genome.fa.s15.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  200  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63609310--63609593	91	3.0	93	86	6	317	47	3	3	45	1.37
63609410--63609470	28	2.2	28	85	5	81	50	3	0	45	1.17
63609417--63609560	47	3.1	46	65	23	113	49	4	2	44	1.33
63609385--63609597	91	2.3	91	95	0	372	46	4	3	46	1.40
63609435--63609574	47	3.0	47	67	17	139	48	4	2	44	1.37
63613164--63613279	19	5.6	19	67	16	70	34	2	0	62	1.15
63613172--63613300	42	3.1	42	92	3	206	32	3	0	63	1.15
63613234--63613316	31	2.7	31	85	7	98	36	2	1	60	1.18
63616619--63616885	106	2.5	106	92	1	430	26	20	11	41	1.85
63620717--63620924	91	2.3	91	89	2	310	45	3	3	47	1.39
63620749--63620892	47	3.1	46	65	22	104	43	2	4	49	1.36
63620757--63620899	44	3.2	43	66	18	103	45	2	3	48	1.34
63620978--63621174	66	3.2	63	68	21	173	42	3	6	47	1.45
63620940--63621237	120	2.5	120	92	1	490	42	3	5	48	1.40
63621013--63621200	61	3.1	61	69	17	192	43	2	6	47	1.43
63621194--63621235	15	2.7	16	82	14	52	45	0	2	52	1.13
63621185--63621226	15	2.9	15	82	10	52	47	0	0	52	1.00
63621361--63621470	45	2.6	44	76	8	113	32	27	5	34	1.80
63621449--63621502	16	3.4	16	89	0	81	27	33	1	37	1.68
63622820--63622877	31	1.9	31	89	3	91	51	6	1	39	1.39
63626588--63626636	15	3.4	15	83	10	59	42	0	2	55	1.11
63626524--63626752	119	1.9	120	99	0	451	41	1	6	49	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63626714--63626755	15	2.7	16	82	14	52	45	0	2	52	1.13
63626705--63626746	15	2.9	15	82	10	52	47	0	0	52	1.00
63626900--63626990	45	2.0	44	85	2	119	35	28	5	30	1.80
63626971--63627022	16	3.2	16	88	0	77	36	34	0	28	1.58
63630985--63631009	12	2.1	12	100	0	50	84	0	0	16	0.63
63631063--63631132	27	2.6	27	76	0	77	25	31	31	11	1.91
63631504--63631868	161	2.3	159	87	7	540	27	7	9	55	1.58
63631846--63631917	34	2.2	31	80	9	81	15	11	6	66	1.42
63632000--63632054	27	2.0	28	82	3	67	10	34	29	25	1.90
63632037--63632068	16	2.0	16	100	0	64	25	37	12	25	1.91
63637222--63637882	329	2.0	329	99	0	1295	30	12	20	36	1.89
63642350--63642558	92	2.3	91	84	5	251	45	3	5	44	1.44
63642574--63642986	120	3.4	120	94	2	697	42	2	5	49	1.38
63642699--63642750	15	3.6	15	80	12	56	44	0	1	53	1.11
63642819--63642870	15	3.6	15	80	12	56	44	0	1	53	1.11
63642948--63642989	15	2.7	16	82	14	52	45	0	2	52	1.13
63642939--63642980	15	2.9	15	82	10	52	47	0	0	52	1.00
63643092--63643126	18	2.0	17	88	5	52	45	0	0	54	0.99
63642923--63643239	157	2.0	157	95	0	571	47	4	2	44	1.38
63645158--63645211	27	2.0	27	88	0	81	38	1	7	51	1.41
63658718--63658759	21	2.0	21	85	0	57	66	9	7	16	1.42
63659441--63659480	20	2.0	21	85	14	57	32	2	2	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63659731--63659798	36	1.9	35	82	8	84	29	13	8	48	1.72
63661593--63661645	25	2.2	24	90	10	81	20	28	15	35	1.93
63663823--63663863	19	2.2	18	86	4	55	75	0	19	4	0.98
63669792--63669835	2	22.0	2	100	0	88	50	0	50	0	1.00
63671656--63671690	18	1.9	18	88	0	52	45	0	2	51	1.16
63672008--63672063	28	2.0	28	96	0	103	51	0	30	17	1.46
63685399--63685493	42	2.3	42	92	0	154	25	25	11	37	1.89
63687184--63687216	17	1.9	17	93	0	57	27	0	18	54	1.44
63688441--63688624	46	4.0	46	94	0	314	34	9	27	28	1.88
63693942--63694074	21	6.3	21	76	8	110	14	21	17	46	1.83
63693945--63694065	63	1.9	63	91	3	199	15	21	17	45	1.85
63693942--63694074	42	3.2	42	75	4	142	14	21	17	46	1.83
63699111--63699241	62	2.1	62	97	1	244	35	6	21	36	1.78
63700038--63700081	23	1.9	23	85	0	61	43	4	13	38	1.65
63702147--63702313	43	3.8	43	81	9	171	32	26	15	24	1.95
63709778--63709938	43	3.7	43	86	6	211	29	25	18	26	1.98
63712172--63712214	21	2.1	21	87	8	63	16	4	23	55	1.59
63722935--63722973	17	2.4	16	86	4	51	58	0	0	41	0.98
63723140--63723178	19	2.1	19	85	4	53	53	0	2	43	1.14
63725074--63725205	67	2.0	67	82	8	164	29	4	25	40	1.76
63727054--63727084	8	3.9	8	100	0	62	48	0	0	51	1.00
63744228--63744284	27	2.1	27	100	0	114	40	19	17	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63749168--63749223	26	2.1	27	83	3	69	21	10	10	57	1.63
63755933--63755983	25	2.0	25	96	0	93	19	31	17	31	1.95
63755933--63755997	25	2.6	25	87	0	76	20	27	21	30	1.98
63760875--63760984	27	4.0	27	75	11	87	43	30	13	12	1.81
63763211--63763395	42	4.4	42	79	2	165	32	26	18	22	1.97
63763256--63763395	43	3.3	41	77	6	136	34	28	17	19	1.95
63764067--63764134	16	4.2	16	92	0	109	25	0	36	38	1.56
63764148--63764249	44	2.3	44	100	0	204	31	3	30	34	1.76
63764148--63764266	44	2.8	42	92	6	172	32	3	31	32	1.74
63764415--63764449	18	2.0	17	88	5	52	54	0	0	45	0.99
63764373--63764445	27	2.7	27	76	8	76	52	2	0	45	1.15
63764562--63764596	18	2.0	17	88	5	52	54	0	0	45	0.99
63764334--63764608	147	1.9	149	95	1	500	45	3	2	47	1.35
63764664--63764716	16	3.4	17	73	21	53	56	0	0	43	0.99
63764590--63764776	60	3.1	59	66	13	157	49	6	2	41	1.42
63764542--63764836	119	2.5	120	93	2	495	50	4	2	43	1.35
63772113--63772333	113	2.0	112	83	3	284	35	11	11	41	1.77
63772625--63772672	7	6.9	7	82	0	51	43	33	0	22	1.54
63772601--63772803	55	3.5	60	82	12	239	37	35	3	22	1.73
63772663--63772757	27	3.5	27	67	8	75	36	36	4	22	1.74
63772690--63772727	14	2.7	14	87	0	58	47	26	0	26	1.52
63772658--63772842	56	3.3	54	85	5	210	35	36	3	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63772807--63772860	21	2.5	21	84	3	72	35	40	1	22	1.65
63773113--63773190	7	10.9	7	71	15	52	46	29	0	24	1.53
63773402--63773925	114	4.6	114	91	0	791	25	26	21	25	2.00
63774996--63775028	16	2.0	17	94	5	59	42	3	12	42	1.57
63775807--63775973	84	2.0	84	89	4	257	33	13	14	38	1.85
63788445--63788483	6	6.5	6	100	0	78	0	46	17	35	1.49
63793759--63793957	97	2.0	99	82	5	244	31	10	20	37	1.86
63805988--63806028	20	2.0	20	100	0	82	46	29	9	14	1.77
63808417--63808460	23	1.9	22	82	17	54	36	25	0	38	1.56
63808506--63808593	45	2.0	45	88	0	131	34	22	17	26	1.96
63808604--63808790	51	3.7	50	75	7	189	33	26	16	24	1.95
63814904--63814952	22	2.3	20	78	18	55	38	12	0	48	1.41
63814910--63814952	22	2.0	22	90	9	70	34	13	0	51	1.42
63820936--63820980	7	6.6	7	92	2	74	60	11	0	28	1.31
63821666--63821858	50	3.8	50	84	3	244	20	31	22	25	1.98
63821666--63821858	100	1.9	100	86	3	271	20	31	22	25	1.98
63826714--63826963	100	2.4	103	86	5	344	20	30	23	26	1.99
63826715--63826963	50	4.8	50	85	3	291	20	30	23	26	1.98
63831907--63832099	50	3.8	50	85	2	253	20	31	22	25	1.98
63831907--63832099	100	1.9	101	87	3	282	20	31	22	25	1.98
63836838--63836935	41	2.4	41	96	0	178	30	15	27	26	1.96
63836981--63837009	13	2.1	14	93	6	51	31	13	17	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63840982--63841096	41	2.8	41	80	7	142	21	13	25	39	1.91
63840982--63841143	43	3.8	42	79	8	150	21	16	25	35	1.94
63841076--63841190	44	2.6	44	97	1	214	20	20	29	28	1.98
63849422--63849639	96	2.3	97	82	6	264	41	2	17	38	1.64
63849676--63850217	126	4.3	126	92	0	879	32	18	22	26	1.97
63852319--63852385	11	6.0	11	77	13	66	47	0	29	22	1.51
63857988--63858040	26	2.0	26	96	0	97	37	18	18	24	1.94
63859384--63859447	13	4.9	13	80	19	71	78	7	4	9	1.09
63859439--63859483	6	7.7	6	90	2	65	68	11	4	15	1.34
63859469--63859509	19	2.0	20	86	9	57	73	0	21	4	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222