genome.fa.s15.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  166  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53114272--53114300	3	9.7	3	100	0	58	68	0	0	31	0.89
53120957--53121005	25	2.0	25	83	0	62	38	0	16	44	1.48
53121401--53121486	43	2.0	43	90	0	136	52	1	23	23	1.54
53128529--53128576	13	3.7	13	78	10	62	33	6	25	35	1.81
53128532--53128580	26	1.9	26	91	4	82	32	6	28	32	1.82
53131421--53131812	95	4.1	95	84	2	446	37	14	18	29	1.90
53133638--53133664	13	2.1	13	100	0	54	37	7	0	55	1.28
53139926--53139964	17	2.3	17	81	0	51	71	7	5	15	1.26
53143985--53144014	16	1.9	15	93	6	51	73	0	26	0	0.84
53144698--53144750	15	3.4	15	73	19	54	43	0	9	47	1.36
53144689--53144766	32	2.3	35	86	10	117	39	0	12	47	1.42
53148474--53148613	41	3.5	40	73	12	110	28	18	22	30	1.97
53153120--53153325	43	4.7	44	76	9	190	29	13	24	33	1.93
53153130--53153325	86	2.3	88	78	11	217	30	13	24	32	1.93
53153849--53153885	16	2.3	16	90	9	58	32	0	13	54	1.40
53155832--53155858	3	9.0	3	100	0	54	33	0	0	66	0.92
53161235--53161290	12	4.4	12	80	8	58	33	1	1	62	1.16
53161228--53161284	15	3.7	15	76	6	53	29	1	3	64	1.20
53170385--53170539	24	6.2	25	70	10	104	38	21	23	16	1.93
53172922--53172974	15	3.4	15	78	19	63	45	0	9	45	1.36
53172913--53173004	34	2.6	34	85	13	125	42	0	13	44	1.43
53175485--53175556	26	2.8	26	85	2	83	43	9	16	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53182388--53182440	26	2.1	26	82	6	65	50	9	1	37	1.46
53191620--53191667	20	2.3	21	86	13	64	52	6	0	41	1.27
53191617--53191668	21	2.4	22	81	18	65	51	5	0	42	1.25
53194324--53194483	87	1.8	86	82	1	203	36	25	14	23	1.93
53198744--53198791	16	3.0	16	100	0	96	37	25	12	25	1.91
53201898--53202021	24	5.2	24	75	13	105	34	23	26	15	1.94
53201912--53202076	48	3.4	47	76	10	143	36	21	25	16	1.94
53201904--53202055	72	2.1	74	88	2	227	34	22	25	17	1.95
53201912--53202055	24	5.9	24	76	8	130	35	22	25	16	1.95
53201913--53202076	24	6.6	25	75	8	113	36	21	25	16	1.94
53205031--53205148	52	2.3	53	86	5	161	58	5	2	33	1.36
53205456--53205494	13	2.9	14	80	7	53	66	0	17	15	1.25
53207704--53207753	26	2.0	25	84	7	66	52	2	6	40	1.38
53209520--53209582	31	2.0	31	100	0	126	33	3	15	47	1.62
53214939--53214996	29	2.0	29	86	0	80	34	17	25	22	1.96
53217421--53217460	20	2.0	20	85	9	55	25	5	0	70	1.08
53218402--53218456	27	2.0	29	82	10	71	50	36	3	9	1.51
53218825--53218859	10	3.5	10	92	0	52	11	0	2	85	0.69
53219551--53219586	3	11.7	3	88	5	54	33	2	0	63	1.08
53221518--53221560	13	3.5	13	81	18	65	34	0	16	48	1.46
53221516--53221560	23	2.0	23	100	0	90	35	0	15	48	1.45
53227320--53227349	12	2.5	12	94	0	51	63	0	10	26	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53230958--53231192	116	2.0	116	97	0	443	25	25	12	35	1.92
53239162--53239228	33	2.0	33	97	0	125	20	34	8	35	1.84
53242439--53242507	24	2.9	24	85	8	88	52	7	4	36	1.49
53243373--53243414	20	2.0	21	86	4	59	69	4	19	7	1.31
53243895--53243945	26	2.0	26	84	7	68	19	7	33	39	1.81
53244327--53244970	44	14.8	43	69	11	186	27	25	18	27	1.98
53244333--53244973	218	3.0	218	90	1	1011	26	26	19	27	1.98
53244973--53245230	129	2.0	129	91	0	417	25	24	18	31	1.98
53251333--53251401	24	2.9	24	85	8	88	52	7	4	36	1.49
53252775--53252831	26	2.1	28	87	9	84	17	5	35	42	1.72
53256519--53256552	5	6.8	5	100	0	68	41	0	17	41	1.50
53256637--53256690	7	7.7	7	100	0	108	57	0	0	42	0.98
53259165--53259581	208	2.0	208	97	0	780	32	23	16	27	1.96
53265108--53265146	13	3.0	13	84	0	60	61	12	10	15	1.56
53266678--53266716	14	2.9	14	80	3	53	35	23	10	30	1.88
53266764--53266864	21	4.8	21	70	21	68	19	2	30	46	1.65
53266792--53266843	22	2.5	20	79	14	52	21	3	32	42	1.71
53269445--53269978	134	4.0	134	94	0	924	22	22	28	26	1.99
53271016--53271172	63	2.5	63	78	6	149	45	16	22	15	1.85
53278728--53278863	42	3.2	42	74	0	119	45	17	21	15	1.85
53286056--53286117	27	2.2	27	82	8	70	40	6	1	51	1.37
53310512--53310574	30	2.1	30	90	0	99	26	4	11	57	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53310657--53310696	18	2.2	18	86	8	55	20	0	12	67	1.22
53323772--53323811	18	2.2	18	90	0	62	40	10	27	22	1.86
53325625--53325724	51	1.9	50	82	8	112	47	3	22	28	1.66
53325692--53325756	22	2.8	23	76	19	64	44	1	32	21	1.62
53325702--53325746	11	4.2	11	88	2	65	42	2	31	24	1.67
53328756--53328801	19	2.4	20	78	10	60	39	0	6	54	1.26
53329367--53329428	30	2.1	30	87	0	88	58	12	3	25	1.50
53330451--53330537	45	1.9	45	86	4	122	40	5	4	49	1.47
53340967--53341010	4	11.0	4	100	0	88	50	25	0	25	1.50
53346459--53346500	20	2.2	20	82	4	50	57	0	11	30	1.35
53346438--53346643	78	2.6	77	80	7	236	47	8	7	35	1.63
53352544--53352619	23	3.4	22	74	3	73	47	17	5	30	1.69
53354439--53354526	38	2.3	38	88	0	131	34	11	20	34	1.88
53360383--53360409	13	2.1	13	100	0	54	51	0	0	48	1.00
53360432--53360494	29	2.2	29	82	5	74	49	0	3	47	1.17
53360455--53360529	23	3.1	23	72	11	62	50	0	1	48	1.09
53360450--53360509	14	4.2	14	72	16	52	48	0	0	51	1.00
53360506--53360543	13	2.7	14	80	12	51	47	0	2	50	1.15
53360552--53360598	17	2.7	18	75	18	55	42	4	2	51	1.33
53361015--53361093	37	2.2	36	88	2	113	17	17	15	49	1.80
53364562--53364600	10	4.1	9	84	12	51	76	0	2	20	0.90
53365153--53365593	151	3.0	145	82	8	489	44	8	3	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53365453--53365599	52	2.8	50	78	10	127	48	7	4	39	1.53
53365575--53365623	24	2.0	24	84	4	62	55	16	0	28	1.42
53369690--53369738	21	2.2	22	82	10	64	26	10	28	34	1.89
53369699--53369744	21	2.2	21	96	0	83	30	10	23	34	1.89
53372122--53372150	11	2.6	11	100	0	58	27	6	10	55	1.59
53379483--53379565	36	2.3	36	82	2	94	43	20	2	33	1.65
53379775--53379897	43	2.8	44	80	9	128	30	26	17	25	1.97
53382311--53382388	15	5.1	15	75	17	61	38	2	0	58	1.12
53382323--53382387	17	4.1	15	75	18	53	36	3	0	60	1.13
53382346--53382389	17	2.8	17	87	12	60	38	0	0	61	0.96
53384849--53384899	25	2.0	25	96	0	93	41	19	5	33	1.76
53390708--53390767	21	2.8	21	82	2	75	33	16	11	38	1.85
53393650--53393699	17	2.9	17	93	0	91	24	26	6	44	1.76
53398188--53398237	17	2.9	17	93	0	91	24	26	6	44	1.76
53398456--53398523	28	2.4	27	76	9	64	50	0	0	50	1.00
53399135--53399209	32	2.4	31	82	6	87	62	1	6	29	1.29
53399126--53399186	25	2.5	24	79	10	70	67	1	3	27	1.16
53400918--53400961	21	2.1	21	82	0	52	15	40	20	22	1.90
53426298--53426335	19	2.0	20	84	5	51	36	5	21	36	1.76
53426506--53426530	5	5.0	5	100	0	50	20	20	20	40	1.92
53427336--53427383	24	2.0	24	91	0	78	27	2	12	58	1.46
53429308--53429337	12	2.6	12	94	5	53	23	6	0	70	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53443023--53443060	14	2.7	15	92	8	62	39	2	15	42	1.61
53445729--53445754	13	2.0	13	100	0	52	23	30	0	46	1.53
53446041--53446070	15	2.0	15	93	0	51	40	20	16	23	1.91
53447543--53447612	26	2.7	26	93	0	122	22	28	21	27	1.99
53447624--53447719	48	2.0	48	89	4	149	29	11	22	36	1.89
53451975--53452092	36	3.3	36	81	0	155	44	25	11	17	1.83
53458861--53458934	28	2.7	27	81	6	85	32	8	31	28	1.86
53459756--53459833	39	2.0	39	100	0	156	33	7	12	46	1.71
53459804--53459877	22	3.2	22	78	17	96	29	12	13	44	1.80
53459817--53459948	25	5.6	24	70	17	107	26	14	15	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222