genome.fa.s15.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  139  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45123138--45123176	19	2.1	19	100	0	78	30	5	17	46	1.70
45130033--45130217	79	2.3	82	83	7	229	24	27	22	24	2.00
45130014--45130217	40	5.1	40	81	8	229	24	27	22	25	2.00
45137773--45137937	40	4.1	40	81	6	174	25	26	22	25	2.00
45144576--45144602	13	2.1	13	100	0	54	55	0	0	44	0.99
45146155--45146180	7	3.7	7	100	0	52	26	0	15	57	1.38
45146809--45146848	18	2.2	18	86	0	53	17	30	7	45	1.76
45147400--45147451	27	1.9	27	96	0	95	42	36	1	19	1.62
45147398--45148088	22	31.8	22	82	4	805	45	27	0	26	1.59
45147421--45148088	43	15.5	43	84	3	806	45	27	0	26	1.59
45151285--45151826	126	4.3	125	85	4	689	30	23	14	31	1.95
45151276--45151826	252	2.2	250	86	3	768	30	23	15	31	1.95
45151943--45151980	9	4.2	9	87	12	60	57	21	0	21	1.40
45153356--45153386	15	2.1	15	100	0	62	32	12	16	38	1.86
45157919--45157958	19	2.1	19	90	0	62	32	0	12	55	1.38
45193268--45193318	24	2.1	24	96	0	93	11	23	19	45	1.83
45195873--45195913	12	3.3	12	93	3	64	70	14	2	12	1.26
45195873--45195913	18	2.2	19	91	4	66	70	14	2	12	1.26
45195883--45195919	18	2.1	18	89	0	56	70	13	2	13	1.28
45200485--45200635	53	3.1	52	62	31	116	45	9	11	33	1.73
45200469--45200654	92	2.0	92	96	0	345	45	9	11	33	1.73
45201381--45201418	6	6.3	6	100	0	76	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45221987--45222033	21	2.3	20	78	7	51	63	4	2	29	1.25
45222256--45222346	39	2.4	38	79	15	98	67	3	3	26	1.22
45222592--45222620	10	2.9	10	100	0	58	41	0	0	58	0.98
45222634--45222763	47	2.7	47	81	11	131	30	2	1	65	1.14
45222675--45222818	64	2.2	65	81	9	170	34	1	0	63	1.08
45222596--45222862	9	28.7	9	68	17	102	32	2	1	62	1.21
45223000--45223074	38	2.0	38	100	0	150	36	5	21	37	1.76
45233099--45233158	25	2.5	24	79	12	70	36	11	3	48	1.56
45238316--45238372	29	2.0	29	82	0	69	17	40	29	12	1.86
45240435--45240610	47	3.7	47	78	4	176	27	21	15	35	1.94
45240430--45240600	94	1.8	94	84	2	236	26	22	15	35	1.94
45241929--45241971	21	2.0	21	83	16	54	16	9	2	72	1.21
45244501--45244554	27	2.0	25	86	10	72	14	14	5	64	1.45
45245077--45245113	16	2.2	18	90	9	60	35	0	2	62	1.10
45245397--45245440	21	2.1	21	87	8	63	43	6	0	50	1.29
45256009--45256048	6	6.7	6	91	8	64	70	15	2	12	1.28
45260516--45260666	53	3.1	52	62	31	116	45	9	11	33	1.73
45260500--45260685	92	2.0	92	96	0	345	45	9	11	33	1.73
45261412--45261449	6	6.3	6	100	0	76	0	31	0	68	0.90
45270169--45270222	22	2.5	22	96	0	99	31	22	20	25	1.98
45270586--45270611	13	2.0	13	100	0	52	7	23	46	23	1.78
45271144--45271181	18	2.1	18	100	0	76	44	21	0	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45274923--45274978	19	2.9	19	89	2	85	33	7	7	51	1.56
45277145--45277170	13	2.0	13	100	0	52	46	7	0	46	1.31
45279145--45279174	15	2.0	15	93	0	51	36	20	26	16	1.93
45279250--45279566	56	5.7	56	83	1	366	37	12	21	27	1.90
45279250--45279593	112	3.1	112	87	1	467	37	11	21	29	1.89
45281916--45281960	22	2.0	22	82	0	54	51	4	2	42	1.34
45288766--45288818	20	2.7	20	81	0	70	64	5	16	13	1.47
45289068--45289287	20	10.9	20	63	10	61	58	8	14	19	1.61
45289593--45289707	20	5.8	20	78	1	106	51	12	18	18	1.76
45289593--45289720	40	3.2	41	76	7	113	50	13	16	20	1.78
45289946--45290014	20	3.4	21	75	11	65	55	11	10	23	1.66
45290334--45290381	9	5.4	9	97	2	89	35	20	10	33	1.87
45290404--45290467	20	3.3	20	65	12	62	43	15	6	34	1.72
45290427--45290521	17	5.2	17	66	14	64	50	14	3	31	1.59
45290431--45290530	20	5.3	19	67	13	73	49	15	4	32	1.63
45290377--45290548	37	4.6	37	89	1	247	49	13	4	32	1.61
45293759--45293802	21	2.1	21	87	8	63	54	4	13	27	1.58
45294154--45294178	13	1.9	13	100	0	50	16	0	44	40	1.47
45300624--45300736	60	1.9	60	84	0	154	23	15	13	47	1.81
45301116--45301290	62	2.9	62	83	5	198	47	12	17	22	1.81
45301141--45301244	33	3.2	33	67	20	85	50	14	14	20	1.77
45301116--45301290	60	2.9	61	83	6	196	47	12	17	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45301985--45302009	13	1.9	13	100	0	50	64	0	4	32	1.12
45311256--45311302	19	2.4	20	78	7	60	68	4	0	27	1.08
45313327--45313386	29	2.1	29	93	6	104	53	1	5	40	1.33
45315771--45315810	20	2.0	20	90	0	62	27	10	12	50	1.72
45315756--45315822	34	1.9	35	87	3	100	32	8	11	46	1.72
45315899--45315951	18	2.8	20	75	16	58	35	3	1	58	1.27
45317716--45317765	9	5.6	9	79	15	59	44	0	2	54	1.11
45318080--45318122	19	2.3	19	87	0	68	69	2	16	11	1.28
45318839--45318888	3	16.7	3	91	0	82	36	0	2	62	1.07
45319188--45319297	37	2.8	38	73	8	87	20	20	27	30	1.98
45321658--45321748	44	2.1	44	91	0	146	48	10	10	29	1.73
45323976--45324019	19	2.2	20	84	11	56	4	15	6	72	1.22
45324431--45324540	52	2.1	51	86	5	150	27	10	10	51	1.68
45324679--45324718	16	2.6	15	88	7	62	55	5	0	40	1.22
45324997--45325162	39	4.3	39	89	5	241	54	6	10	29	1.58
45325243--45325361	60	2.0	60	94	0	211	53	11	0	34	1.37
45325257--45325399	60	2.4	60	83	4	146	57	11	0	30	1.40
45325452--45325562	50	2.2	51	86	3	161	46	9	15	27	1.77
45328028--45328240	113	1.9	113	93	2	367	32	15	16	34	1.91
45328240--45328525	111	2.6	108	88	6	421	27	15	15	41	1.87
45328974--45329016	17	2.5	17	88	0	68	60	0	0	39	0.97
45328977--45329016	8	4.7	9	84	12	57	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45342210--45342249	20	2.0	20	85	9	55	10	22	15	52	1.71
45346067--45346110	23	1.9	22	82	17	54	38	22	0	38	1.55
45346274--45346470	51	3.9	52	79	5	206	28	28	18	23	1.98
45346282--45346466	101	1.8	101	87	3	273	29	28	18	23	1.98
45346277--45346504	101	2.2	101	79	3	262	29	27	17	25	1.97
45350500--45350582	39	2.1	39	100	0	166	60	4	14	20	1.52
45359586--45359639	28	1.9	28	100	0	108	38	20	14	25	1.91
45366308--45366367	29	2.1	29	100	0	120	45	16	3	35	1.64
45368377--45368408	13	2.4	14	94	5	57	34	6	18	40	1.76
45377194--45377400	104	2.0	105	91	0	335	28	17	25	28	1.97
45380798--45380859	33	1.9	32	90	6	99	45	8	20	25	1.79
45390847--45390894	23	2.3	19	77	19	51	52	10	8	29	1.65
45391078--45391359	22	12.8	22	70	8	171	37	18	25	18	1.93
45391146--45391350	88	2.3	88	80	1	214	38	18	24	19	1.93
45392682--45392844	30	5.3	30	73	16	120	53	14	4	27	1.61
45392834--45392882	25	2.0	25	87	0	71	51	14	2	32	1.54
45399864--45399901	18	2.1	18	95	0	67	47	23	5	23	1.72
45400130--45400164	14	2.5	14	90	0	52	42	40	0	17	1.49
45401525--45401549	13	1.9	13	100	0	50	0	8	28	64	1.22
45402270--45402312	19	2.2	20	87	4	61	27	2	16	53	1.55
45402709--45402738	4	7.5	4	100	0	60	76	0	0	23	0.78
45409202--45409387	40	4.7	40	87	5	234	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45415760--45415817	22	2.6	22	94	0	98	17	20	29	32	1.95
45416901--45416934	13	2.6	13	86	13	52	41	2	0	55	1.15
45419517--45419652	41	3.3	40	79	7	132	31	28	23	16	1.96
45419717--45419812	40	2.4	40	87	0	129	17	20	27	34	1.95
45421868--45421919	24	2.2	24	89	0	77	53	7	3	34	1.48
45427004--45427050	17	2.6	18	78	21	62	27	6	0	65	1.16
45429683--45429783	45	2.2	45	83	0	121	17	21	21	38	1.93
45431279--45431486	28	7.5	28	95	2	350	31	28	13	25	1.94
45431279--45431486	55	3.8	55	95	1	362	31	28	13	25	1.94
45431279--45431486	111	1.9	110	93	1	362	31	28	13	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222