genome.fa.s15.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  121  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39261893--39262035	41	3.5	41	83	3	180	30	28	20	20	1.98
39262083--39262205	40	3.1	40	73	10	110	19	19	22	38	1.94
39268622--39268659	17	2.2	18	85	4	51	52	0	0	47	1.00
39268701--39268795	34	2.8	32	80	12	102	52	1	3	43	1.24
39268713--39268795	34	2.4	34	85	2	121	54	1	2	42	1.21
39268736--39268794	19	3.3	19	77	20	72	54	1	0	44	1.10
39268732--39268778	15	2.9	15	80	20	58	48	0	0	51	1.00
39269499--39269543	13	3.2	15	76	23	53	53	0	2	44	1.13
39269499--39269554	26	2.2	26	84	12	71	51	1	1	44	1.22
39269541--39269589	22	2.3	22	86	10	66	46	6	0	46	1.27
39270162--39270229	20	3.5	20	67	15	52	47	1	1	50	1.19
39273752--39273804	22	2.4	22	84	9	72	22	24	3	49	1.66
39275655--39275693	18	2.2	18	85	0	51	17	30	7	43	1.77
39279344--39279581	126	1.9	126	92	0	397	25	20	19	34	1.96
39281019--39281080	30	2.1	30	100	0	124	45	12	12	29	1.80
39283990--39284085	23	4.2	23	80	0	111	26	20	23	29	1.99
39285221--39285360	49	2.9	49	90	0	226	26	12	27	33	1.93
39288185--39288247	33	1.9	33	87	12	94	74	3	22	0	0.96
39290062--39290098	19	1.9	19	89	10	58	56	5	0	37	1.22
39290061--39290111	25	2.0	25	84	7	66	52	3	0	43	1.19
39290089--39290126	17	2.2	17	100	0	76	52	0	0	47	1.00
39294482--39294510	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39295934--39296001	20	3.7	19	72	20	72	44	2	17	35	1.64
39320803--39320844	19	2.2	20	86	4	59	21	0	40	38	1.53
39328066--39328211	37	3.9	37	95	1	240	26	30	19	23	1.98
39328422--39328857	47	9.1	47	88	5	611	26	30	12	30	1.93
39328422--39328835	198	2.1	194	90	4	660	26	30	12	30	1.93
39331032--39331210	85	2.1	85	97	0	340	26	27	8	37	1.85
39332682--39332726	23	2.0	22	83	12	56	28	2	2	66	1.15
39344461--39344501	17	2.4	18	88	8	59	46	2	26	24	1.65
39346699--39346756	29	2.0	29	100	0	116	37	17	17	27	1.92
39349302--39349579	50	5.5	50	79	5	326	24	16	28	30	1.97
39349299--39349581	101	2.8	101	97	0	530	24	16	28	30	1.97
39349585--39349670	45	1.9	45	92	0	145	25	17	24	32	1.97
39351254--39351293	15	2.7	15	100	0	80	40	12	27	20	1.88
39360544--39360590	5	9.6	5	82	13	62	59	17	2	21	1.47
39373132--39373165	13	2.5	13	90	4	50	32	0	5	61	1.20
39373641--39373681	22	1.9	22	85	5	57	39	4	0	56	1.21
39378162--39378186	5	5.0	5	100	0	50	0	20	0	80	0.72
39380359--39380921	198	3.0	194	91	6	910	41	11	15	32	1.82
39388146--39388235	6	15.2	6	97	2	173	33	0	16	50	1.46
39392142--39392173	15	2.1	15	100	0	64	40	25	6	28	1.79
39397282--39397315	16	2.1	16	89	10	52	64	0	5	29	1.17
39398404--39398451	24	2.0	24	100	0	96	37	12	0	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39399090--39399118	14	2.0	15	93	6	51	31	0	0	68	0.89
39400972--39401098	62	2.0	62	92	0	209	28	33	18	19	1.95
39402399--39402442	21	2.1	21	100	0	88	36	25	4	34	1.76
39403203--39403249	18	2.4	19	79	17	51	55	2	4	38	1.31
39420825--39420851	6	4.5	6	100	0	54	29	0	37	33	1.58
39421669--39421704	18	1.9	18	88	5	54	30	5	22	41	1.76
39422992--39423086	45	2.1	44	86	1	127	34	4	4	56	1.38
39425925--39425974	16	3.1	16	81	16	59	64	2	4	30	1.23
39426150--39426182	6	5.7	6	85	7	50	15	0	0	84	0.61
39426151--39426182	17	1.9	16	93	6	55	15	0	0	84	0.63
39436019--39436062	18	2.4	19	81	11	56	47	13	18	20	1.82
39436042--39436144	43	2.3	44	85	3	136	41	14	18	25	1.88
39437347--39437403	30	1.9	29	86	10	80	49	5	0	45	1.24
39437496--39437539	16	2.6	16	79	10	52	47	4	0	47	1.22
39438712--39438755	22	2.0	22	95	0	79	45	15	9	29	1.77
39445779--39445821	4	10.5	4	80	5	50	18	2	4	74	1.10
39445779--39445821	17	2.6	17	92	3	70	18	2	4	74	1.10
39446532--39446589	25	2.3	26	79	8	66	27	5	5	62	1.38
39448468--39448690	40	5.6	39	82	5	216	27	27	20	24	1.99
39448466--39448690	80	2.8	79	82	6	240	27	28	20	24	1.99
39448468--39448690	120	1.9	119	83	4	288	27	27	20	24	1.99
39456377--39456598	40	5.6	39	82	6	207	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39456375--39456598	80	2.8	79	82	6	231	27	28	20	24	1.99
39456377--39456598	120	1.9	118	82	5	277	27	27	20	24	1.99
39476657--39476686	15	2.0	15	93	0	51	40	10	20	30	1.85
39477289--39477349	25	2.4	25	81	10	63	32	3	8	55	1.45
39477982--39478013	7	4.4	7	96	4	55	40	0	0	59	0.97
39478439--39478472	17	2.1	16	88	5	50	35	5	0	58	1.22
39478631--39478730	5	19.6	5	84	13	98	35	0	3	62	1.11
39478640--39478742	52	2.0	52	88	3	154	34	0	4	60	1.18
39478893--39478925	18	1.9	17	88	11	50	45	0	0	54	0.99
39480529--39480568	13	3.2	13	82	3	55	32	7	0	60	1.25
39487401--39487438	18	2.1	18	90	0	58	42	21	15	21	1.89
39487791--39487831	18	2.3	18	86	0	55	34	7	9	48	1.64
39491315--39491352	10	3.9	10	89	3	60	34	0	0	65	0.93
39491320--39491382	10	6.3	10	81	7	58	28	3	3	65	1.24
39494536--39495364	309	2.7	304	74	10	861	27	23	19	28	1.98
39494619--39495095	177	2.7	177	94	0	812	28	23	19	29	1.98
39495108--39495420	44	7.1	44	63	15	135	28	24	19	27	1.99
39494972--39495491	132	3.9	132	94	1	907	28	23	19	28	1.98
39495108--39495673	88	6.4	87	63	12	215	28	24	19	28	1.98
39495207--39495802	309	1.9	309	92	0	996	27	24	19	28	1.98
39494980--39495628	264	2.5	263	84	5	670	28	24	19	28	1.98
39495545--39496064	132	3.9	132	90	2	821	29	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39494536--39496487	441	4.4	437	79	7	1808	28	23	19	28	1.98
39495553--39496201	264	2.5	261	81	7	598	29	23	18	28	1.98
39495780--39496373	309	1.9	309	89	2	917	28	23	18	29	1.98
39496118--39496939	132	6.2	131	89	2	1191	28	23	18	29	1.98
39494796--39496618	573	3.2	573	96	0	3380	28	23	19	28	1.98
39496855--39496950	44	2.2	45	82	1	113	25	30	17	27	1.97
39498248--39498289	7	6.0	7	79	20	52	14	16	0	69	1.20
39503071--39503130	28	2.1	27	87	6	84	11	3	45	40	1.57
39503548--39503689	34	4.4	33	77	7	123	40	1	13	44	1.52
39503774--39504294	126	4.1	125	85	4	706	36	17	17	28	1.93
39510452--39510567	33	3.5	33	76	7	99	28	25	14	31	1.95
39513669--39513837	78	2.2	78	81	6	191	37	2	17	42	1.65
39529351--39529397	24	2.0	24	84	16	62	31	0	17	51	1.46
39538992--39539031	13	2.9	14	92	7	73	57	7	0	35	1.27
39539050--39539175	54	2.3	54	93	0	216	43	14	10	31	1.79
39539114--39539152	19	2.1	19	95	0	69	48	12	10	28	1.74
39539236--39539281	9	4.8	10	84	10	60	23	2	21	52	1.58
39539236--39539281	19	2.4	19	85	7	58	23	2	21	52	1.58
39542109--39542343	51	4.7	50	78	10	221	27	17	26	28	1.98
39545222--39545275	9	5.9	9	79	12	65	24	9	29	37	1.86
39545212--39545277	20	3.5	19	78	19	75	22	7	27	42	1.80
39545240--39545274	17	2.1	17	94	0	61	22	11	31	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39545434--39545458	12	2.1	12	100	0	50	16	24	36	24	1.94
39550061--39550294	51	4.7	50	78	11	221	27	17	26	28	1.98
39553172--39553225	9	5.9	9	79	12	65	24	9	29	37	1.86
39553162--39553227	20	3.5	19	78	19	75	22	7	27	42	1.80
39553190--39553224	17	2.1	17	94	0	61	22	11	31	34	1.90
39553384--39553408	12	2.1	12	100	0	50	16	24	36	24	1.94
39558191--39558375	50	3.7	49	87	7	232	29	16	25	28	1.97
39558141--39558375	51	4.7	49	80	8	233	27	17	26	28	1.97
39578007--39578194	40	4.7	40	93	0	295	31	19	26	22	1.98
39586639--39586826	40	4.7	40	95	0	313	30	20	26	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222