genome.fa.s15.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  187  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59796097--59796133	16	2.3	16	86	13	58	40	0	0	59	0.97
59797692--59797755	6	10.7	6	100	0	128	48	34	0	17	1.47
59801675--59801752	24	3.3	23	71	16	70	35	2	2	58	1.25
59801669--59801742	13	5.8	12	73	18	53	33	2	1	62	1.18
59801675--59801742	3	22.0	3	74	16	59	33	2	1	61	1.20
59806696--59806737	7	6.0	7	80	8	50	69	2	14	14	1.30
59806696--59806737	13	3.0	14	82	10	50	69	2	14	14	1.30
59806820--59806919	42	2.4	42	93	0	164	34	12	25	29	1.91
59806820--59806931	42	2.7	42	90	2	163	33	12	25	27	1.92
59808064--59808895	44	19.1	44	76	6	588	30	14	25	29	1.95
59808064--59808506	89	5.0	89	83	3	455	30	14	24	29	1.95
59808064--59808895	133	6.4	133	85	4	901	30	14	25	29	1.95
59808379--59808602	119	1.9	119	90	1	360	29	16	23	30	1.96
59808161--59808824	177	3.9	167	80	9	572	29	15	24	30	1.95
59808231--59808895	296	2.2	300	89	3	1005	30	14	24	29	1.95
59808502--59808909	177	2.3	177	87	1	568	29	14	25	30	1.95
59810374--59810435	13	4.5	13	78	11	70	30	3	1	64	1.19
59810374--59810441	3	22.0	3	74	16	59	32	2	1	63	1.18
59813337--59813671	114	3.0	114	88	2	471	40	11	16	31	1.84
59814037--59814658	108	5.8	109	85	8	780	34	15	15	34	1.90
59814310--59814614	107	3.0	99	88	6	434	39	16	16	28	1.90
59814628--59814693	30	2.3	30	86	5	100	21	9	13	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59820603--59820828	114	2.0	111	93	4	382	23	15	16	45	1.84
59821539--59821604	25	2.6	25	80	0	78	19	30	15	34	1.93
59825169--59825441	46	6.0	46	91	3	412	28	23	9	38	1.87
59830767--59830817	25	2.0	25	96	0	93	33	33	11	21	1.90
59834371--59834418	18	2.7	17	75	9	51	35	16	4	43	1.67
59837413--59837559	39	3.8	39	85	0	186	31	31	20	16	1.95
59837414--59837559	78	1.9	78	86	0	211	32	30	20	16	1.95
59837952--59837993	17	2.4	18	84	11	52	47	14	0	38	1.44
59841371--59841410	20	2.0	20	85	9	55	47	0	10	42	1.37
59841447--59841481	15	2.5	15	90	9	56	51	11	2	34	1.53
59844034--59844094	30	2.0	30	90	0	95	31	18	22	27	1.97
59853340--59853377	20	2.0	20	89	5	60	44	0	0	55	0.99
59853963--59854056	41	2.2	41	86	3	125	34	1	0	64	1.00
59854013--59854037	13	1.9	13	100	0	50	16	0	0	84	0.63
59854138--59854174	16	2.3	16	95	0	65	10	54	32	2	1.49
59858274--59858323	25	2.0	25	100	0	100	60	0	12	28	1.32
59871042--59871153	42	2.7	42	88	5	165	30	9	30	29	1.89
59871710--59872021	43	7.0	45	70	8	176	32	19	22	25	1.98
59871692--59872346	89	7.3	89	88	1	945	30	21	23	24	1.99
59872365--59872442	41	1.9	41	81	0	93	29	23	19	28	1.98
59876440--59876591	62	2.5	62	79	8	159	38	5	13	41	1.69
59876474--59876615	62	2.3	62	80	7	153	38	5	13	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59884490--59884633	62	2.3	62	82	5	159	39	5	11	43	1.65
59886745--59886783	15	2.6	14	80	11	51	0	23	0	76	0.78
59890367--59890404	3	12.7	3	100	0	76	68	0	0	31	0.90
59898179--59898225	25	1.9	24	91	4	76	38	4	0	57	1.18
59905840--59905892	19	2.9	18	80	5	70	43	15	15	26	1.85
59907861--59907893	11	2.8	12	86	9	50	63	9	0	27	1.24
59908537--59908575	15	2.6	14	80	11	51	25	7	7	58	1.52
59910800--59910841	11	3.9	11	81	6	50	66	9	2	21	1.32
59910805--59910850	20	2.3	20	92	7	76	71	8	4	15	1.26
59910800--59910851	10	5.0	10	79	11	52	67	9	3	19	1.35
59912245--59912287	19	2.3	19	80	8	52	67	0	18	13	1.23
59934360--59935035	338	2.0	337	93	0	1165	35	16	16	31	1.91
59935480--59935551	37	1.9	37	94	0	126	20	11	18	50	1.77
59940767--59940806	3	13.3	3	100	0	80	0	32	0	67	0.91
59943988--59944050	30	2.1	31	87	3	92	65	7	3	23	1.34
59957156--59957201	20	2.2	20	92	3	74	58	2	0	39	1.10
59957173--59957258	9	9.0	9	69	11	55	61	3	1	33	1.20
59957187--59957269	20	4.2	20	71	9	62	65	4	1	28	1.21
59962716--59962870	42	3.7	42	82	6	179	15	22	16	45	1.85
59962716--59962870	84	1.8	84	82	5	197	15	22	16	45	1.85
59962717--59962870	21	7.3	21	69	5	96	15	22	16	44	1.86
59964976--59965016	21	1.9	22	85	14	59	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59964977--59965052	16	4.8	15	70	15	55	1	21	3	73	1.06
59964998--59965063	35	1.9	35	82	14	84	4	13	6	75	1.14
59967148--59967186	12	3.2	12	100	0	78	25	15	33	25	1.95
59967148--59967194	24	2.0	24	87	8	69	27	14	31	25	1.95
59967644--59967674	2	15.5	2	100	0	62	0	48	0	51	1.00
59972930--59973090	82	2.0	82	85	7	220	34	8	18	39	1.80
59973910--59974005	50	1.9	50	80	4	113	40	17	3	38	1.66
59974168--59974215	25	2.0	24	91	4	78	60	0	4	35	1.16
59977475--59977618	41	3.5	41	82	6	168	22	27	20	28	1.99
59977475--59977797	82	3.9	82	82	8	272	29	25	18	26	1.98
59977558--59977782	41	5.5	41	94	2	330	32	24	18	25	1.97
59978115--59978545	203	2.2	198	89	5	636	41	15	4	38	1.68
59979505--59979529	13	1.9	13	100	0	50	40	24	4	32	1.73
60006237--60006423	51	3.7	51	80	3	200	25	17	26	31	1.97
60006420--60006514	45	2.1	45	86	0	136	25	18	24	31	1.98
60007705--60007788	41	2.0	41	100	0	168	34	7	23	34	1.82
60009572--60009611	21	1.9	21	94	0	71	22	22	37	17	1.94
60010766--60010906	60	2.3	61	78	4	151	33	22	14	29	1.93
60010906--60011108	103	2.0	103	85	5	277	24	22	18	34	1.96
60010854--60011116	51	5.0	53	75	11	204	26	22	17	33	1.96
60013722--60013748	3	9.0	3	100	0	54	66	0	0	33	0.92
60021090--60021124	16	2.1	16	89	10	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60021395--60021431	14	2.6	15	83	12	51	21	0	32	45	1.52
60021886--60021912	7	3.9	7	100	0	54	0	0	25	74	0.83
60024653--60024704	24	2.2	24	85	0	68	53	9	3	32	1.51
60027282--60027357	23	3.3	23	88	0	116	30	26	21	22	1.99
60029239--60029290	24	2.2	24	89	0	77	55	9	1	32	1.43
60029394--60029444	22	2.3	22	83	6	68	11	11	7	68	1.39
60029616--60029669	17	3.1	17	73	10	56	35	0	3	61	1.14
60030043--60030079	18	2.0	19	89	5	58	54	18	0	27	1.44
60031128--60031181	24	2.2	24	80	3	63	53	0	3	42	1.18
60031233--60031279	19	2.3	21	82	14	62	31	0	25	42	1.55
60031244--60031299	21	2.7	21	82	15	64	28	0	26	44	1.54
60031293--60031330	19	2.1	19	85	14	53	42	2	18	36	1.64
60033128--60033197	30	2.4	29	80	7	79	60	4	2	32	1.31
60033599--60033632	17	2.1	17	88	5	52	35	0	0	64	0.94
60035772--60035827	27	2.0	27	83	10	69	41	0	5	53	1.24
60039648--60039742	41	2.3	41	98	0	181	27	20	28	24	1.99
60039919--60040095	41	4.3	41	94	0	309	28	19	28	23	1.99
60047394--60047432	18	2.0	20	85	9	55	38	0	10	51	1.36
60047776--60047951	41	4.3	41	94	0	307	28	19	28	23	1.98
60049824--60049977	71	2.2	71	83	2	184	26	22	23	27	2.00
60054348--60054386	20	2.0	20	84	0	51	41	15	12	30	1.85
60070158--60070210	25	2.2	25	82	3	63	37	18	28	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60072068--60072197	46	2.8	46	95	1	224	30	17	2	50	1.59
60074556--60074584	15	2.0	15	93	6	51	55	0	0	44	0.99
60074952--60075124	83	2.1	83	100	0	346	44	17	15	22	1.86
60079660--60079762	52	2.0	51	98	1	197	15	17	15	51	1.77
60086050--60086110	17	3.5	17	73	22	63	50	14	9	24	1.73
60086045--60086119	35	2.1	35	100	0	150	52	14	8	25	1.69
60088365--60088425	29	2.1	28	81	3	68	59	11	11	18	1.61
60089264--60089311	23	2.1	23	88	0	69	29	16	2	52	1.56
60094188--60094225	17	2.3	17	90	4	60	5	26	5	63	1.37
60094768--60094818	26	2.0	26	84	0	66	17	1	13	66	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222