genome.fa.s15.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  181  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58001146--58002092	44	21.5	44	76	5	867	29	25	16	27	1.97
58001147--58002092	220	4.3	220	94	0	1518	29	26	16	27	1.97
58003295--58003327	6	5.7	6	96	3	59	0	15	0	84	0.61
58008560--58008611	22	2.4	22	83	3	61	44	15	5	34	1.70
58008573--58008614	22	1.9	22	95	0	75	40	14	7	38	1.73
58008573--58008648	19	3.8	19	91	5	98	38	15	9	36	1.80
58008573--58008648	41	1.9	38	84	7	98	38	15	9	36	1.80
58009733--58009777	6	7.7	6	95	5	83	84	0	0	15	0.62
58009734--58009787	6	9.8	5	93	2	54	81	0	1	16	0.78
58010551--58010679	49	2.6	49	92	3	170	27	23	19	30	1.98
58011581--58011662	42	1.9	43	85	2	112	28	28	13	30	1.94
58022410--58022451	17	2.5	17	80	7	50	78	4	0	16	0.91
58022741--58022858	28	4.1	28	73	15	73	46	2	11	38	1.54
58026639--58026666	12	2.3	12	100	0	56	42	21	0	35	1.53
58031568--58031691	63	2.1	58	81	7	140	29	21	21	26	1.99
58032397--58032442	22	2.1	22	91	0	74	15	19	19	45	1.85
58033994--58034125	61	2.2	59	85	7	171	50	3	3	43	1.35
58037418--58037464	24	2.0	24	95	0	85	57	4	6	31	1.43
58040671--58041237	295	1.9	295	94	0	992	33	15	14	37	1.87
58044303--58044388	26	3.3	25	75	13	84	23	6	2	67	1.27
58051395--58051431	16	2.3	16	95	0	65	45	5	13	35	1.66
58057416--58057471	22	2.6	21	86	5	85	1	14	8	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58057424--58057532	33	3.5	33	80	9	104	1	11	11	75	1.13
58057457--58057550	10	9.4	10	75	16	72	2	9	11	76	1.10
58057458--58057515	21	2.8	21	80	15	75	1	10	10	77	1.06
58057434--58057508	33	2.3	33	90	2	125	2	13	10	73	1.20
58057456--58057550	11	8.4	11	69	19	70	2	9	11	76	1.09
58057416--58057520	55	1.9	55	86	7	151	1	12	10	75	1.13
58057499--58057533	17	2.1	17	94	0	61	0	5	17	77	0.96
58057490--58057542	9	5.8	9	86	8	72	1	7	13	77	1.06
58065030--58065060	16	1.9	16	93	0	53	9	9	9	70	1.33
58066133--58066215	34	2.4	34	87	2	121	46	2	13	37	1.56
58066653--58066758	12	9.2	12	68	20	50	40	1	3	53	1.30
58066653--58066744	37	2.4	36	81	15	98	40	2	4	53	1.33
58066653--58066728	11	6.8	11	72	21	52	40	1	2	55	1.22
58066670--58066867	68	3.0	66	70	14	192	39	3	5	51	1.41
58075716--58075879	30	5.3	30	83	4	159	35	6	14	43	1.70
58077071--58077133	31	2.0	31	96	0	117	31	7	22	38	1.83
58080981--58081010	3	10.3	3	92	7	53	66	0	33	0	0.92
58081444--58081497	16	3.4	16	89	0	81	33	0	33	33	1.58
58081476--58081585	45	2.6	43	80	9	129	35	5	27	31	1.80
58081711--58081752	15	2.7	16	82	14	52	52	2	0	45	1.13
58081720--58081761	15	2.9	15	82	10	52	52	0	0	47	1.00
58081709--58081919	107	2.0	108	97	0	397	49	5	1	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58081814--58081859	16	2.9	16	78	12	51	52	2	0	45	1.13
58081814--58081868	15	3.7	15	79	13	53	52	1	0	45	1.11
58081748--58081917	37	4.7	35	67	20	100	48	6	1	43	1.39
58081712--58081975	107	2.5	107	87	6	353	50	4	1	43	1.33
58089928--58090051	30	4.1	30	93	1	203	25	24	6	43	1.78
58089938--58090045	15	7.2	15	67	12	78	25	22	7	44	1.79
58094619--58094742	30	4.1	30	93	1	203	25	24	6	43	1.78
58094629--58094736	15	7.2	15	67	12	78	25	22	7	44	1.79
58115204--58115247	19	2.3	19	84	7	54	25	22	11	40	1.87
58122519--58122548	12	2.5	12	94	0	51	70	0	6	23	1.11
58123910--58124120	44	4.6	45	68	14	115	34	18	18	28	1.95
58123850--58124196	142	2.5	139	86	7	489	33	20	19	26	1.96
58123993--58124196	44	4.7	43	74	11	184	31	20	20	27	1.98
58126212--58126262	27	1.9	26	84	11	68	23	7	11	56	1.61
58131768--58131831	8	8.1	8	73	16	62	37	0	3	59	1.13
58141524--58141559	18	2.0	18	89	10	56	27	13	13	44	1.82
58144326--58144354	6	4.8	6	100	0	58	0	13	0	86	0.58
58144421--58144445	7	3.6	7	100	0	50	32	16	16	36	1.90
58145279--58145332	28	2.1	25	78	21	58	46	1	3	48	1.30
58150117--58150143	12	2.2	12	100	0	54	51	7	0	40	1.30
58151880--58151994	44	2.6	46	78	12	148	26	22	22	27	1.99
58151877--58152731	87	9.8	87	89	2	1178	24	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58152018--58152154	43	3.2	43	63	17	102	24	20	24	30	1.98
58153166--58153359	106	1.8	108	86	4	286	46	11	17	24	1.81
58153325--58153425	45	2.3	43	78	10	103	52	7	12	26	1.67
58153693--58153737	13	3.5	12	84	6	54	0	20	2	77	0.87
58153694--58153752	20	3.0	20	76	14	59	0	16	3	79	0.86
58153695--58153751	19	3.2	17	79	18	55	0	15	3	80	0.84
58153693--58153750	26	2.2	26	81	6	73	0	17	3	79	0.87
58154194--58154245	6	8.8	6	83	12	56	3	0	11	84	0.74
58154202--58154245	15	3.0	14	86	3	61	2	0	13	84	0.73
58157745--58157771	12	2.2	12	100	0	54	51	7	0	40	1.30
58159343--58159376	17	2.1	16	88	5	50	0	17	0	82	0.67
58166860--58166937	35	2.3	32	84	6	93	34	25	11	28	1.91
58173812--58173836	12	2.1	12	100	0	50	24	0	44	32	1.54
58178921--58179033	55	2.1	55	96	0	208	30	22	27	20	1.98
58188513--58188639	40	3.2	40	74	7	125	32	22	17	28	1.96
58194666--58194692	12	2.2	12	100	0	54	48	37	0	14	1.45
58197894--58197948	19	3.0	19	81	5	51	45	3	0	50	1.19
58198014--58198054	15	2.8	15	85	3	57	39	0	0	60	0.96
58206571--58206620	22	2.3	22	85	0	73	26	10	24	40	1.86
58206629--58206701	22	3.0	25	71	18	82	26	17	15	41	1.89
58206525--58206672	70	2.1	69	83	1	179	25	14	17	42	1.87
58206593--58206718	47	2.7	48	86	2	175	23	15	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58206687--58206740	21	2.5	21	87	3	72	22	12	24	40	1.89
58206641--58206866	69	3.3	69	90	0	364	24	15	19	41	1.90
58210127--58210196	19	3.6	18	71	17	50	60	4	2	32	1.31
58213984--58214017	18	1.9	18	88	5	52	38	0	2	58	1.13
58214820--58214851	14	2.4	14	90	10	50	65	0	6	28	1.16
58222349--58222411	30	2.1	30	90	0	99	26	3	11	58	1.47
58222494--58222532	18	2.2	18	86	9	53	23	0	10	66	1.22
58222792--58222837	3	15.7	3	95	4	85	67	0	0	32	0.91
58223394--58223447	10	5.3	10	77	2	54	64	3	0	31	1.11
58225614--58225643	13	2.3	13	94	0	51	50	6	13	30	1.67
58229766--58229880	56	2.1	56	94	0	203	33	26	14	24	1.94
58231806--58231864	29	2.1	28	82	14	70	35	10	6	47	1.64
58233840--58233892	21	2.5	21	93	0	88	30	39	9	20	1.84
58234674--58234851	26	7.2	25	65	16	77	40	1	3	55	1.24
58234777--58234812	18	2.0	18	100	0	72	33	0	0	66	0.92
58234803--58234860	13	4.3	13	79	16	64	41	1	0	56	1.09
58234781--58234820	18	2.2	18	86	0	53	42	0	0	57	0.98
58234578--58235190	120	5.1	120	94	0	976	42	1	4	50	1.33
58234578--58235184	241	2.5	240	91	0	973	42	1	4	50	1.33
58235136--58235170	18	2.0	17	88	5	52	45	0	0	54	0.99
58235403--58235433	16	1.9	16	100	0	62	19	35	6	38	1.77
58236028--58236068	22	1.9	21	95	5	73	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58236018--58236135	29	4.1	28	73	15	73	55	5	1	37	1.35
58236202--58236293	47	2.0	47	93	4	159	40	11	7	40	1.71
58257924--58258422	146	3.5	145	78	10	634	26	25	19	29	1.98
58258070--58258818	132	5.6	132	83	7	889	27	23	19	29	1.98
58257791--58258800	278	3.7	277	89	3	1406	27	24	19	28	1.98
58258391--58258608	44	5.0	44	66	14	126	26	24	20	28	1.99
58262781--58262814	10	3.4	10	87	0	50	41	14	0	44	1.45
58263001--58263058	30	2.0	30	82	3	73	46	10	1	41	1.48
58271041--58271074	16	2.1	16	88	5	50	8	0	14	76	1.01
58274581--58274678	43	2.3	43	83	1	126	30	25	14	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222