genome.fa.s15.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  36  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10751742--10752088	26	13.4	25	74	12	179	29	6	4	59	1.42
10751927--10752089	75	2.2	74	83	5	195	28	6	4	60	1.43
10752038--10752085	24	2.0	23	84	4	60	29	12	4	54	1.56
10751977--10752088	49	2.2	51	79	4	120	28	7	5	58	1.46
10754923--10754948	3	8.7	3	100	0	52	34	0	0	65	0.93
10755934--10755969	17	2.1	18	89	5	56	58	2	0	38	1.13
10759137--10759269	26	5.3	24	78	12	126	30	3	2	63	1.21
10759137--10759269	50	2.6	50	82	7	144	30	3	2	63	1.21
10759137--10759275	24	5.5	24	75	11	111	29	3	2	64	1.22
10759208--10759387	88	2.0	88	81	10	208	28	3	2	65	1.22
10759297--10759417	25	4.9	25	69	15	90	27	3	4	64	1.30
10759163--10759417	138	1.8	138	82	9	324	29	3	3	62	1.30
10764469--10764501	14	2.3	15	89	5	50	27	15	33	24	1.95
10765470--10766082	44	13.5	45	71	11	315	32	17	19	30	1.95
10765472--10765965	181	2.7	182	84	3	618	33	16	20	29	1.95
10767668--10767760	24	3.6	25	81	10	116	29	3	2	65	1.20
10767662--10767760	28	3.8	27	79	12	109	28	4	2	65	1.21
10767668--10767777	26	4.2	25	80	9	114	30	3	1	63	1.22
10767668--10767810	50	2.8	50	85	7	164	30	4	2	62	1.25
10767740--10767800	22	2.8	20	77	20	59	34	3	1	60	1.23
10767688--10767806	24	4.8	25	76	11	102	30	5	1	63	1.26
10767742--10767816	26	3.0	25	74	18	68	34	4	2	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10767828--10767916	24	3.8	24	73	12	87	25	4	4	65	1.31
10767828--10767948	25	5.0	26	67	15	80	28	5	5	60	1.43
10787272--10787342	14	5.6	12	71	22	56	0	16	5	77	0.95
10787276--10787342	6	10.7	6	73	20	57	0	16	5	77	0.95
10788205--10790922	544	5.0	543	92	0	4429	33	22	14	29	1.94
10796006--10796046	19	2.1	20	86	4	57	31	9	2	56	1.45
10799574--10799611	16	2.4	16	95	0	67	36	31	0	31	1.58
10800950--10800989	21	1.9	21	94	0	71	62	0	2	35	1.09
10800951--10801079	11	12.4	11	67	24	75	61	0	2	35	1.14
10800963--10801096	40	3.3	40	89	6	207	63	0	2	33	1.12
10800983--10801016	17	2.0	17	88	0	50	70	0	0	29	0.87
10800961--10801086	41	3.2	40	86	8	195	61	0	2	34	1.14
10801063--10801108	16	2.8	17	83	6	58	60	0	0	39	0.97
10811061--10811112	16	3.2	16	91	0	77	30	0	34	34	1.58
10811308--10811342	18	2.0	17	88	5	52	54	0	0	45	0.99
10811196--10811499	156	2.0	145	89	6	455	43	2	5	47	1.41
10811456--10811500	16	2.9	16	78	18	51	53	2	0	44	1.13
10811508--10811788	15	18.9	15	64	22	62	52	1	1	44	1.18
10811520--10811563	14	2.9	16	83	16	58	50	0	0	50	1.00
10811507--10811561	17	3.3	18	76	20	57	49	1	0	49	1.11
10811459--10811586	30	4.6	29	68	20	92	49	3	0	47	1.17
10811633--10811670	14	2.7	15	88	8	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10811675--10811732	26	2.1	28	81	6	66	53	0	0	46	1.00
10811713--10811801	24	3.9	24	78	16	100	55	0	0	44	0.99
10811575--10811767	61	3.2	59	71	23	150	53	1	1	43	1.19
10811692--10811837	33	4.5	33	72	20	107	53	0	0	45	1.05
10811836--10811911	1	76.0	1	78	0	80	89	0	0	10	0.49
10811824--10811919	46	2.1	47	88	2	140	85	0	0	14	0.60
10811834--10811919	34	2.6	34	85	8	126	87	0	0	12	0.55
10811824--10811919	12	8.2	12	77	14	94	85	0	0	14	0.60
10813425--10813451	11	2.5	11	100	0	54	51	18	7	22	1.70
10815651--10815675	13	1.9	13	100	0	50	20	16	8	56	1.65
10819675--10819716	16	2.5	18	81	14	54	50	4	0	45	1.23
10830565--10830632	29	2.3	29	82	2	82	29	11	10	48	1.73
10834133--10834162	11	2.7	11	89	0	51	23	0	0	76	0.78
10846304--10846654	85	4.0	85	78	9	352	26	25	19	29	1.98
10846304--10846641	43	7.8	43	77	6	290	26	25	19	28	1.99
10846965--10847014	21	2.4	21	89	0	82	2	44	18	36	1.61
10847001--10847141	66	2.1	66	94	0	255	14	24	19	41	1.89
10850332--10850380	14	3.4	14	82	2	62	32	46	0	20	1.51
10850513--10850556	14	3.1	14	83	3	61	36	40	0	22	1.54
10850523--10850572	22	2.3	22	82	6	66	38	38	0	24	1.56
10850562--10850648	39	2.2	38	88	6	129	49	22	2	25	1.62
10850784--10851387	114	5.4	112	76	10	438	27	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10850904--10851328	215	2.0	216	84	4	561	27	20	19	32	1.97
10851199--10851478	114	2.5	114	85	4	359	23	21	21	33	1.97
10854232--10854285	27	2.0	28	88	3	83	16	24	31	27	1.96
10854158--10854627	102	4.6	102	94	0	832	18	20	30	31	1.96
10854158--10854627	205	2.3	204	95	0	832	18	20	30	31	1.96
10854542--10854592	27	1.9	26	88	4	75	11	23	33	31	1.91
10862369--10862427	29	2.0	29	96	0	109	45	13	8	32	1.74
10871533--10871567	15	2.4	15	90	4	54	48	0	8	42	1.33
10884082--10884176	49	2.0	48	89	8	149	54	11	5	28	1.58
10900404--10900466	28	2.3	28	77	2	65	44	3	4	47	1.40
10901126--10901164	16	2.3	18	86	8	55	74	2	2	20	1.06
10901853--10901915	33	1.9	33	84	12	85	33	1	11	53	1.46
10906915--10906947	17	1.9	18	88	11	52	45	0	12	42	1.41
10909533--10909567	15	2.3	15	86	13	54	68	0	2	28	1.04
10911236--10911295	3	20.0	3	96	0	111	65	0	1	33	1.03
10912573--10912598	5	5.2	5	100	0	52	19	0	0	80	0.71
10916044--10916084	11	3.7	11	80	0	55	17	14	9	58	1.62
10916121--10916183	30	2.1	30	93	0	108	25	3	14	57	1.52
10916616--10916667	28	1.9	26	88	7	77	57	9	9	23	1.60
10923766--10923804	12	3.3	12	89	10	55	53	0	0	46	1.00
10924863--10925007	76	1.9	76	82	2	184	31	19	20	28	1.97
10926663--10926784	54	2.3	54	82	2	147	18	28	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10927473--10927669	40	4.9	39	80	4	214	36	18	23	21	1.95
10927485--10927669	80	2.3	80	87	1	264	36	18	24	21	1.95
10928282--10928346	32	2.0	32	100	0	130	63	6	12	18	1.49
10930229--10930304	9	8.4	9	85	0	98	46	22	6	25	1.76
10930229--10930304	27	2.8	27	91	0	116	46	22	6	25	1.76
10930411--10930454	18	2.4	18	88	0	61	13	2	43	40	1.57
10940107--10940144	19	2.0	20	85	15	53	36	2	2	57	1.26
10940257--10940316	27	2.2	28	82	8	70	48	0	3	48	1.18
10940837--10940886	23	2.2	23	89	3	75	48	10	6	36	1.61
10942607--10942696	45	2.0	45	97	0	171	44	16	17	21	1.87
10949768--10949822	25	2.2	25	87	9	78	32	21	30	14	1.93
10950202--10950254	21	2.5	23	76	17	60	50	15	0	33	1.44
10954962--10955011	24	2.1	24	88	0	73	40	26	20	14	1.90
10955039--10955097	25	2.5	23	75	5	55	32	20	27	20	1.97
10956086--10956140	26	2.1	26	100	0	110	34	10	18	36	1.86
10963806--10963842	18	2.1	18	94	0	65	16	59	0	24	1.37
10963987--10964016	11	2.7	11	94	0	51	53	6	30	10	1.60
10965943--10966005	21	3.1	19	79	11	63	58	1	0	39	1.07
10965953--10966021	30	2.3	30	90	5	104	55	0	0	44	0.99
10966010--10966058	19	2.5	20	77	9	57	65	4	2	28	1.22
10965981--10966123	10	14.9	9	67	21	60	60	2	2	34	1.23
10966185--10966222	4	9.5	4	88	0	58	47	26	2	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966578--10966620	19	2.4	17	81	14	50	30	6	4	58	1.45
11007318--11007398	41	2.0	41	90	0	126	24	4	22	48	1.70
11010526--11010565	20	2.0	20	90	0	62	40	35	5	20	1.74
11010555--11010589	14	2.5	14	90	0	52	45	31	2	20	1.65
11010526--11010600	21	3.6	21	80	1	80	41	33	5	20	1.75
11011717--11011752	13	2.8	13	95	0	63	61	8	0	30	1.26
11014389--11014564	37	4.8	37	96	0	298	39	13	21	26	1.90
11014527--11014650	46	2.8	46	91	3	200	33	16	22	27	1.96
11022986--11023025	9	4.2	9	81	12	53	7	7	0	85	0.76
11023522--11023580	31	1.9	31	92	0	100	37	11	11	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222