genome.fa.s15.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  201  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63859854--63859889	13	2.8	13	91	0	54	72	0	16	11	1.12
63861116--63861539	87	4.8	87	79	12	513	28	23	24	24	2.00
63861257--63861616	180	2.0	180	100	0	720	29	23	23	23	1.99
63861340--63861617	87	3.1	88	69	21	279	29	23	22	23	1.99
63861679--63862201	139	3.7	141	90	2	838	33	17	21	26	1.96
63862057--63862145	44	2.0	44	88	0	133	30	22	23	23	1.99
63861679--63862201	281	1.9	281	93	0	902	33	17	21	26	1.96
63862247--63862455	50	4.2	50	77	6	199	33	25	19	21	1.97
63862244--63862463	100	2.2	100	91	0	350	33	25	18	21	1.96
63866780--63866818	19	2.1	18	85	4	51	35	2	15	46	1.60
63867048--63867091	23	1.9	23	100	0	88	18	18	27	36	1.94
63873426--63873501	23	3.3	23	92	0	134	22	21	25	31	1.98
63874031--63874072	11	3.8	12	78	15	54	28	30	0	40	1.57
63874128--63874168	12	3.4	12	82	0	55	36	0	0	63	0.95
63876560--63876906	121	2.8	123	87	2	491	33	22	15	27	1.95
63877400--63877441	3	14.0	3	100	0	84	66	0	33	0	0.92
63877438--63877524	44	2.0	44	95	0	156	49	17	18	14	1.80
63883371--63883423	18	2.9	19	75	10	58	37	15	1	45	1.57
63887629--63887696	34	2.0	34	100	0	136	32	20	5	41	1.76
63890007--63890075	25	2.8	25	79	0	84	15	24	21	37	1.93
63890104--63890180	25	3.1	25	81	7	93	23	25	16	33	1.96
63895861--63895954	35	2.7	35	88	0	143	38	27	11	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63895849--63895970	35	3.5	35	80	2	120	40	29	11	18	1.86
63896706--63896743	19	2.0	19	100	0	76	52	10	10	26	1.68
63896708--63896752	19	2.4	19	92	0	72	62	6	8	22	1.48
63905019--63905054	18	2.0	18	100	0	72	50	16	16	16	1.79
63910102--63910135	17	2.1	16	88	5	50	2	14	5	76	1.09
63910124--63910174	14	3.6	14	76	7	50	17	13	0	68	1.21
63910324--63910360	14	2.4	17	86	13	53	51	0	0	48	1.00
63915838--63915864	13	2.1	13	100	0	54	14	40	7	37	1.74
63924998--63925475	239	2.0	239	100	0	956	31	19	20	28	1.97
63937331--63937368	17	2.3	17	86	4	51	34	0	0	65	0.93
63938458--63938508	25	2.0	26	85	11	70	3	27	0	68	1.07
63938563--63938624	16	3.9	15	72	17	54	53	1	3	41	1.27
63938601--63938625	8	3.1	8	100	0	50	48	0	0	52	1.00
63944689--63944714	12	2.2	12	100	0	52	0	19	0	80	0.71
63944680--63944729	27	1.9	25	84	8	64	0	24	4	72	1.02
63945354--63945405	15	3.2	15	73	19	50	50	13	0	36	1.42
63950381--63950418	20	1.9	20	94	0	67	44	13	7	34	1.72
63951153--63951195	22	2.0	22	86	9	61	55	0	4	39	1.20
63952578--63952603	2	13.0	2	100	0	52	50	0	0	50	1.00
63954363--63954418	26	2.2	24	78	12	58	39	1	8	50	1.44
63954468--63954523	28	2.0	27	83	10	69	50	3	5	41	1.43
63956617--63956657	21	1.9	22	85	14	59	43	4	2	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63956730--63956769	17	2.3	18	86	4	55	27	2	5	65	1.27
63957192--63957229	15	2.5	15	87	8	51	42	2	5	50	1.39
63960699--63960734	18	1.9	19	88	5	56	55	5	5	33	1.46
63970416--63970492	39	2.0	39	100	0	154	37	15	10	36	1.82
63973606--63973651	21	2.2	21	88	0	65	36	19	15	28	1.92
63973606--63973668	21	2.9	22	75	17	60	36	15	17	30	1.91
63973714--63973757	23	2.0	22	82	13	54	31	11	20	36	1.88
63973739--63973860	23	5.0	23	68	16	68	37	13	18	30	1.89
63977672--63977742	34	2.1	34	89	0	106	30	11	15	42	1.82
63977672--63977763	34	2.7	34	79	5	105	34	10	13	41	1.79
63979142--63979223	35	2.4	36	82	12	109	39	0	4	56	1.21
63979233--63979277	17	2.6	17	96	0	81	48	4	22	24	1.68
63979618--63979657	21	1.9	21	89	0	62	65	0	2	32	1.06
63980058--63980096	21	1.9	21	89	5	62	33	2	0	64	1.08
63982053--63982109	23	2.5	23	76	0	60	45	8	1	43	1.45
63994600--63994625	11	2.4	11	100	0	52	7	26	7	57	1.54
64002158--64002213	21	2.7	21	94	0	94	30	39	8	21	1.84
64003762--64003786	10	2.5	10	100	0	50	0	8	0	92	0.40
64004345--64004386	19	2.2	18	84	16	50	19	4	7	69	1.31
64004424--64004456	16	2.0	17	88	5	50	51	0	3	45	1.16
64013038--64013064	7	3.9	7	100	0	54	14	0	0	85	0.61
64020016--64020069	27	1.9	29	92	7	94	64	0	5	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64020188--64020212	8	3.1	8	100	0	50	40	12	0	48	1.40
64022695--64022770	29	2.6	30	74	14	77	46	5	15	32	1.69
64022899--64022935	16	2.3	16	86	13	58	40	0	0	59	0.97
64023012--64023067	15	3.7	16	79	11	64	50	0	0	50	1.00
64027809--64027852	19	2.1	21	84	16	56	65	9	11	13	1.46
64031066--64031094	14	2.0	15	93	6	51	68	0	0	31	0.89
64035622--64035661	3	13.3	3	100	0	80	65	0	0	35	0.93
64044284--64044333	23	2.1	24	88	3	75	36	22	10	32	1.87
64044290--64044339	23	2.2	23	85	0	64	40	20	12	28	1.87
64046665--64046709	24	1.9	23	82	13	56	48	24	6	20	1.73
64047783--64047963	90	2.0	90	87	0	263	29	23	14	32	1.94
64051070--64051238	39	4.3	39	90	0	257	29	3	20	46	1.67
64073479--64073551	36	2.0	36	100	0	146	36	27	8	27	1.85
64084079--64084110	16	2.1	15	94	5	55	65	6	0	28	1.16
64084514--64084542	10	2.7	11	89	10	51	58	10	0	31	1.31
64085387--64085677	55	5.4	55	76	7	217	25	20	20	33	1.97
64098162--64098231	27	2.6	27	90	4	115	41	5	0	52	1.25
64098372--64098407	18	1.9	19	94	5	65	63	0	36	0	0.94
64098380--64098520	15	10.0	15	70	19	58	66	0	31	2	1.03
64098420--64098489	16	4.4	15	71	16	52	74	0	22	2	0.95
64098427--64098475	14	3.1	16	75	18	50	73	0	22	4	1.00
64098381--64098503	43	2.9	45	77	11	118	69	0	28	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64098420--64098490	33	2.2	33	81	16	87	73	0	23	2	0.97
64098477--64098520	16	2.9	15	76	6	52	59	0	40	0	0.98
64098529--64098573	20	2.4	19	85	10	65	33	0	2	64	1.06
64098539--64098580	20	2.1	20	100	0	84	30	0	4	64	1.14
64102173--64102204	3	10.7	3	93	0	55	68	28	0	3	1.04
64102176--64102207	15	2.1	15	100	0	64	68	25	0	6	1.12
64102334--64102362	10	2.7	11	89	10	51	0	27	0	72	0.85
64102452--64102536	27	3.1	27	84	0	116	17	29	27	25	1.98
64102585--64102656	27	2.7	27	85	8	103	44	1	9	44	1.45
64103470--64103511	22	1.9	22	90	9	68	52	0	2	45	1.13
64107020--64107084	27	2.4	26	80	10	76	33	24	21	20	1.97
64107025--64107077	27	1.9	27	88	3	79	33	26	22	16	1.96
64107213--64107275	22	2.9	21	76	4	63	41	19	22	17	1.90
64107269--64107471	32	6.4	32	81	2	221	38	19	20	21	1.94
64107515--64107571	27	2.1	27	84	12	73	33	22	22	21	1.97
64107643--64107724	24	3.5	23	78	5	83	45	25	8	20	1.80
64107764--64107941	27	6.6	26	79	3	167	27	19	16	37	1.93
64107759--64107929	54	3.2	53	82	1	207	27	19	18	35	1.95
64107771--64107941	81	2.1	81	82	4	211	26	19	16	37	1.93
64119016--64119053	18	2.1	18	95	0	67	0	55	0	44	0.99
64119113--64119162	25	2.0	25	88	0	73	4	30	4	62	1.32
64122493--64122545	15	3.2	15	80	17	52	54	1	1	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64122576--64122619	20	2.1	21	87	8	63	45	0	6	47	1.29
64122713--64122752	20	2.0	20	90	0	62	50	12	10	27	1.72
64122701--64122767	34	1.9	35	90	3	109	46	13	8	31	1.74
64122736--64122775	14	2.9	14	84	0	53	42	17	7	32	1.77
64130576--64130600	12	2.1	12	100	0	50	24	0	8	68	1.16
64132428--64132858	109	4.0	109	90	1	645	31	16	17	35	1.92
64137328--64137353	3	8.7	3	100	0	52	0	30	0	69	0.89
64148426--64148477	25	2.1	25	85	0	68	36	11	11	40	1.78
64158381--64158515	41	3.3	41	88	0	207	25	27	17	29	1.98
64158685--64158779	41	2.3	41	96	0	172	24	29	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222