genome.fa.s15.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  172  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55365785--55366440	352	1.9	352	92	1	1118	28	18	24	28	1.98
55366083--55366727	264	2.5	264	91	2	1047	28	18	24	28	1.98
55367583--55367622	12	3.5	11	87	12	62	10	2	0	87	0.63
55367583--55367626	17	2.7	16	86	13	63	11	2	0	86	0.66
55368276--55368355	26	3.3	24	79	8	90	36	7	5	51	1.52
55372023--55372087	33	2.0	33	96	0	121	32	9	23	35	1.86
55373539--55373584	15	3.1	15	81	9	58	21	10	6	60	1.52
55373762--55373806	18	2.6	18	86	10	58	60	11	0	28	1.31
55374199--55374239	19	2.2	19	95	0	73	46	0	36	17	1.48
55374540--55374610	32	2.3	29	81	9	88	47	2	2	46	1.31
55376762--55376800	18	2.2	17	86	13	53	33	0	20	46	1.51
55377026--55377123	23	4.3	23	90	2	162	20	21	26	31	1.98
55377028--55377116	45	2.0	45	95	0	160	19	22	26	31	1.97
55383659--55383697	18	2.2	17	86	13	53	33	0	20	46	1.51
55383923--55384020	23	4.3	23	90	2	162	20	21	26	31	1.98
55383925--55384013	45	2.0	45	95	0	160	19	22	26	31	1.97
55390543--55390581	18	2.2	17	86	13	53	33	0	20	46	1.51
55390807--55390904	23	4.3	23	90	2	162	20	21	26	31	1.98
55390809--55390897	45	2.0	45	95	0	160	19	22	26	31	1.97
55395170--55395204	17	2.0	18	88	5	54	37	0	22	40	1.55
55397134--55397172	18	2.2	17	86	13	53	33	0	20	46	1.51
55397396--55397493	23	4.3	23	90	2	162	20	21	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55397398--55397486	45	2.0	45	95	0	160	19	22	26	31	1.97
55414434--55414472	18	2.2	17	86	13	53	33	0	20	46	1.51
55414698--55414796	23	4.3	23	90	2	164	20	21	27	31	1.98
55414700--55414788	45	2.0	45	95	0	160	19	22	26	31	1.97
55420905--55420984	1	80.0	1	97	0	151	98	0	0	1	0.10
55421140--55421178	18	2.2	17	86	13	53	33	0	20	46	1.51
55421404--55421501	23	4.3	23	90	2	162	20	21	26	31	1.98
55421406--55421494	45	2.0	45	95	0	160	19	22	26	31	1.97
55428031--55428069	18	2.2	17	86	13	53	33	0	20	46	1.51
55428295--55428392	23	4.3	23	90	2	162	20	21	26	31	1.98
55428297--55428385	45	2.0	45	95	0	160	19	22	26	31	1.97
55434929--55434967	18	2.2	17	86	13	53	33	0	20	46	1.51
55435193--55435290	23	4.3	23	90	2	162	20	21	26	31	1.98
55435195--55435283	45	2.0	45	95	0	160	19	22	26	31	1.97
55438142--55438212	27	2.6	27	81	2	70	39	29	18	12	1.88
55439223--55439275	10	5.6	9	80	10	52	84	0	9	5	0.76
55439225--55439275	19	2.7	20	84	9	70	84	0	9	5	0.78
55439225--55439277	13	4.1	13	78	4	54	83	0	11	5	0.81
55452435--55452558	39	3.2	39	86	1	151	33	18	31	16	1.93
55453451--55453489	16	2.4	17	83	16	55	23	0	7	69	1.14
55470816--55470849	4	8.2	4	87	6	50	73	2	0	23	0.97
55470816--55470862	22	2.2	21	88	3	67	72	6	0	21	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55470987--55471055	26	2.7	26	80	8	70	57	4	4	33	1.38
55471096--55471145	24	2.1	24	85	7	66	64	0	8	28	1.22
55471223--55471266	17	2.6	17	85	3	63	47	0	11	40	1.39
55471385--55471420	3	12.0	3	87	0	54	63	2	2	30	1.22
55471444--55471474	7	4.4	7	100	0	62	70	0	0	29	0.87
55471688--55471785	21	4.7	21	86	8	112	42	13	8	35	1.74
55472071--55472322	128	2.0	128	80	5	285	28	21	21	29	1.98
55472637--55473004	44	8.5	44	77	6	358	28	23	18	30	1.97
55472799--55472877	38	2.1	38	88	4	115	24	22	17	35	1.95
55472675--55473004	170	1.9	170	81	4	398	29	22	17	30	1.97
55472647--55472964	126	2.5	126	87	4	431	28	22	18	29	1.97
55473018--55473326	88	3.5	88	93	0	528	19	22	28	29	1.98
55473160--55473294	43	3.1	42	67	8	117	17	25	30	25	1.97
55473086--55473312	44	5.2	44	65	8	147	19	23	30	26	1.98
55479500--55479544	22	2.1	21	87	4	63	73	6	0	20	1.05
55479647--55479705	27	2.2	26	81	9	64	59	5	3	32	1.36
55479762--55479810	23	2.1	24	85	11	66	63	0	8	28	1.23
55479886--55479929	17	2.6	17	85	3	63	47	0	11	40	1.39
55480057--55480098	3	14.0	3	89	0	66	64	2	2	30	1.19
55480414--55480458	23	1.9	24	90	4	74	44	13	6	35	1.70
55480414--55480511	21	4.7	21	86	8	112	40	14	8	36	1.75
55483516--55483628	54	2.1	54	100	0	226	38	8	14	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55491679--55491748	9	7.8	9	96	0	122	37	30	10	22	1.87
55492540--55492575	18	2.0	18	88	0	54	52	2	0	44	1.15
55492558--55492596	20	1.9	20	84	5	51	43	0	0	56	0.99
55496985--55497011	3	9.0	3	100	0	54	66	0	0	33	0.92
55499496--55499778	75	3.8	75	90	0	458	20	20	26	32	1.97
55507014--55507141	33	3.6	33	76	17	139	19	20	26	33	1.96
55507047--55507225	42	4.5	42	82	12	250	22	18	27	31	1.97
55507010--55507180	75	2.3	75	96	0	315	21	18	28	32	1.97
55507047--55507262	117	1.8	117	95	0	396	21	19	27	30	1.98
55513993--55514064	37	1.9	37	88	5	110	40	30	12	16	1.86
55520805--55520835	16	1.9	16	93	0	53	6	16	6	70	1.29
55522004--55522051	22	2.0	25	88	11	75	35	16	0	47	1.47
55523440--55523472	17	1.9	17	93	0	57	42	0	12	45	1.41
55523823--55523871	21	2.4	21	86	6	66	40	8	2	48	1.44
55523823--55523862	20	2.1	19	86	9	55	42	7	2	47	1.45
55532119--55532172	25	2.2	25	100	0	108	29	12	14	42	1.83
55552175--55552470	96	3.1	98	90	3	467	35	7	19	37	1.80
55586120--55586417	98	3.1	99	91	2	489	35	7	19	37	1.81
55590391--55590548	81	1.9	82	92	1	264	39	10	12	37	1.77
55594542--55594573	5	6.4	5	96	0	55	18	40	25	15	1.90
55596572--55596622	7	7.4	7	93	2	86	23	0	0	76	0.79
55597691--55597803	42	2.7	42	83	2	129	40	17	24	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55600848--55600950	54	1.9	54	95	0	188	34	12	10	41	1.78
55609785--55609848	33	2.0	31	87	6	92	34	0	0	65	0.93
55609803--55609849	24	2.0	23	91	8	76	34	0	0	65	0.93
55609812--55609863	21	2.3	23	83	9	63	30	1	0	67	1.02
55609854--55609941	26	3.3	26	73	17	74	25	2	4	68	1.20
55610134--55610168	17	1.9	18	88	11	54	74	2	0	22	0.95
55614396--55614439	23	1.9	23	86	9	63	70	4	6	18	1.27
55614409--55614473	18	3.6	18	74	14	53	67	7	13	10	1.41
55618969--55619014	11	4.2	11	76	20	51	63	0	2	34	1.07
55618963--55619022	30	2.0	30	87	9	86	60	0	1	38	1.07
55618963--55619014	10	4.9	11	79	11	56	57	0	1	40	1.10
55619000--55619063	33	2.0	32	93	6	112	70	0	1	28	0.97
55619048--55619100	11	4.9	11	77	8	56	62	0	5	32	1.19
55619049--55619097	22	2.2	22	85	0	62	65	0	6	28	1.16
55619060--55619108	22	2.2	22	96	0	89	57	0	6	36	1.24
55619047--55619107	11	5.5	11	75	9	54	60	0	4	34	1.18
55619070--55619126	22	2.6	22	83	10	64	61	0	1	36	1.07
55621207--55621241	16	2.1	17	89	5	54	45	2	0	51	1.16
55622878--55622902	8	3.1	8	100	0	50	48	0	0	52	1.00
55622902--55622941	20	2.0	20	95	0	71	37	2	0	60	1.11
55622906--55622949	20	2.2	20	83	0	52	34	2	6	56	1.38
55636475--55636522	16	2.9	16	84	3	60	43	18	8	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55637405--55637442	20	1.9	20	94	0	67	39	0	13	47	1.42
55637701--55637745	19	2.4	19	89	10	67	35	0	13	51	1.41
55648845--55648958	43	2.7	43	69	13	99	20	19	28	31	1.97
55651215--55651243	15	1.9	15	100	0	58	34	3	6	55	1.44
55653403--55653523	35	3.5	35	89	0	170	38	32	12	16	1.86
55661926--55662067	41	3.5	41	84	3	162	49	6	23	21	1.72
55673637--55673664	14	2.0	14	100	0	56	50	14	14	21	1.78
55676532--55676613	25	3.5	25	75	14	93	56	8	9	25	1.60
55676847--55676913	16	4.2	16	75	11	57	43	1	25	29	1.64
55677081--55677336	62	4.3	59	78	14	262	51	3	1	44	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222