33	1.86
37155933--37155976	10	4.4	10	80	8	54	72	2	6	18	1.17
37155954--37156030	27	2.8	28	78	4	75	63	1	3	31	1.20
37156236--37156371	44	3.2	41	76	14	134	41	2	0	55	1.20
37157721--37157924	86	2.4	83	82	10	245	30	7	19	42	1.78
37159090--37159136	24	1.9	25	86	4	69	34	2	6	57	1.36
37159769--37159797	12	2.5	12	94	5	51	68	6	0	24	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37160975--37161196	27	8.2	27	78	6	110	29	20	12	38	1.89
37160975--37161196	54	4.1	54	83	2	250	29	20	12	38	1.89
37160978--37161196	81	2.7	81	79	5	235	29	20	12	37	1.89
37167255--37167383	37	3.5	37	91	3	199	32	4	13	48	1.63
37167280--37167377	17	5.4	17	64	13	52	33	4	13	48	1.61
37167384--37167458	9	8.1	9	85	5	96	24	10	29	36	1.89
37168644--37168718	19	4.0	18	81	8	96	57	22	5	14	1.58
37168644--37168716	38	1.9	38	88	0	110	56	23	5	15	1.60
37184575--37184626	24	2.2	24	89	0	77	55	9	1	32	1.43
37186536--37186587	24	2.2	24	89	0	77	55	9	1	32	1.43
37187022--37187056	18	1.9	18	88	0	52	2	2	22	71	1.13
37195928--37196050	50	2.5	50	82	2	149	31	11	26	30	1.91
37198088--37198143	28	2.0	28	96	0	103	17	23	3	55	1.58
37207554--37207596	20	2.2	20	88	8	63	62	2	4	30	1.28
37207553--37207589	20	1.9	20	94	5	67	62	0	5	32	1.18
37212179--37212241	22	2.8	23	85	4	83	30	0	9	60	1.28
37213441--37213498	23	2.5	24	81	13	68	55	1	0	43	1.10
37213688--37213852	71	2.3	72	83	8	196	47	5	9	37	1.60
37213995--37214142	56	2.6	56	81	7	156	57	6	4	31	1.44
37216563--37216607	22	2.0	23	86	4	65	28	4	6	60	1.42
37221171--37221226	22	2.6	23	86	8	73	10	17	7	64	1.47
37222929--37222971	18	2.2	20	88	8	63	32	4	2	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229495--37229555	21	2.9	22	78	4	72	19	24	39	16	1.92
37230217--37230265	15	3.3	15	82	5	55	81	4	2	12	0.91
37230587--37230620	10	3.4	10	91	0	50	26	2	2	67	1.19
37233444--37233638	51	3.9	50	80	4	214	23	17	27	31	1.97
37233622--37233713	45	2.1	42	80	11	98	27	15	22	34	1.94
37233635--37233729	45	2.1	45	88	0	145	27	17	23	31	1.97
37238236--37238260	2	12.5	2	100	0	50	48	0	0	52	1.00
37241340--37241403	18	3.6	18	75	8	67	48	6	29	15	1.70
37244663--37244918	127	2.0	126	83	3	318	36	3	7	52	1.47
37246824--37246849	13	2.0	13	100	0	52	46	15	7	30	1.74
37249883--37250203	161	2.0	162	90	3	504	33	14	11	40	1.82
37250104--37250271	74	2.3	74	85	7	225	37	11	13	38	1.80
37259239--37259293	17	3.2	17	73	14	58	56	14	7	21	1.63
37261215--37261372	31	5.1	31	82	3	185	43	15	10	30	1.81
37261216--37261388	61	2.8	61	81	5	188	44	15	9	30	1.79
37261197--37261383	31	6.0	31	77	5	164	44	15	10	29	1.79
37266694--37266802	23	5.0	23	82	10	122	36	22	20	20	1.95
37267858--37267889	10	3.4	10	83	16	50	53	0	0	46	1.00
37267852--37267889	18	2.1	19	95	5	69	55	0	0	44	0.99
37268046--37268082	16	2.3	17	81	13	51	48	0	0	51	1.00
37271579--37271736	31	5.1	31	81	1	156	43	16	10	29	1.81
37271561--37271737	62	2.9	61	81	4	167	44	15	10	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37271561--37271737	61	2.8	60	79	7	160	44	15	10	29	1.80
37276610--37276654	22	2.0	22	84	16	58	22	4	2	71	1.15
37319506--37319542	19	1.9	19	88	0	56	37	5	10	45	1.62
37323743--37323799	20	2.8	21	89	10	84	29	5	0	64	1.15
37323818--37323857	5	7.8	5	83	5	53	5	40	55	0	1.22
37323819--37323857	10	3.8	10	93	3	60	5	41	53	0	1.23
37324150--37324207	18	3.2	18	76	11	64	36	3	3	56	1.33
37324141--37324250	27	4.0	25	71	14	67	40	1	4	53	1.32
37324224--37324262	19	2.0	20	85	14	55	41	0	2	56	1.13
37324182--37324250	19	3.7	19	69	18	63	40	0	4	55	1.20
37326496--37326544	4	12.2	4	77	0	53	46	8	20	24	1.77
37326496--37326536	8	5.1	8	96	0	73	48	9	17	24	1.76
37328750--37328998	50	4.8	50	85	4	284	20	29	24	26	1.99
37328749--37328998	100	2.4	104	88	6	357	20	29	24	26	1.99
37329093--37329124	13	2.5	13	94	0	55	56	12	0	31	1.37
37329336--37329393	30	1.9	30	85	0	80	32	24	0	43	1.55
37334912--37334950	18	2.2	17	86	13	53	46	20	0	33	1.51
37341952--37342050	23	4.3	23	86	0	135	30	22	22	25	1.99
37343526--37343558	13	2.4	14	90	5	50	45	6	0	48	1.27
37348610--37348922	156	2.0	155	96	1	574	42	8	7	41	1.64
37349052--37349093	5	8.4	5	100	0	84	40	59	0	0	0.97
37358717--37358746	15	2.0	15	100	0	60	26	0	13	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37373865--37373906	21	2.0	21	81	9	50	35	26	9	28	1.88
37383152--37383198	7	6.6	7	76	13	51	12	2	4	80	0.94
37383160--37383205	14	3.2	14	87	6	65	10	0	8	80	0.91
37383164--37383224	25	2.3	26	81	10	63	13	1	6	78	1.01
37383328--37383358	15	2.1	15	93	0	53	16	0	16	67	1.23
37391958--37392011	21	2.6	19	77	11	54	37	3	7	51	1.48
37392502--37392531	16	1.9	16	93	6	53	36	0	13	50	1.42
37397217--37397265	26	1.9	26	88	12	75	16	14	8	61	1.56
37398134--37401660	44	79.5	44	77	6	2856	29	14	25	30	1.95
37398134--37401660	265	13.2	266	82	5	3115	29	14	25	30	1.95
37398134--37401666	309	11.4	310	81	6	3039	29	14	25	30	1.95
37399797--37399833	14	2.6	14	100	0	74	48	8	27	16	1.74
37401727--37401844	44	2.7	43	77	5	112	27	19	22	29	1.98
37403848--37403893	19	2.4	19	85	10	58	15	2	4	78	1.01
37403957--37404001	17	2.6	18	82	6	58	15	6	6	71	1.29
37404022--37404052	15	2.1	15	93	0	53	16	0	16	67	1.23
37410145--37410185	20	2.0	20	85	0	55	68	0	0	31	0.90
37410300--37410337	20	2.0	20	89	5	60	28	0	2	68	1.03
37410664--37410810	40	3.7	40	93	0	240	31	14	31	21	1.94
37410758--37411236	112	4.3	112	94	0	814	27	18	27	26	1.98
37413155--37413348	84	2.2	87	91	4	313	30	19	19	30	1.96
37415412--37415695	40	6.7	40	83	13	370	44	9	2	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37415452--37415881	57	7.5	57	82	11	495	43	10	2	43	1.53
37415386--37415859	97	4.9	97	74	20	436	43	10	2	43	1.52
37415412--37415752	177	1.9	177	99	0	673	44	10	2	43	1.51
37415831--37415872	13	3.2	13	86	0	57	40	9	2	47	1.49
37416303--37416686	7	45.0	9	63	33	83	46	20	0	33	1.53
37416318--37416678	51	6.9	50	90	5	515	46	19	0	33	1.53
37416410--37416507	32	3.2	32	91	8	154	45	21	0	32	1.52
37416318--37416678	134	2.8	134	92	5	586	46	19	0	33	1.53
37422667--37422737	21	3.4	21	82	7	90	32	18	46	2	1.63
37422961--37422994	14	2.4	14	95	0	59	11	8	20	58	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222