genome.fa.s15.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  20  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6292922--6292989	24	2.8	24	86	2	82	47	1	30	20	1.59
6293701--6293980	94	2.9	94	80	5	303	38	3	17	39	1.69
6293920--6293944	7	3.6	7	100	0	50	12	0	40	48	1.40
6294013--6294439	126	3.4	126	92	0	694	31	19	22	26	1.98
6298325--6298384	11	5.4	11	87	2	75	45	0	31	23	1.53
6298366--6298393	12	2.3	12	100	0	56	50	0	28	21	1.49
6298325--6298395	22	3.2	20	76	20	63	46	0	29	23	1.53
6313493--6313601	54	2.0	54	96	0	200	35	22	21	21	1.96
6319957--6320266	151	2.0	152	88	0	451	26	27	17	29	1.97
6325365--6325396	14	2.4	14	94	5	57	34	18	12	34	1.89
6336804--6336839	18	1.9	19	88	5	56	58	2	5	33	1.36
6339061--6339275	112	1.9	113	92	0	360	41	13	11	32	1.81
6341070--6341118	15	3.3	15	72	16	57	26	0	10	63	1.26
6341468--6341499	16	2.0	16	93	0	55	43	34	9	12	1.75
6341615--6341780	83	2.0	83	97	0	314	39	16	9	34	1.81
6343838--6343911	19	3.8	19	78	7	94	40	10	13	35	1.80
6345244--6345440	98	2.0	98	94	0	349	28	9	23	38	1.86
6354574--6354615	22	1.9	22	85	9	59	61	9	9	19	1.53
6356528--6356569	12	3.4	13	80	9	52	30	7	2	59	1.37
6368281--6368318	20	1.9	20	88	0	58	39	7	7	44	1.63
6369085--6369259	44	4.0	44	89	1	260	26	20	10	42	1.84
6369085--6369258	89	2.0	89	91	0	285	26	20	10	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6369656--6369700	16	2.6	17	79	10	56	35	0	0	64	0.94
6369729--6369785	20	2.8	19	77	15	53	40	1	1	56	1.20
6369754--6369808	20	2.7	20	77	2	56	36	0	0	63	0.95
6369822--6369879	30	2.0	30	87	12	86	31	1	0	67	1.01
6369834--6369883	20	2.6	19	84	6	73	34	0	0	66	0.92
6369834--6369879	10	4.7	10	81	2	58	34	0	0	65	0.93
6370003--6370035	16	2.1	16	100	0	66	36	6	33	24	1.80
6370358--6370432	29	2.5	31	75	12	75	53	2	0	44	1.14
6370284--6370470	60	3.1	60	72	21	201	52	5	1	41	1.31
6373660--6373706	19	2.5	19	86	3	60	48	0	0	51	1.00
6374813--6375195	43	8.9	43	90	0	586	24	28	16	30	1.97
6375520--6375582	21	3.0	21	90	0	90	0	41	22	36	1.54
6377899--6378028	9	15.3	9	77	15	116	36	0	17	44	1.55
6377894--6377973	25	3.2	25	96	0	142	35	1	20	43	1.60
6377924--6378028	34	3.1	34	81	8	133	37	0	17	44	1.55
6377908--6378171	59	4.4	59	75	15	218	39	1	13	44	1.55
6378016--6378200	34	5.6	34	79	16	194	42	2	10	44	1.51
6378084--6378212	9	15.2	9	67	17	71	41	0	13	45	1.43
6378085--6378153	25	2.8	25	88	0	93	43	0	11	44	1.40
6378055--6378187	59	2.3	59	93	2	223	42	0	11	45	1.39
6377908--6378249	180	1.9	180	94	0	603	40	2	13	44	1.56
6379693--6379722	13	2.2	14	94	5	53	56	16	13	13	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6381284--6381552	7	36.9	7	70	13	96	43	31	2	23	1.67
6382741--6382890	41	3.7	41	86	3	212	24	30	20	26	1.98
6382739--6382915	82	2.2	83	80	9	211	25	28	19	26	1.98
6384082--6384298	41	5.3	41	90	0	335	24	27	18	29	1.98
6385806--6385830	13	1.9	13	100	0	50	68	24	0	8	1.16
6387903--6388005	41	2.5	40	81	9	145	27	26	22	24	2.00
6388058--6388188	40	3.3	39	80	10	149	22	24	22	31	1.98
6387771--6388161	154	2.5	151	80	6	421	29	24	19	26	1.99
6388085--6388229	40	3.6	39	81	3	139	22	24	23	30	1.99
6388058--6388228	80	2.1	80	79	6	186	22	23	22	30	1.99
6389380--6389422	18	2.3	19	84	8	61	44	0	0	55	0.99
6393071--6393115	18	2.6	18	86	10	58	42	6	15	35	1.73
6394549--6394575	12	2.2	12	100	0	54	0	7	7	85	0.75
6395758--6395831	5	14.8	5	72	8	53	5	22	18	52	1.66
6395758--6395805	20	2.4	20	80	13	62	2	22	18	56	1.52
6398045--6398112	23	2.8	24	80	14	70	32	17	26	23	1.97
6405242--6405321	40	2.0	40	97	0	151	40	16	12	31	1.85
6411317--6411401	39	2.2	38	77	10	91	65	2	1	30	1.12
6411317--6411409	10	9.6	9	76	19	73	66	2	1	30	1.10
6411326--6411411	28	2.9	28	81	10	84	66	2	2	29	1.16
6414473--6414515	22	2.0	22	95	0	77	44	25	11	18	1.84
6414750--6414786	18	2.0	19	89	5	58	45	29	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422258--6422451	96	2.0	96	96	0	361	34	11	15	38	1.84
6424831--6424874	18	2.4	19	84	3	54	43	0	13	43	1.44
6424943--6425332	46	8.6	46	94	1	646	33	15	22	28	1.95
6427829--6427863	17	2.0	18	88	5	54	14	0	20	65	1.26
6428963--6429012	23	2.2	23	85	0	64	36	16	18	30	1.92
6429066--6429236	23	7.3	23	74	3	144	39	14	20	25	1.90
6429049--6429236	47	4.0	47	94	0	313	39	14	19	25	1.90
6429053--6429220	24	7.1	24	74	4	162	39	14	19	26	1.91
6430078--6430201	43	2.9	42	78	9	126	29	27	18	24	1.98
6436133--6436182	23	2.2	23	85	0	64	36	16	18	30	1.92
6436236--6436406	23	7.3	23	73	6	137	39	14	19	26	1.90
6436219--6436406	47	4.0	47	93	0	304	39	14	19	26	1.90
6436223--6436390	24	7.1	24	73	4	153	39	14	19	26	1.90
6437255--6437368	43	2.7	44	78	13	130	27	27	21	23	1.99
6438521--6438549	14	2.0	15	93	6	51	51	20	0	27	1.47
6440775--6440883	36	3.0	36	93	0	191	27	20	14	37	1.92
6440847--6440965	46	2.6	46	94	0	202	28	21	12	36	1.90
6442589--6442635	24	1.9	24	86	4	67	36	0	38	25	1.56
6443638--6443993	27	13.2	27	81	3	351	44	20	15	19	1.86
6443638--6443993	81	4.4	79	83	3	408	44	20	15	19	1.86
6444228--6444304	26	3.0	26	84	3	102	16	22	25	35	1.95
6444397--6444490	28	3.4	28	81	7	120	23	24	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6447124--6447471	27	12.9	27	79	1	320	44	20	14	19	1.87
6447113--6447471	109	3.3	109	79	5	370	44	20	14	20	1.86
6447726--6447775	26	2.0	24	81	11	57	16	18	26	40	1.90
6447878--6447969	28	3.3	28	83	7	116	25	21	22	30	1.99
6449607--6449682	23	3.3	23	90	1	118	30	26	21	22	1.99
6458118--6458177	30	2.0	30	93	0	102	50	15	3	31	1.60
6463452--6463555	49	2.1	49	92	0	172	31	7	8	51	1.61
6464937--6464979	21	2.0	21	86	8	61	34	0	6	58	1.25
6465008--6465208	28	6.9	28	67	19	83	42	0	3	53	1.21
6464944--6465182	119	2.0	119	97	1	453	42	0	4	51	1.28
6465114--6465161	18	2.7	18	87	6	62	43	0	2	54	1.12
6467090--6467130	18	2.2	20	82	8	50	65	7	0	26	1.18
6470320--6470383	31	2.0	33	93	6	114	31	17	9	42	1.81
6471267--6471308	19	2.2	19	86	4	57	40	0	9	50	1.35
6473088--6473128	18	2.2	18	87	12	57	65	9	2	21	1.34
6482224--6482289	24	2.8	24	86	2	89	7	13	30	48	1.70
6482224--6482338	23	4.8	24	72	5	90	8	16	28	46	1.77
6490144--6490208	27	2.4	27	81	0	76	49	35	7	7	1.60
6490162--6490217	21	2.7	21	80	0	58	53	30	8	7	1.59
6492841--6492886	24	1.9	24	91	8	76	39	0	0	60	0.97
6492983--6493010	9	3.1	9	100	0	56	57	10	0	32	1.33
6492953--6493162	68	3.1	68	96	1	379	45	9	5	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6493051--6493078	9	3.1	9	100	0	56	57	10	0	32	1.33
6493151--6493192	16	2.6	16	92	0	66	42	7	2	47	1.43
6511242--6511283	14	2.9	14	82	3	57	42	14	7	35	1.73
6512012--6512061	13	3.7	13	76	10	55	38	0	2	60	1.09
6515278--6515334	28	2.0	28	90	6	89	36	10	26	26	1.89
6516327--6516396	35	2.0	35	94	0	122	35	15	14	34	1.88
6517732--6517763	15	2.1	15	100	0	64	50	12	12	25	1.75
6518143--6518276	58	2.3	58	81	2	144	40	13	26	20	1.89
6519608--6519646	16	2.5	16	83	4	53	23	2	10	64	1.37
6521260--6521307	17	2.8	16	78	12	51	37	0	16	45	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222