genome.fa.s15.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  184  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58772175--58772211	16	2.5	15	87	12	51	78	0	18	2	0.87
58774187--58774245	12	4.9	12	72	13	50	74	1	18	5	1.09
58774373--58774475	33	3.1	34	76	5	120	44	1	23	30	1.64
58775001--58775031	14	2.2	14	94	0	53	29	3	6	61	1.37
58776810--58777107	96	3.1	94	84	3	355	38	3	17	40	1.65
58777170--58777440	126	2.2	126	89	1	409	36	15	19	29	1.92
58778749--58778937	58	3.2	59	71	15	176	46	5	5	42	1.50
58779400--58779442	18	2.4	18	80	0	50	44	9	25	20	1.81
58780053--58780182	7	18.6	7	100	0	260	56	14	0	28	1.38
58781359--58781398	13	3.3	13	73	20	50	50	0	27	22	1.50
58781355--58781406	23	2.4	21	87	12	86	46	0	25	28	1.53
58782974--58783003	5	6.0	5	100	0	60	80	0	0	20	0.72
58792301--58792357	28	2.0	28	82	0	69	38	38	3	19	1.69
58792331--58792393	20	3.0	20	80	13	74	33	38	4	23	1.76
58792331--58792393	22	3.0	20	78	13	74	33	38	4	23	1.76
58805355--58805613	29	8.9	29	71	7	150	36	14	24	24	1.93
58805438--58805640	87	2.3	86	81	2	217	37	13	24	24	1.92
58805355--58805563	116	1.8	116	84	0	292	38	14	24	22	1.92
58805355--58805608	116	2.2	116	80	2	278	36	14	24	24	1.93
58811025--58811063	20	1.9	20	84	5	51	61	2	12	23	1.43
58816568--58816732	79	2.1	79	84	0	213	32	12	9	45	1.75
58839384--58839408	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58843561--58843945	49	7.9	48	75	10	309	32	18	23	25	1.97
58843574--58843945	99	3.8	99	77	8	355	31	19	23	26	1.98
58844728--58844752	12	2.1	12	100	0	50	64	0	0	36	0.94
58856547--58856762	70	3.1	68	63	24	151	38	23	6	31	1.81
58856518--58856805	140	2.1	140	96	1	533	38	22	6	31	1.81
58864114--58864378	9	28.7	9	67	20	88	32	2	3	61	1.25
58864115--58864161	10	4.8	10	84	7	53	38	4	0	57	1.18
58864115--58864361	19	13.3	18	69	20	95	33	2	3	60	1.27
58864312--58864379	17	4.0	16	83	11	82	33	0	0	66	0.92
58869440--58869556	57	2.1	57	90	3	182	47	5	6	39	1.55
58869550--58869815	97	2.6	101	83	8	328	30	15	13	40	1.86
58872026--58872206	91	2.0	91	87	2	265	32	11	13	43	1.80
58873752--58873826	30	2.5	31	84	6	100	24	18	9	48	1.77
58875367--58875452	43	2.0	43	86	0	118	51	2	22	24	1.60
58875427--58875467	19	2.2	19	91	4	66	53	0	21	24	1.46
58876759--58876855	49	2.0	49	91	0	158	42	6	25	25	1.78
58881364--58881398	16	2.2	16	94	0	61	45	5	14	34	1.68
58891606--58891752	42	3.5	42	81	5	147	16	23	17	42	1.88
58891661--58891730	21	3.3	21	73	0	77	12	24	18	44	1.85
58895886--58895929	23	1.9	23	85	0	61	50	2	6	40	1.42
58900518--58900569	25	2.1	25	96	0	95	40	13	3	42	1.62
58900526--58900579	25	2.2	25	89	0	81	40	11	3	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58905876--58905945	3	23.3	3	97	0	131	65	0	1	32	1.01
58906040--58906077	19	2.0	19	85	10	51	28	5	18	47	1.70
58908911--58908968	28	2.1	27	87	3	80	29	25	22	22	1.99
58909077--58909134	26	2.2	26	81	0	71	39	20	18	20	1.92
58909366--58909534	81	2.1	81	87	4	243	23	14	17	44	1.85
58909328--58909534	27	7.6	27	79	7	197	21	13	18	46	1.83
58909841--58910116	27	10.2	27	81	5	173	22	14	16	46	1.83
58909855--58910116	54	4.8	54	81	6	278	21	14	17	46	1.83
58909857--58910116	81	3.2	80	83	5	299	21	14	16	46	1.83
58915787--58915844	28	2.1	27	87	3	80	25	24	24	25	2.00
58915948--58916015	26	2.6	26	100	0	136	41	26	16	16	1.88
58916219--58916423	27	7.6	27	83	2	234	20	14	20	44	1.86
58918231--58918377	46	3.2	46	86	0	186	28	17	23	29	1.97
58919082--58919119	20	1.9	20	88	0	58	55	21	0	23	1.44
58921557--58921588	10	3.0	11	90	9	57	43	0	18	37	1.51
58922100--58922191	24	3.8	24	70	8	78	15	26	22	35	1.94
58924926--58924955	3	10.0	3	100	0	60	33	0	0	66	0.92
58937827--58937858	13	2.5	13	94	0	55	28	40	25	6	1.79
58945625--58945923	33	8.4	33	66	26	123	33	26	19	21	1.97
58945615--58945823	76	2.8	76	90	0	312	32	25	19	22	1.98
58945727--58945924	101	2.0	101	89	2	308	32	25	19	21	1.97
58947679--58947726	24	2.0	23	84	4	60	14	20	22	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58949324--58949396	26	2.8	26	80	10	87	16	21	23	38	1.93
58949395--58949453	25	2.4	25	82	2	75	16	25	22	35	1.95
58951587--58951615	14	2.1	14	100	0	58	44	34	0	20	1.52
58952743--58953379	27	23.6	27	82	6	731	42	17	19	20	1.90
58953597--58953692	26	3.7	26	77	4	113	15	20	23	39	1.91
58953800--58953887	30	2.9	30	84	0	113	21	27	23	27	1.99
58954999--58955046	25	1.9	25	87	8	71	41	22	18	16	1.90
58962026--58962073	25	1.9	25	87	8	71	43	20	18	16	1.88
58962859--58962911	25	2.1	25	100	0	106	47	20	0	32	1.51
58976053--58976128	28	2.7	29	84	8	86	19	36	11	31	1.88
58976053--58976139	28	3.1	28	76	15	81	18	34	13	33	1.90
58976157--58976209	27	2.0	27	96	0	97	16	26	24	32	1.97
58976162--58976224	27	2.3	27	86	0	81	17	28	22	31	1.96
58976162--58976239	27	2.9	26	81	7	75	21	26	21	29	1.99
58981734--58981769	17	2.1	17	90	10	56	58	13	2	25	1.49
58986464--58986564	39	2.6	40	80	16	115	58	2	0	38	1.13
58986493--58986566	21	3.7	21	75	17	66	60	2	0	36	1.11
58993029--58993073	18	2.5	18	85	7	65	20	35	2	42	1.64
58994201--58994236	18	2.0	18	94	0	63	25	5	25	44	1.75
58995220--58995262	22	2.0	22	86	8	63	39	18	4	37	1.72
58995215--58995269	22	2.4	23	80	17	62	40	18	3	38	1.68
59002795--59002836	21	2.0	21	90	4	66	52	30	2	14	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59003991--59004233	29	8.4	29	70	6	118	35	19	18	26	1.95
59004028--59004304	29	9.9	28	72	8	95	36	19	17	25	1.94
59004216--59004304	26	3.4	26	87	0	124	35	21	19	23	1.95
59004215--59004326	52	2.2	52	78	3	118	36	19	18	25	1.94
59014893--59014931	14	2.8	14	88	7	53	38	20	15	25	1.92
59015368--59015405	16	2.3	17	86	4	51	63	2	0	34	1.09
59015370--59015411	19	2.0	21	86	13	61	64	2	0	33	1.07
59022116--59022364	50	4.8	50	83	4	266	20	28	24	26	1.99
59022115--59022364	100	2.4	104	86	6	339	20	28	24	26	1.99
59022459--59022490	13	2.5	13	94	0	55	56	12	0	31	1.37
59022702--59022759	30	1.9	30	89	0	89	31	24	3	41	1.71
59029706--59029954	50	4.8	50	84	4	275	20	28	24	26	1.99
59029705--59029954	100	2.4	104	87	6	348	20	28	24	26	1.99
59030049--59030080	13	2.5	13	94	0	55	56	12	0	31	1.37
59030290--59030349	30	2.0	30	87	3	86	31	23	3	41	1.71
59032832--59032861	9	3.2	9	95	4	51	60	0	3	36	1.14
59034109--59034281	9	18.2	9	67	22	61	23	4	17	54	1.61
59034142--59034289	77	1.9	75	86	2	206	23	4	17	54	1.60
59034868--59034911	20	2.2	20	84	4	54	25	2	15	56	1.51
59036997--59037056	29	2.1	29	93	0	102	28	1	16	53	1.53
59037004--59037064	16	4.0	16	79	12	74	27	1	16	54	1.52
59038961--59039026	25	2.7	25	81	4	73	21	21	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59039207--59039284	25	3.1	25	72	9	68	20	20	21	37	1.95
59040184--59040236	26	2.0	26	89	7	81	7	22	39	30	1.82
59042924--59042979	24	2.3	24	81	0	67	23	42	10	23	1.85
59047098--59047218	42	2.9	42	79	4	127	18	21	15	44	1.86
59054786--59054918	42	3.2	42	83	0	158	18	18	17	45	1.85
59054786--59054838	21	2.5	21	75	0	52	16	16	18	47	1.83
59054840--59054897	21	2.7	22	71	7	66	22	18	15	43	1.88
59057599--59057675	31	2.5	31	83	6	86	58	9	3	28	1.47
59066237--59066267	16	2.0	16	93	6	55	6	19	3	70	1.22
59071118--59071154	7	5.1	7	87	6	56	24	45	0	29	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222