genome.fa.s15.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  131  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42307490--42307522	15	2.2	15	100	0	66	24	6	21	48	1.72
42312991--42313036	23	2.1	21	92	8	74	43	23	0	32	1.54
42316227--42316273	3	15.7	3	90	0	76	34	4	0	61	1.15
42320656--42320708	23	2.3	23	93	0	88	30	26	18	24	1.98
42322959--42323028	9	7.8	9	95	0	104	38	27	10	24	1.87
42323915--42327215	824	4.0	825	95	0	5874	23	14	21	40	1.91
42332060--42332094	12	2.9	12	91	0	52	0	37	22	40	1.55
42353562--42353752	51	3.8	51	74	8	169	23	17	27	31	1.97
42353761--42353850	46	2.0	44	85	8	119	24	17	25	32	1.97
42357808--42358780	43	22.7	43	73	5	633	38	20	15	25	1.91
42357810--42358780	86	11.3	86	78	5	791	38	20	15	25	1.91
42361658--42361741	29	2.8	30	90	3	143	21	42	0	35	1.53
42362007--42362044	20	1.9	20	84	10	51	23	26	0	50	1.50
42372462--42372518	26	2.1	27	87	3	80	43	17	14	24	1.86
42374531--42374560	15	1.9	15	93	6	51	40	0	0	60	0.97
42381295--42381388	37	2.5	38	77	1	100	24	13	18	43	1.86
42383354--42383431	33	2.4	33	86	0	111	14	6	34	44	1.70
42388065--42388157	37	2.5	37	80	3	98	31	15	13	39	1.86
42388829--42388884	22	2.5	23	82	5	69	41	16	7	35	1.75
42397814--42397958	20	7.2	20	65	14	75	31	14	33	20	1.93
42397793--42397994	40	5.1	40	81	0	235	32	16	31	18	1.94
42397793--42397994	80	2.5	80	87	0	289	32	16	31	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42401432--42402373	469	2.0	469	99	0	1857	33	21	17	27	1.96
42405850--42405908	25	2.4	25	85	5	75	33	23	18	23	1.97
42405861--42405957	25	3.9	25	78	8	74	38	18	21	21	1.94
42410768--42410798	3	10.3	3	92	0	53	70	0	29	0	0.87
42412939--42412988	26	1.9	26	100	0	100	38	0	12	50	1.40
42412942--42412997	26	2.2	26	86	0	76	44	3	10	41	1.56
42413149--42413196	23	2.0	23	88	4	69	52	0	10	37	1.36
42416978--42417071	22	4.2	21	76	15	82	23	25	2	48	1.62
42416978--42417076	44	2.2	45	82	7	121	25	24	2	48	1.62
42416979--42417052	11	6.6	11	76	13	62	25	27	1	45	1.61
42418224--42418249	7	3.7	7	100	0	52	26	0	15	57	1.38
42418831--42418870	18	2.2	18	90	0	62	20	30	7	42	1.79
42419289--42419470	45	4.0	45	80	11	224	38	0	13	48	1.42
42419344--42419495	25	6.3	25	79	11	183	40	0	14	44	1.45
42419306--42419492	94	2.0	94	97	0	356	40	0	13	45	1.44
42419369--42419529	70	2.3	69	95	1	286	39	0	14	45	1.45
42421877--42422101	123	1.8	123	94	0	396	34	23	15	26	1.95
42423594--42423689	36	2.6	36	79	14	106	41	1	26	31	1.62
42425562--42425591	11	2.9	10	90	9	51	60	26	0	13	1.34
42426468--42426528	20	3.0	20	85	4	77	42	22	26	8	1.81
42431777--42431898	44	2.8	44	83	2	147	31	24	16	27	1.96
42431889--42432373	128	3.8	127	93	2	801	25	23	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42434472--42434507	15	2.4	15	90	0	54	13	8	5	72	1.27
42434541--42434577	19	1.9	19	88	0	56	13	0	5	81	0.86
42434539--42434569	13	2.4	13	94	0	53	16	0	3	80	0.83
42441507--42441555	26	2.0	25	84	8	64	26	18	4	51	1.64
42442236--42442261	8	3.2	8	100	0	52	53	11	0	34	1.37
42446051--42446169	23	5.2	23	80	9	136	31	26	19	23	1.98
42446058--42446172	46	2.5	46	91	0	185	30	25	20	23	1.99
42446384--42446422	18	2.2	17	86	13	53	43	23	0	33	1.54
42447802--42447836	13	2.7	13	91	8	54	40	5	0	54	1.24
42450368--42450517	42	3.6	43	78	10	148	21	16	26	36	1.94
42455363--42455463	40	2.6	38	85	3	130	51	8	2	36	1.49
42457553--42457610	23	2.4	25	80	16	68	34	0	1	63	1.04
42457576--42457632	15	3.7	15	80	19	73	31	0	0	68	0.90
42457580--42457631	17	3.2	16	82	17	72	28	0	0	71	0.87
42459591--42460189	307	2.0	307	83	2	765	29	19	21	30	1.97
42462307--42462357	19	2.7	18	82	14	59	1	19	0	78	0.85
42482353--42482412	30	1.9	31	83	6	77	16	43	1	38	1.58
42490581--42490619	18	2.3	17	86	8	53	41	7	15	35	1.76
42491589--42491637	24	2.0	24	100	0	98	24	51	0	24	1.49
42493793--42493892	27	3.8	26	79	9	94	31	13	30	26	1.93
42498471--42498752	41	6.9	41	79	4	309	21	15	30	31	1.95
42498471--42498748	82	3.4	82	83	2	351	22	14	30	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42499114--42499160	22	2.2	21	85	11	60	23	0	27	48	1.51
42500601--42500654	20	2.7	20	76	0	54	51	1	0	46	1.11
42500979--42501003	6	4.2	6	100	0	50	16	32	36	16	1.90
42502150--42502234	44	1.9	44	81	13	104	61	5	11	21	1.51
42503014--42503049	15	2.5	14	86	8	54	44	8	0	47	1.33
42504453--42504491	21	2.0	21	85	10	55	28	5	5	61	1.39
42508444--42508501	7	8.1	7	77	11	55	39	0	3	56	1.16
42508436--42508491	23	2.4	24	82	8	71	42	0	3	53	1.18
42508443--42508497	20	2.6	21	80	8	58	41	0	3	54	1.18
42508578--42508675	43	2.3	43	82	5	119	25	21	22	30	1.99
42510475--42510509	3	11.7	3	100	0	70	0	34	0	65	0.93
42515731--42515787	17	3.4	17	73	9	53	19	5	3	71	1.19
42522346--42522406	32	1.9	32	86	0	86	55	9	6	27	1.57
42525217--42525646	82	5.4	82	85	5	515	47	11	11	29	1.74
42525269--42525670	159	2.5	162	85	3	526	47	10	11	29	1.74
42529243--42529275	17	2.0	17	88	5	50	21	6	0	72	1.05
42529252--42529276	13	1.9	13	100	0	50	16	4	0	80	0.87
42530706--42530833	46	2.8	45	86	4	166	35	10	25	28	1.90
42537555--42537682	46	2.8	45	88	4	175	35	10	25	28	1.89
42540285--42540387	51	2.0	51	98	0	197	34	20	15	29	1.93
42552752--42552794	22	1.9	23	85	4	61	55	0	2	41	1.12
42554185--42554213	5	5.8	5	100	0	58	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42556622--42556665	23	2.0	23	81	4	54	59	6	9	25	1.53
42558008--42558841	44	18.9	44	70	10	396	29	20	18	31	1.96
42558063--42558542	181	2.7	181	86	1	667	30	20	17	32	1.95
42558008--42558552	85	6.1	85	72	10	345	30	21	16	31	1.95
42558144--42558461	96	3.4	93	75	12	316	30	20	15	33	1.94
42560050--42560188	50	2.8	50	83	1	161	10	27	20	41	1.86
42569789--42569851	32	2.0	32	83	0	81	42	6	6	44	1.55
42570188--42570238	25	2.0	25	100	0	102	41	3	15	39	1.66
42576722--42577059	51	6.7	50	76	10	305	30	26	14	28	1.95
42576722--42577064	102	3.4	102	83	8	409	30	25	15	28	1.96
42576721--42577059	153	2.2	149	77	8	346	30	25	14	28	1.95
42583828--42583861	10	3.4	10	91	0	50	76	2	14	5	1.09
42583835--42583880	15	3.1	15	76	14	51	71	2	19	6	1.18
42583886--42583911	11	2.4	11	100	0	52	50	7	42	0	1.31
42584565--42584625	6	10.2	6	87	0	77	36	0	8	55	1.30
42584567--42584625	12	4.9	12	93	0	91	35	0	6	57	1.25
42591535--42591568	10	3.4	10	91	0	50	76	2	14	5	1.09
42592272--42592332	6	10.2	6	87	0	77	36	0	8	55	1.30
42592274--42592332	12	4.9	12	93	0	91	35	0	6	57	1.25
42592484--42592532	23	2.0	26	88	11	77	48	0	20	30	1.50
42597173--42597393	41	5.3	41	76	9	178	37	19	18	24	1.94
42598011--42598086	39	1.9	39	100	0	152	21	18	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42604631--42604671	22	1.9	21	85	5	55	21	2	24	51	1.60
42608980--42609283	152	2.0	152	96	0	554	29	10	22	37	1.87
42611816--42611931	43	2.7	43	74	12	112	24	20	25	30	1.99
42628033--42628279	50	4.8	50	80	7	223	28	20	27	23	1.99
42639919--42639991	36	2.0	36	100	0	146	57	10	0	31	1.33
42644758--42644808	23	2.2	23	89	0	57	41	19	7	31	1.80
42647644--42647962	158	2.0	158	95	0	575	40	9	21	28	1.85
42655562--42655955	196	2.0	196	91	0	644	30	25	13	30	1.94
42658848--42658892	17	2.7	17	80	12	58	82	2	0	15	0.77
42667475--42667519	18	2.5	18	92	0	72	31	20	8	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222